CmUC03G057670 (gene) Watermelon (USVL531) v1

Overview
NameCmUC03G057670
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionUnknown protein
LocationCmU531Chr03: 8526245 .. 8526742 (-)
RNA-Seq ExpressionCmUC03G057670
SyntenyCmUC03G057670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCTCGTAATTTGATTGCTCCAAAACATTCTGAATATGAAGGCAATGCCACAAAGTTTCTAATCCCAACATTCCCCATCAACAAAATCGCCCGATTCTTCGCATTTCGGTTCAACCCGAGTCCGAACCCGATCCAATTAAACAGAGCAGCGACCCGATCCCGAATTGCCACCGAAATATCTCGACTGGGGAATGAATACGCCAAGAAATTTGCCTATAAACCGACCCGGCTCAGCCCCGGCGGACCCGACCCGTACCACCATTAGCAACGATCGGATTTGGGGGTGTTCTTTTTTTTTTTGGTAAGAAGAAGAATAAACACCCCTGGCCCCAAAAACACTTCATTTGAAAATTGGGCATTTGATTCGAGAAATGCCGAATCATCAAGATTCGGAGCAACATTTGGATTTATAGCCGTTTCTTGTTGGGTCAATACAATGATCGACATCATATCAAATCTCAAGAAACAAGCTAAGGTGATGATCCAGCTTTGA

mRNA sequence

ATGGAAGCTCGTAATTTGATTGCTCCAAAACATTCTGAATATGAAGGCAATGCCACAAAGTTTCTAATCCCAACATTCCCCATCAACAAAATCGCCCGATTCTTCGCATTTCGGTTCAACCCGAGTCCGAACCCGATCCAATTAAACAGAGCAGCGACCCGATCCCGAATTGCCACCGAAATATCTCGACTGGGGAATGAATACGCCAAGAAATTTGCCTATAAACCGACCCGGCTCAGCCCCGGCGGACCCGACCCAATAAACACCCCTGGCCCCAAAAACACTTCATTTGAAAATTGGGCATTTGATTCGAGAAATGCCGAATCATCAAGATTCGGAGCAACATTTGGATTTATAGCCGTTTCTTGTTGGGTCAATACAATGATCGACATCATATCAAATCTCAAGAAACAAGCTAAGGTGATGATCCAGCTTTGA

Coding sequence (CDS)

ATGGAAGCTCGTAATTTGATTGCTCCAAAACATTCTGAATATGAAGGCAATGCCACAAAGTTTCTAATCCCAACATTCCCCATCAACAAAATCGCCCGATTCTTCGCATTTCGGTTCAACCCGAGTCCGAACCCGATCCAATTAAACAGAGCAGCGACCCGATCCCGAATTGCCACCGAAATATCTCGACTGGGGAATGAATACGCCAAGAAATTTGCCTATAAACCGACCCGGCTCAGCCCCGGCGGACCCGACCCAATAAACACCCCTGGCCCCAAAAACACTTCATTTGAAAATTGGGCATTTGATTCGAGAAATGCCGAATCATCAAGATTCGGAGCAACATTTGGATTTATAGCCGTTTCTTGTTGGGTCAATACAATGATCGACATCATATCAAATCTCAAGAAACAAGCTAAGGTGATGATCCAGCTTTGA

Protein sequence

MEARNLIAPKHSEYEGNATKFLIPTFPINKIARFFAFRFNPSPNPIQLNRAATRSRIATEISRLGNEYAKKFAYKPTRLSPGGPDPINTPGPKNTSFENWAFDSRNAESSRFGATFGFIAVSCWVNTMIDIISNLKKQAKVMIQL
Homology
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BLAST of CmUC03G057670 vs. NCBI nr
Match: KAG6583968.1 (hypothetical protein SDJN03_19900, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.4 bits (233), Expect = 8.9e-16
Identity = 52/86 (60.47%), Postives = 60/86 (69.77%), Query Frame = 0 

Query: 1  MEARNLIAPKHSEYEGNATKFLIPTFPINKIARFFAFRFNPSPNPIQLNRAATRSRIATE 60
          ++AR LI PK+S       KF IP   I +IARFFA   NPS +  + N A T  R+ATE
Sbjct: 20 LQARTLIGPKNS-------KFTIPISHITRIARFFAIPINPSQSSTKSNPALT--RMATE 79

Query: 61 ISRLGNEYAKKFAYKPTRLSPGGPDP 87
          ISRLGNE+AKKF YKPTRLSPGGPDP
Sbjct: 80 ISRLGNEHAKKFGYKPTRLSPGGPDP 96

The following BLAST results are available for this feature:
BLAST of CmUC03G057670 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6583968.18.9e-1660.47hypothetical protein SDJN03_19900, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmUC03G057670 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CmUC03G057670 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CmUC03G057670 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC03G057670.1CmUC03G057670.1mRNA