CmUC03G051870 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC03G051870
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Cold-inducible RNA binding protein
Location	CmU531Chr03: 1934278 .. 1935917 (+)
RNA-Seq Expression	CmUC03G051870
Synteny	CmUC03G051870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTCTTTCAATATTATGATATTCTCTCTTAAATTGATGCAAAAACGTCCGTCTGATTTGGAAGAAATGGCTAACCGACTCGGCTCGCAGCTGTTCATCAGCAGTAGCTCTCTCACTCACTCGAACATTTTATGGGAATGGTTTCTCGTCAAATTCTCAATTGATGATGATTTTTCTTCTCTTACTTTCCTCAGGACTGTCATCATACACAACGATTGAACGCCTTGAGAGTCTGTTTTCACCCTTCGGTTCAGTCTCTGAAGGTACACATCTCCTCCTCAATCATCGGTTTCAGATTCAATTTCCTTTCTTAACAATGGAAATTTTCAATGTTTGCAGCTCGGCTAGTTCGTGATCCAAAAACCCAGAGGCCCAAAGGGTTTGGTTTTGTCACATTTCAATCCCCGGTTGAAGCAAAGAAGGCTCTTCAAGCCATGAATGGTCGGGTATGTGTCCTCCCCTGCTTACGCACATAACCTGTTCGACGAAATGTCTGACTGACGTTTTATTTCCTATTTACATTTGTCGCATCTGGAATATGGTTCTGTTTGAATTTGTTTATTATTGAGAATTCATTTCAATTGGATTTTGTTAAATCAATGCCTGCAATATGCATATCTACTGGGCTTGATTAATTTGAGCTTTCGACCAAGATGCTGATTTTGGTAGCTAGTGAATTCATGAATCAAGTATTTCAAGCTGGGTCAATCATCAAGGAGATTTATATGAGTTTTGTTTGGATAAATGATACAGATAGTTGATGGAAGACTGATTTTCGTTGAATTTGCAAAGACTAGGAGACATGGGGAAGATGCTACATCTAGATAAAGAACATCATTCACAAGAGAAGGGGATTTGGATATTTGTGCATGCTTCGGAGTTTAATCCATATGTGGTGTCATATTAATAGTCAGTTCTTGAAAGAAAACGGTAAGATTACGATTATAAGGAATCTAATGTTCTAATCTCTTCTCCGATAAATGTGCGGTAGTTTAACTGTTGCCTTGAAACATCAATCTTTAAATTGGGTCTGCTTAACAATTTCATCTCCTAAATTTTTATGGTGATAATTGTTAGGTCAAAATCTATAGCTTAAAATACCATTTTGGTTTATGTAACAATTTGTAAGGGGTGTAAATCTCTTTGTTGATATTGAAGACTAGTTGCCTGGTGGAAAGGACCTACGAGTTAGGGATCGACGGTGTGATAAGACTAAAGAAACTCTCTAATGGATGAGATCAATATATTTAATACTCCAAGGATGAACAAACGTAGGTTTGATTGCATAGCTTCAATTGGAAGCTGCCATTTTCTCTCTGGCCAAGATTCTTCTCTTTTTATTATGGAATCCAAAGATGACGATTTTGTTTTAGTTCTTCGTTCGGCTGGACTTGATCTTCTTGCTGAGTAATGGTCTTTGATTCAAGAAGAAATGGTTCATTGTAGAAAGCTTTTTATCCATAAGCTTCTTGATCTCGTTGTCAATGCAGGTTGGATCTTCTCGAAGCTTATGTAGCTTTCAATTCATACTCTTAAACTTTGGGAGTTCTATCAATTAAAAGTCAAAATTAATAATTGTATCAATTTAAATTATGAAGTTTCATAAGTGTATCAATTTACATCCTTCTTCATATTTTTT

