CmUC03G058400 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC03G058400
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Heat shock protein DnaJ with tetratricopeptide repeat
Location	CmU531Chr03: 9684391 .. 9684696 (-)
RNA-Seq Expression	CmUC03G058400
Synteny	CmUC03G058400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAAAAAAGCACCAACATGTCCACGCGACGACTTCTCTTCCAATCCTTTTGACCACCACCGTCGAATGTGACACCATCGTCGCCCTTCCTCAGCCACGTAAAGCTCCTCCTTCATCATTGCACCACGACCTCTTTGATTGCCTTCACGACCTCGAACATTTGAAGCTCTTCTACAAGTCAATATTGAAATGTCGAAAGCTTCCTGGTCCAACATGGAAGCACCATAATGTGCAGTATAGTGAAATCCCAAGTAACTATCAAGGTACTTGTCTTTTCTCCCTCACAAAATCAGAGCAAAATTAG

mRNA sequence

ATGCCAAAAAAGCACCAACATGTCCACGCGACGACTTCTCTTCCAATCCTTTTGACCACCACCGTCGAATGTGACACCATCGTCGCCCTTCCTCAGCCACGTAAAGCTCCTCCTTCATCATTGCACCACGACCTCTTTGATTGCCTTCACGACCTCGAACATTTGAAGCTCTTCTACAAGTCAATATTGAAATGTCGAAAGCTTCCTGGTCCAACATGGAAGCACCATAATGTGCAGTATAGTGAAATCCCAAGTAACTATCAAGGTACTTGTCTTTTCTCCCTCACAAAATCAGAGCAAAATTAG

Coding sequence (CDS)

ATGCCAAAAAAGCACCAACATGTCCACGCGACGACTTCTCTTCCAATCCTTTTGACCACCACCGTCGAATGTGACACCATCGTCGCCCTTCCTCAGCCACGTAAAGCTCCTCCTTCATCATTGCACCACGACCTCTTTGATTGCCTTCACGACCTCGAACATTTGAAGCTCTTCTACAAGTCAATATTGAAATGTCGAAAGCTTCCTGGTCCAACATGGAAGCACCATAATGTGCAGTATAGTGAAATCCCAAGTAACTATCAAGGTACTTGTCTTTTCTCCCTCACAAAATCAGAGCAAAATTAG

Protein sequence

MPKKHQHVHATTSLPILLTTTVECDTIVALPQPRKAPPSSLHHDLFDCLHDLEHLKLFYKSILKCRKLPGPTWKHHNVQYSEIPSNYQGTCLFSLTKSEQN

Homology

[Close]

BLAST of CmUC03G058400 vs. NCBI nr
Match: XP_039027284.1 (uncharacterized protein LOC120161050 [Hibiscus syriacus] >KAE8679593.1 putative DNA replication regulator dpb11 [Hibiscus syriacus])

HSP 1 Score: 75.9 bits (185), Expect = 2.3e-10
Identity = 33/42 (78.57%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 43  HDLFDCLHDLEHLKLFYKSILKCRKLPGPTWKHHNVQYSEIP 85
           H L DCLHDLEHLKL Y SIL+ RKLPGPTWK HNV+Y EIP
Sbjct: 333 HCLPDCLHDLEHLKLLYNSILRDRKLPGPTWKRHNVRYREIP 374

[Close]

BLAST of CmUC03G058400 vs. NCBI nr
Match: KAA0044409.1 (Heat shock protein DnaJ with tetratricopeptide repeat isoform 1 [Cucumis melo var. makuwa] >TYK29536.1 Heat shock protein DnaJ with tetratricopeptide repeat isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 3.9e-10
Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 43  HDLFDCLHDLEHLKLFYKSILKCRKLPGPTWKHHNVQYSEIP 85
           H L DCLHDLEHLKL Y SIL+ RKLPGP WK HNV+Y EIP
Sbjct: 323 HCLVDCLHDLEHLKLLYNSILRDRKLPGPAWKRHNVRYREIP 364

[Close]

BLAST of CmUC03G058400 vs. NCBI nr
Match: XP_008454300.1 (PREDICTED: uncharacterized protein LOC103494740 [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 3.9e-10
Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 43  HDLFDCLHDLEHLKLFYKSILKCRKLPGPTWKHHNVQYSEIP 85
           H L DCLHDLEHLKL Y SIL+ RKLPGP WK HNV+Y EIP
Sbjct: 333 HCLVDCLHDLEHLKLLYNSILRDRKLPGPAWKRHNVRYREIP 374

