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CmUC03G056500 (gene) Watermelon (USVL531) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAACAAGAATCAGGAGGATCCATGGTTCAGGATGGGAGCAATGTTGAGTCTAACCCAGAGATTTTAGATCGTGTAGGAAAGGTAAGAAAGCTGCTGTTCCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTAGGCAACTTTTACTGCATTGACAAGCAAGGAAATATCATCCTTCAAGACGCAGTAGAGTATCGTAGCACTCGACGTAACTCGCCTTCTCCGATGGAACAACGGTGCCTTGGTCTTATTCTTATACCCAACTCTTGTCGTGTATCTTGTCATGTAGATAGTACCATTGATGAACAATTGGCACTGCTATTGGTTTAG ATGGAACAAGAATCAGGAGGATCCATGGTTCAGGATGGGAGCAATGTTGAGTCTAACCCAGAGATTTTAGATCGTGTAGGAAAGGTAAGAAAGCTGCTGTTCCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTAGGCAACTTTTACTGCATTGACAAGCAAGGAAATATCATCCTTCAAGACGCAGTAGAGTATCGTAGCACTCGACGTAACTCGCCTTCTCCGATGGAACAACGGTGCCTTGGTCTTATTCTTATACCCAACTCTTGTCGTGTATCTTGTCATGTAGATAGTACCATTGATGAACAATTGGCACTGCTATTGGTTTAG ATGGAACAAGAATCAGGAGGATCCATGGTTCAGGATGGGAGCAATGTTGAGTCTAACCCAGAGATTTTAGATCGTGTAGGAAAGGTAAGAAAGCTGCTGTTCCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTAGGCAACTTTTACTGCATTGACAAGCAAGGAAATATCATCCTTCAAGACGCAGTAGAGTATCGTAGCACTCGACGTAACTCGCCTTCTCCGATGGAACAACGGTGCCTTGGTCTTATTCTTATACCCAACTCTTGTCGTGTATCTTGTCATGTAGATAGTACCATTGATGAACAATTGGCACTGCTATTGGTTTAG MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLLV Homology
BLAST of CmUC03G056500 vs. NCBI nr
Match: XP_011649337.1 (uncharacterized protein LOC101206200 [Cucumis sativus] >KGN63907.1 hypothetical protein Csa_014187 [Cucumis sativus]) HSP 1 Score: 218.0 bits (554), Expect = 4.1e-53 Identity = 107/112 (95.54%), Postives = 109/112 (97.32%), Query Frame = 0
BLAST of CmUC03G056500 vs. NCBI nr
Match: XP_023520042.1 (uncharacterized protein LOC111783348 [Cucurbita pepo subsp. pepo] >KAG7019507.1 Small nuclear ribonucleoprotein-associated protein B, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 212.6 bits (540), Expect = 1.7e-51 Identity = 105/112 (93.75%), Postives = 109/112 (97.32%), Query Frame = 0
BLAST of CmUC03G056500 vs. NCBI nr
Match: XP_008444477.1 (PREDICTED: uncharacterized protein LOC103487784 [Cucumis melo] >KAA0053997.1 Small nuclear ribonucleoprotein family protein isoform 2 [Cucumis melo var. makuwa] >TYK20682.1 Small nuclear ribonucleoprotein family protein isoform 2 [Cucumis melo var. makuwa]) HSP 1 Score: 211.8 bits (538), Expect = 2.9e-51 Identity = 105/112 (93.75%), Postives = 107/112 (95.54%), Query Frame = 0
BLAST of CmUC03G056500 vs. NCBI nr
Match: XP_022927243.1 (uncharacterized protein LOC111434149 [Cucurbita moschata]) HSP 1 Score: 210.7 bits (535), Expect = 6.6e-51 Identity = 104/112 (92.86%), Postives = 108/112 (96.43%), Query Frame = 0
BLAST of CmUC03G056500 vs. NCBI nr
Match: XP_038893823.1 (uncharacterized protein LOC120082644 [Benincasa hispida] >XP_038893824.1 uncharacterized protein LOC120082644 [Benincasa hispida] >XP_038893825.1 uncharacterized protein LOC120082644 [Benincasa hispida] >XP_038893826.1 uncharacterized protein LOC120082644 [Benincasa hispida] >XP_038893827.1 uncharacterized protein LOC120082644 [Benincasa hispida]) HSP 1 Score: 210.3 bits (534), Expect = 8.6e-51 Identity = 103/112 (91.96%), Postives = 108/112 (96.43%), Query Frame = 0