mRNA sequence

TTTTTCTTTCAATATTATGATATTCTCTCTTAAATTGATGCAAAAACGTCCGTCTGATTTGGAAGAAATGGCTAACCGACTCGGCTCGCAGCTGTTCATCAGCAGACTGTCATCATACACAACGATTGAACGCCTTGAGAGTCTGTTTTCACCCTTCGGTTCAGTCTCTGAAGCTCGGCTAGTTCGTGATCCAAAAACCCAGAGGCCCAAAGGGTTTGGTTTTGTCACATTTCAATCCCCGGTTGAAGCAAAGAAGGCTCTTCAAGCCATGAATGGTCGGATAGTTGATGGAAGACTGATTTTCGTTGAATTTGCAAAGACTAGGAGACATGGGGAAGATGCTACATCTAGATAAAGAACATCATTCACAAGAGAAGGGGATTTGGATATTTGTGCATGCTTCGGAGTTTAATCCATATGTGGTGTCATATTAATAGTCAGTTCTTGAAAGAAAACGGTAAGATTACGATTATAAGGAATCTAATGTTCTAATCTCTTCTCCGATAAATGTGCGGTAGTTTAACTGTTGCCTTGAAACATCAATCTTTAAATTGGGTCTGCTTAACAATTTCATCTCCTAAATTTTTATGGTGATAATTGTTAGGTCAAAATCTATAGCTTAAAATACCATTTTGGTTTATGTAACAATTTGTAAGGGGTGTAAATCTCTTTGTTGATATTGAAGACTAGTTGCCTGGTGGAAAGGACCTACGAGTTAGGGATCGACGGTGTGATAAGACTAAAGAAACTCTCTAATGGATGAGATCAATATATTTAATACTCCAAGGATGAACAAACGTAGGTTTGATTGCATAGCTTCAATTGGAAGCTGCCATTTTCTCTCTGGCCAAGATTCTTCTCTTTTTATTATGGAATCCAAAGATGACGATTTTGTTTTAGTTCTTCGTTCGGCTGGACTTGATCTTCTTGCTGAGTAATGGTCTTTGATTCAAGAAGAAATGGTTCATTGTAGAAAGCTTTTTATCCATAAGCTTCTTGATCTCGTTGTCAATGCAGGTTGGATCTTCTCGAAGCTTATGTAGCTTTCAATTCATACTCTTAAACTTTGGGAGTTCTATCAATTAAAAGTCAAAATTAATAATTGTATCAATTTAAATTATGAAGTTTCATAAGTGTATCAATTTACATCCTTCTTCATATTTTTT

Coding sequence (CDS)

ATGATATTCTCTCTTAAATTGATGCAAAAACGTCCGTCTGATTTGGAAGAAATGGCTAACCGACTCGGCTCGCAGCTGTTCATCAGCAGACTGTCATCATACACAACGATTGAACGCCTTGAGAGTCTGTTTTCACCCTTCGGTTCAGTCTCTGAAGCTCGGCTAGTTCGTGATCCAAAAACCCAGAGGCCCAAAGGGTTTGGTTTTGTCACATTTCAATCCCCGGTTGAAGCAAAGAAGGCTCTTCAAGCCATGAATGGTCGGATAGTTGATGGAAGACTGATTTTCGTTGAATTTGCAAAGACTAGGAGACATGGGGAAGATGCTACATCTAGATAA

Protein sequence

MIFSLKLMQKRPSDLEEMANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGEDATSR

Homology

[Close]

BLAST of CmUC03G051870 vs. NCBI nr
Match: XP_038895198.1 (small RNA-binding protein 11, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 191.8 bits (486), Expect = 3.2e-45
Identity = 97/106 (91.51%), Postives = 100/106 (94.34%), Query Frame = 0


Query: 7   LMQKRPSDLEEMANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKG 66
           +MQ   SDLE MANR+GSQLFISRLSSYTTIERLESLFSPFGSVSEARL+RDPKTQRPKG
Sbjct: 1   MMQNHASDLEGMANRVGSQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKG 60

Query: 67  FGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGEDATSR 113
           FGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHG DA SR
Sbjct: 61  FGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDAASR 106

[Close]

BLAST of CmUC03G051870 vs. NCBI nr
Match: XP_022949004.1 (cold-inducible RNA-binding protein B-like [Cucurbita moschata] >XP_022997823.1 cold-inducible RNA-binding protein B-like [Cucurbita maxima])