[Close]

BLAST of CmUC03G058400 vs. NCBI nr
Match: XP_038995852.1 (uncharacterized protein LOC120120243 isoform X1 [Hibiscus syriacus] >KAE8708698.1 hypothetical protein F3Y22_tig00110333pilonHSYRG00090 [Hibiscus syriacus])

HSP 1 Score: 73.9 bits (180), Expect = 8.6e-10
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 47  DCLHDLEHLKLFYKSILKCRKLPGPTWKHHNVQYSEIP 85
           DCLHD EHLKL Y SIL+ RKLPGP WKHHNV+Y EIP
Sbjct: 334 DCLHDFEHLKLLYNSILRDRKLPGPVWKHHNVRYKEIP 371

[Close]

BLAST of CmUC03G058400 vs. NCBI nr
Match: XP_038995854.1 (uncharacterized protein LOC120120243 isoform X2 [Hibiscus syriacus])

HSP 1 Score: 73.9 bits (180), Expect = 8.6e-10
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 47  DCLHDLEHLKLFYKSILKCRKLPGPTWKHHNVQYSEIP 85
           DCLHD EHLKL Y SIL+ RKLPGP WKHHNV+Y EIP
Sbjct: 334 DCLHDFEHLKLLYNSILRDRKLPGPVWKHHNVRYKEIP 371

[Close]

BLAST of CmUC03G058400 vs. ExPASy TrEMBL
Match: A0A6A2XV72 (Putative DNA replication regulator dpb11 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111398pilonHSYRG00180 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.1e-10
Identity = 33/42 (78.57%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 43  HDLFDCLHDLEHLKLFYKSILKCRKLPGPTWKHHNVQYSEIP 85
           H L DCLHDLEHLKL Y SIL+ RKLPGPTWK HNV+Y EIP
Sbjct: 333 HCLPDCLHDLEHLKLLYNSILRDRKLPGPTWKRHNVRYREIP 374

[Close]

BLAST of CmUC03G058400 vs. ExPASy TrEMBL
Match: A0A5D3E0U9 (Heat shock protein DnaJ with tetratricopeptide repeat isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001390 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.9e-10
Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 43  HDLFDCLHDLEHLKLFYKSILKCRKLPGPTWKHHNVQYSEIP 85
           H L DCLHDLEHLKL Y SIL+ RKLPGP WK HNV+Y EIP
Sbjct: 323 HCLVDCLHDLEHLKLLYNSILRDRKLPGPAWKRHNVRYREIP 364

[Close]

BLAST of CmUC03G058400 vs. ExPASy TrEMBL
Match: A0A1S3BXS6 (uncharacterized protein LOC103494740 OS=Cucumis melo OX=3656 GN=LOC103494740 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.9e-10
Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 43  HDLFDCLHDLEHLKLFYKSILKCRKLPGPTWKHHNVQYSEIP 85
           H L DCLHDLEHLKL Y SIL+ RKLPGP WK HNV+Y EIP
Sbjct: 333 HCLVDCLHDLEHLKLLYNSILRDRKLPGPAWKRHNVRYREIP 374

[Close]

BLAST of CmUC03G058400 vs. ExPASy TrEMBL
Match: A0A6A3AYE3 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110333pilonHSYRG00090 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.2e-10
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 47  DCLHDLEHLKLFYKSILKCRKLPGPTWKHHNVQYSEIP 85
           DCLHD EHLKL Y SIL+ RKLPGP WKHHNV+Y EIP
Sbjct: 334 DCLHDFEHLKLLYNSILRDRKLPGPVWKHHNVRYKEIP 371

[Close]

BLAST of CmUC03G058400 vs. ExPASy TrEMBL
Match: A0A540K6Y7 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_044479 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.2e-10
Identity = 35/54 (64.81%), Postives = 40/54 (74.07%), Query Frame = 0


Query: 47  DCLHDLEHLKLFYKSILKCRKLPGPTWKHHNVQYSEIPSNYQGTCLFSLTKSEQ 101
           DCLHDLEHLKL Y SIL+ RKLPGP WK HNV+Y EIP      CL + TK++Q
Sbjct: 347 DCLHDLEHLKLLYNSILRDRKLPGPAWKRHNVRYREIPGK---LCLLT-TKTQQ 396

[Close]