BLAST of CmUC03G056500 vs. ExPASy Swiss-Prot
Match: Q55A45 (Small nuclear ribonucleoprotein-associated protein B OS=Dictyostelium discoideum OX=44689 GN=snrpb PE=3 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 2.3e-06 Identity = 29/88 (32.95%), Postives = 47/88 (53.41%), Query Frame = 0
BLAST of CmUC03G056500 vs. ExPASy Swiss-Prot
Match: Q6GQ67 (N-alpha-acetyltransferase 38-A, NatC auxiliary subunit OS=Xenopus laevis OX=8355 GN=naa38-a PE=3 SV=1) HSP 1 Score: 48.5 bits (114), Expect = 5.7e-05 Identity = 35/99 (35.35%), Postives = 49/99 (49.49%), Query Frame = 0
BLAST of CmUC03G056500 vs. ExPASy Swiss-Prot
Match: A2BIG9 (N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Danio rerio OX=7955 GN=naa38 PE=3 SV=1) HSP 1 Score: 48.5 bits (114), Expect = 5.7e-05 Identity = 29/74 (39.19%), Postives = 41/74 (55.41%), Query Frame = 0
BLAST of CmUC03G056500 vs. ExPASy Swiss-Prot
Match: A4IGZ4 (N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Xenopus tropicalis OX=8364 GN=naa38 PE=3 SV=2) HSP 1 Score: 47.8 bits (112), Expect = 9.6e-05 Identity = 34/99 (34.34%), Postives = 48/99 (48.48%), Query Frame = 0
BLAST of CmUC03G056500 vs. ExPASy Swiss-Prot
Match: Q6NU60 (N-alpha-acetyltransferase 38-B, NatC auxiliary subunit OS=Xenopus laevis OX=8355 GN=naa38-b PE=3 SV=1) HSP 1 Score: 46.2 bits (108), Expect = 2.8e-04 Identity = 28/73 (38.36%), Postives = 38/73 (52.05%), Query Frame = 0
BLAST of CmUC03G056500 vs. ExPASy TrEMBL
Match: A0A0A0LSZ5 (Sm domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G025880 PE=4 SV=1) HSP 1 Score: 218.0 bits (554), Expect = 2.0e-53 Identity = 107/112 (95.54%), Postives = 109/112 (97.32%), Query Frame = 0
BLAST of CmUC03G056500 vs. ExPASy TrEMBL
Match: A0A5D3DAS2 (Small nuclear ribonucleoprotein family protein isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00700 PE=4 SV=1) HSP 1 Score: 211.8 bits (538), Expect = 1.4e-51 Identity = 105/112 (93.75%), Postives = 107/112 (95.54%), Query Frame = 0
BLAST of CmUC03G056500 vs. ExPASy TrEMBL
Match: A0A1S3BAH4 (uncharacterized protein LOC103487784 OS=Cucumis melo OX=3656 GN=LOC103487784 PE=4 SV=1) HSP 1 Score: 211.8 bits (538), Expect = 1.4e-51 Identity = 105/112 (93.75%), Postives = 107/112 (95.54%), Query Frame = 0
BLAST of CmUC03G056500 vs. ExPASy TrEMBL
Match: A0A6J1EKG3 (uncharacterized protein LOC111434149 OS=Cucurbita moschata OX=3662 GN=LOC111434149 PE=4 SV=1) HSP 1 Score: 210.7 bits (535), Expect = 3.2e-51 Identity = 104/112 (92.86%), Postives = 108/112 (96.43%), Query Frame = 0
BLAST of CmUC03G056500 vs. ExPASy TrEMBL
Match: A0A6J1KMW6 (uncharacterized protein LOC111495614 OS=Cucurbita maxima OX=3661 GN=LOC111495614 PE=4 SV=1) HSP 1 Score: 207.6 bits (527), Expect = 2.7e-50 Identity = 102/112 (91.07%), Postives = 108/112 (96.43%), Query Frame = 0
BLAST of CmUC03G056500 vs. TAIR 10
Match: AT4G18372.1 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 151.4 bits (381), Expect = 4.4e-37 Identity = 74/110 (67.27%), Postives = 88/110 (80.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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