HSP 1 Score: 172.9 bits (437), Expect = 1.5e-39
Identity = 87/95 (91.58%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 18  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVE 77
           MANRLG+QLFISRLSSYTTIERLE+LFSPFGSVSEARL+RDPKTQRPKGFGFVTFQSP E
Sbjct: 1   MANRLGTQLFISRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDE 60

Query: 78  AKKALQAMNGRIVDGRLIFVEFAKTRRHGEDATSR 113
           AKKALQAM+GRIVDGRLIFVEFAKTR HG DA SR
Sbjct: 61  AKKALQAMDGRIVDGRLIFVEFAKTRGHGVDAASR 95

[Close]

BLAST of CmUC03G051870 vs. NCBI nr
Match: XP_008457543.1 (PREDICTED: cold-inducible RNA-binding protein B [Cucumis melo])

HSP 1 Score: 171.8 bits (434), Expect = 3.4e-39
Identity = 84/94 (89.36%), Postives = 92/94 (97.87%), Query Frame = 0


Query: 18  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVE 77
           MANRLGS+LFISRLSSYTTIERL+SLFSPFGS+S+ARL+RDP+TQRPKGFGFVTFQSPVE
Sbjct: 1   MANRLGSELFISRLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVE 60

Query: 78  AKKALQAMNGRIVDGRLIFVEFAKTRRHGEDATS 112
           AKKALQAM+GRIVDGRLIFVEFAKTR+HG D TS
Sbjct: 61  AKKALQAMDGRIVDGRLIFVEFAKTRKHGVDPTS 94

[Close]

BLAST of CmUC03G051870 vs. NCBI nr
Match: KAG6607208.1 (Cold-inducible RNA-binding protein B, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036894.1 Cold-inducible RNA-binding protein B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 170.6 bits (431), Expect = 7.5e-39
Identity = 86/95 (90.53%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 18  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVE 77
           MANRLG+QLFISRLSSYTTIERLE+LFSPFGSVSEARL+RDPKTQRPKGFGFVTFQSP E
Sbjct: 1   MANRLGTQLFISRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDE 60

Query: 78  AKKALQAMNGRIVDGRLIFVEFAKTRRHGEDATSR 113
           AKKALQAM+GRIVDGRLIFVEFAKT  HG DA SR
Sbjct: 61  AKKALQAMDGRIVDGRLIFVEFAKTSGHGVDAASR 95

[Close]

BLAST of CmUC03G051870 vs. NCBI nr
Match: XP_023523197.1 (cold-inducible RNA-binding protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 170.2 bits (430), Expect = 9.8e-39
Identity = 87/95 (91.58%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 18  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVE 77
           MANRLG+QLFISRLSSYTTIERLESLFSPFGSVSEARL+RDPKTQRPKGFGFVTFQS  E
Sbjct: 1   MANRLGTQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSLDE 60

Query: 78  AKKALQAMNGRIVDGRLIFVEFAKTRRHGEDATSR 113
           AKKAL AMNGRIVDGRLIFVEFAKTR HG DA SR
Sbjct: 61  AKKALHAMNGRIVDGRLIFVEFAKTRGHGVDAASR 95

[Close]

BLAST of CmUC03G051870 vs. ExPASy Swiss-Prot
Match: Q9DED4 (Cold-inducible RNA-binding protein B OS=Xenopus laevis OX=8355 GN=cirbp-b PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.9e-14
Identity = 39/76 (51.32%), Postives = 55/76 (72.37%), Query Frame = 0


Query: 25  QLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQA 84
           +LFI  L+  T  E LE +FS +G +SE  +V+D +T+R +GFGFVTF++P +AK A+ A
Sbjct: 6   KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65

Query: 85  MNGRIVDGRLIFVEFA 101
           MNG+ VDGR I V+ A
Sbjct: 66  MNGKAVDGRQIRVDQA 81

[Close]