BLAST of CmUC03G058400 vs. TAIR 10
Match: AT4G02100.1 (Heat shock protein DnaJ with tetratricopeptide repeat )

HSP 1 Score: 68.2 bits (165), Expect = 4.4e-12
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 47  DCLHDLEHLKLFYKSILKCRKLPGPTWKHHNVQYSEIP 85
           D LHDLEHLKL Y SIL+ RKLPGP WK HNV+Y EIP
Sbjct: 329 DSLHDLEHLKLLYNSILRDRKLPGPVWKRHNVRYREIP 366

[Close]

BLAST of CmUC03G058400 vs. TAIR 10
Match: AT2G47440.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 67.0 bits (162), Expect = 9.8e-12
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 47  DCLHDLEHLKLFYKSILKCRKLPGPTWKHHNVQYSEIP 85
           D LHDLEHLKL Y +IL+ RKLPGP WK HNV+Y EIP
Sbjct: 311 DSLHDLEHLKLLYNTILRDRKLPGPVWKRHNVKYREIP 348

[Close]

BLAST of CmUC03G058400 vs. TAIR 10
Match: AT3G62570.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 65.9 bits (159), Expect = 2.2e-11
Identity = 27/38 (71.05%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 47  DCLHDLEHLKLFYKSILKCRKLPGPTWKHHNVQYSEIP 85
           D LHDLEHLK+ Y +IL+ RKLPGP WK HNV+Y EIP
Sbjct: 332 DSLHDLEHLKILYNTILRDRKLPGPPWKRHNVKYREIP 369

[Close]

BLAST of CmUC03G058400 vs. TAIR 10
Match: AT1G02650.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-10
Identity = 33/69 (47.83%), Postives = 41/69 (59.42%), Query Frame = 0


Query: 23  ECDTIVALPQPRKAPPSSLHHDLF-------DCLHDLEHLKLFYKSILKCRKLPGPTWKH 82
           +C+ I+AL +P          +LF       D LHDLEHLKL + SIL+ R L GP WK 
Sbjct: 276 DCNLILAL-EPSCIEALETRAELFRSIRCFPDSLHDLEHLKLLFNSILRDRSLTGPVWKR 335

Query: 83  HNVQYSEIP 85
           HNV+Y EIP
Sbjct: 336 HNVRYREIP 343

The following BLAST results are available for this feature:

BLAST of CmUC03G058400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_039027284.1	2.3e-10	78.57	uncharacterized protein LOC120161050 [Hibiscus syriacus] >KAE8679593.1 putative ...	[more]
KAA0044409.1	3.9e-10	76.19	Heat shock protein DnaJ with tetratricopeptide repeat isoform 1 [Cucumis melo va...	[more]
XP_008454300.1	3.9e-10	76.19	PREDICTED: uncharacterized protein LOC103494740 [Cucumis melo]	[more]
XP_038995852.1	8.6e-10	78.95	uncharacterized protein LOC120120243 isoform X1 [Hibiscus syriacus] >KAE8708698....	[more]
XP_038995854.1	8.6e-10	78.95	uncharacterized protein LOC120120243 isoform X2 [Hibiscus syriacus]	[more]

BLAST of CmUC03G058400 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC03G058400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A2XV72	1.1e-10	78.57	Putative DNA replication regulator dpb11 OS=Hibiscus syriacus OX=106335 GN=F3Y22...	[more]
A0A5D3E0U9	1.9e-10	76.19	Heat shock protein DnaJ with tetratricopeptide repeat isoform 1 OS=Cucumis melo ...	[more]
A0A1S3BXS6	1.9e-10	76.19	uncharacterized protein LOC103494740 OS=Cucumis melo OX=3656 GN=LOC103494740 PE=...	[more]
A0A6A3AYE3	4.2e-10	78.95	Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110333pilon...	[more]
A0A540K6Y7	4.2e-10	64.81	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_044479 PE=4 SV=1	[more]

BLAST of CmUC03G058400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02100.1	4.4e-12	76.32	Heat shock protein DnaJ with tetratricopeptide repeat	[more]
AT2G47440.1	9.8e-12	73.68	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G62570.1	2.2e-11	71.05	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G02650.1	1.4e-10	47.83	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46816:SF1	TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN	coord: 45..87
None	No IPR available	PANTHER	PTHR46816	FAMILY NOT NAMED	coord: 45..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC03G058400.1	CmUC03G058400.1	mRNA