BLAST of CmUC03G051870 vs. ExPASy Swiss-Prot
Match: Q28IQ9 (Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX=8364 GN=cirbp PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.1e-14
Identity = 38/76 (50.00%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 25  QLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQA 84
           +LF+  L+  TT E LE +FS +G V+E  +V+D +++R +GFGFVTF++P +AK A+ A
Sbjct: 7   KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66

Query: 85  MNGRIVDGRLIFVEFA 101
           MNG+ VDGR I V+ A
Sbjct: 67  MNGKSVDGRQIRVDQA 82

[Close]

BLAST of CmUC03G051870 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.5e-13
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 22  LGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKA 81
           + S+LFI  LS  TT + L   FS  G V EA++V D  + R KGFGFVTF S  EA+KA
Sbjct: 32  VASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKA 91

Query: 82  LQAMNGRIVDGRLIFVEFAKTRR 105
           L   NG+ ++GR IFV++AK ++
Sbjct: 92  LMEFNGQQLNGRTIFVDYAKAKQ 114

[Close]

BLAST of CmUC03G051870 vs. ExPASy Swiss-Prot
Match: P60826 (Cold-inducible RNA-binding protein OS=Cricetulus griseus OX=10029 GN=CIRBP PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.3e-13
Identity = 38/76 (50.00%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 25  QLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQA 84
           +LF+  LS  T  + LE +FS +G +SE  +V+D +TQR +GFGFVTF++  +AK A+ A
Sbjct: 7   KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 85  MNGRIVDGRLIFVEFA 101
           MNG+ VDGR I V+ A
Sbjct: 67  MNGKSVDGRQIRVDQA 82

[Close]

BLAST of CmUC03G051870 vs. ExPASy Swiss-Prot
Match: Q14011 (Cold-inducible RNA-binding protein OS=Homo sapiens OX=9606 GN=CIRBP PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.3e-13
Identity = 38/76 (50.00%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 25  QLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQA 84
           +LF+  LS  T  + LE +FS +G +SE  +V+D +TQR +GFGFVTF++  +AK A+ A
Sbjct: 7   KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 85  MNGRIVDGRLIFVEFA 101
           MNG+ VDGR I V+ A
Sbjct: 67  MNGKSVDGRQIRVDQA 82

[Close]

BLAST of CmUC03G051870 vs. ExPASy TrEMBL
Match: A0A6J1KF23 (cold-inducible RNA-binding protein B-like OS=Cucurbita maxima OX=3661 GN=LOC111492665 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 7.3e-40
Identity = 87/95 (91.58%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 18  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVE 77
           MANRLG+QLFISRLSSYTTIERLE+LFSPFGSVSEARL+RDPKTQRPKGFGFVTFQSP E
Sbjct: 1   MANRLGTQLFISRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDE 60

Query: 78  AKKALQAMNGRIVDGRLIFVEFAKTRRHGEDATSR 113
           AKKALQAM+GRIVDGRLIFVEFAKTR HG DA SR
Sbjct: 61  AKKALQAMDGRIVDGRLIFVEFAKTRGHGVDAASR 95

[Close]

BLAST of CmUC03G051870 vs. ExPASy TrEMBL
Match: A0A6J1GBJ9 (cold-inducible RNA-binding protein B-like OS=Cucurbita moschata OX=3662 GN=LOC111452474 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 7.3e-40
Identity = 87/95 (91.58%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 18  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVE 77
           MANRLG+QLFISRLSSYTTIERLE+LFSPFGSVSEARL+RDPKTQRPKGFGFVTFQSP E
Sbjct: 1   MANRLGTQLFISRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDE 60

Query: 78  AKKALQAMNGRIVDGRLIFVEFAKTRRHGEDATSR 113
           AKKALQAM+GRIVDGRLIFVEFAKTR HG DA SR
Sbjct: 61  AKKALQAMDGRIVDGRLIFVEFAKTRGHGVDAASR 95

[Close]

BLAST of CmUC03G051870 vs. ExPASy TrEMBL
Match: A0A1S3C5W5 (cold-inducible RNA-binding protein B OS=Cucumis melo OX=3656 GN=LOC103497209 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.6e-39
Identity = 84/94 (89.36%), Postives = 92/94 (97.87%), Query Frame = 0


Query: 18  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVE 77
           MANRLGS+LFISRLSSYTTIERL+SLFSPFGS+S+ARL+RDP+TQRPKGFGFVTFQSPVE
Sbjct: 1   MANRLGSELFISRLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVE 60

Query: 78  AKKALQAMNGRIVDGRLIFVEFAKTRRHGEDATS 112
           AKKALQAM+GRIVDGRLIFVEFAKTR+HG D TS
Sbjct: 61  AKKALQAMDGRIVDGRLIFVEFAKTRKHGVDPTS 94

[Close]

BLAST of CmUC03G051870 vs. ExPASy TrEMBL
Match: A0A0A0KQ26 (Cold-inducible RNA binding protein OS=Cucumis sativus OX=3659 GN=Csa_5G593310 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.2e-34
Identity = 75/85 (88.24%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 18  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVE 77
           MANRLGS+LFISRLSSYTT+ERL++LFSPFGS+SEARL+RDPKT+RPKGFGFVTFQSP E
Sbjct: 1   MANRLGSELFISRLSSYTTLERLKNLFSPFGSISEARLIRDPKTERPKGFGFVTFQSPAE 60

Query: 78  AKKALQAMNGRIVDGRLIFVEFAKT 103
           AKKAL+AM+GRIVDGRLIFVEFAKT
Sbjct: 61  AKKALKAMDGRIVDGRLIFVEFAKT 85

[Close]

BLAST of CmUC03G051870 vs. ExPASy TrEMBL
Match: A0A6J1DM71 (small RNA-binding protein 11, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111022472 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.3e-33
Identity = 76/89 (85.39%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 18  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVE 77
           MAN +GSQ+FISRLSSYTTIERL+SLFS FG+VSEARLVRDPKT RPKGFGFVTFQSPVE
Sbjct: 1   MANGVGSQVFISRLSSYTTIERLKSLFSVFGAVSEARLVRDPKTHRPKGFGFVTFQSPVE 60

Query: 78  AKKALQAMNGRIVDGRLIFVEFAKTRRHG 107
           A+KA++AMNGRIVDGRLIFVEFA TR  G
Sbjct: 61  AEKAIRAMNGRIVDGRLIFVEFANTRGRG 89

[Close]

BLAST of CmUC03G051870 vs. TAIR 10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 119.0 bits (297), Expect = 2.4e-27
Identity = 55/84 (65.48%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 18  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVE 77
           MA R+ +QLF+SRLS+YTT + L  LFSPFG + EARL+RD +TQRPKGFGF+TF S  +
Sbjct: 1   MAKRISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDD 60

Query: 78  AKKALQAMNGRIVDGRLIFVEFAK 102
           A+KAL++++G+IVDGRLIFVE AK
Sbjct: 61  ARKALKSLDGKIVDGRLIFVEVAK 84

[Close]

BLAST of CmUC03G051870 vs. TAIR 10
Match: AT5G59860.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 90.1 bits (222), Expect = 1.2e-18
Identity = 45/73 (61.64%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 29  SRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGR 88
           S LS+YTT + L  LF+PF     ARL++D +TQRPKGFGF+TF+S  +A+KAL+A+NG+
Sbjct: 76  SGLSAYTTDQSLRQLFAPF-----ARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGK 135

Query: 89  IVDGRLIFVEFAK 102
           IV+GRLIFVE AK
Sbjct: 136 IVNGRLIFVETAK 143

[Close]

BLAST of CmUC03G051870 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-14
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 22  LGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKA 81
           + S+LFI  LS  TT + L   FS  G V EA++V D  + R KGFGFVTF S  EA+KA
Sbjct: 32  VASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKA 91

Query: 82  LQAMNGRIVDGRLIFVEFAKTRR 105
           L   NG+ ++GR IFV++AK ++
Sbjct: 92  LMEFNGQQLNGRTIFVDYAKAKQ 114

[Close]

BLAST of CmUC03G051870 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 75.9 bits (185), Expect = 2.3e-14
Identity = 36/80 (45.00%), Postives = 53/80 (66.25%), Query Frame = 0


Query: 24  SQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQ 83
           ++L++S LS  TT + L   F  FG++    +V D    RPKGF F+ +++  EA KA+Q
Sbjct: 77  TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136

Query: 84  AMNGRIVDGRLIFVEFAKTR 104
            M+G+ +DGR+IFVE AKTR
Sbjct: 137 GMHGKFLDGRVIFVEEAKTR 156

[Close]

BLAST of CmUC03G051870 vs. TAIR 10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 71.6 bits (174), Expect = 4.4e-13
Identity = 35/79 (44.30%), Postives = 54/79 (68.35%), Query Frame = 0


Query: 25  QLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQA 84
           +LF+S LS  TT E+L+  F+ FG + +AR++ D  + R KGFGFVT+ +  +A+KA   
Sbjct: 35  RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAE 94

Query: 85  MNGRIVDGRLIFVEFAKTR 104
           MN + +DG +IFV+ A+ R
Sbjct: 95  MNAKFLDGWVIFVDPARPR 113

The following BLAST results are available for this feature:

BLAST of CmUC03G051870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895198.1	3.2e-45	91.51	small RNA-binding protein 11, chloroplastic-like [Benincasa hispida]	[more]
XP_022949004.1	1.5e-39	91.58	cold-inducible RNA-binding protein B-like [Cucurbita moschata] >XP_022997823.1 c...	[more]
XP_008457543.1	3.4e-39	89.36	PREDICTED: cold-inducible RNA-binding protein B [Cucumis melo]	[more]
KAG6607208.1	7.5e-39	90.53	Cold-inducible RNA-binding protein B, partial [Cucurbita argyrosperma subsp. sor...	[more]
XP_023523197.1	9.8e-39	91.58	cold-inducible RNA-binding protein-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmUC03G051870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9DED4	3.9e-14	51.32	Cold-inducible RNA-binding protein B OS=Xenopus laevis OX=8355 GN=cirbp-b PE=1 S...	[more]
Q28IQ9	5.1e-14	50.00	Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX=8364 GN=cirbp PE=2 S...	[more]
Q9FFZ6	1.5e-13	49.40	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
P60826	3.3e-13	50.00	Cold-inducible RNA-binding protein OS=Cricetulus griseus OX=10029 GN=CIRBP PE=2 ...	[more]
Q14011	3.3e-13	50.00	Cold-inducible RNA-binding protein OS=Homo sapiens OX=9606 GN=CIRBP PE=1 SV=1	[more]

BLAST of CmUC03G051870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KF23	7.3e-40	91.58	cold-inducible RNA-binding protein B-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1GBJ9	7.3e-40	91.58	cold-inducible RNA-binding protein B-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A1S3C5W5	1.6e-39	89.36	cold-inducible RNA-binding protein B OS=Cucumis melo OX=3656 GN=LOC103497209 PE=...	[more]
A0A0A0KQ26	1.2e-34	88.24	Cold-inducible RNA binding protein OS=Cucumis sativus OX=3659 GN=Csa_5G593310 PE...	[more]
A0A6J1DM71	2.3e-33	85.39	small RNA-binding protein 11, chloroplastic OS=Momordica charantia OX=3673 GN=LO...	[more]

BLAST of CmUC03G051870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46020.1	2.4e-27	65.48	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59860.1	1.2e-18	61.64	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G06210.1	1.1e-14	49.40	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G73530.1	2.3e-14	45.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G37510.1	4.4e-13	44.30	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 25..98 e-value: 1.4E-25 score: 101.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 26..95 e-value: 1.4E-22 score: 79.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 24..102 score: 19.757713
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 6..112 e-value: 4.9E-30 score: 106.4
None	No IPR available	PANTHER	PTHR48034	TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED	coord: 20..104
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 23..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC03G051870.1	CmUC03G051870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048026	positive regulation of mRNA splicing, via spliceosome
cellular_component	GO:0005689	U12-type spliceosomal complex
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0017069	snRNA binding
molecular_function	GO:0003676	nucleic acid binding