![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
CmUC02G044270 (gene) Watermelon (USVL531) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAACAAGGACAAGATATTTAAGCTAGCAAAGGGTTTCAGAGGCAGGGCCAAGAATTGCATAAGAATTGCCAGAGAGCGGGTGGAGAAGGCTCTCCAATATTCATACCGGGACCGTCGTAATAAGAAGCGAGACATGCGCTCCCTTTGGATACAACGAATCAATGCTGGCACGCGCCTTCATGGGGTATGTCTATTTTATTTGAATGTTCCTCATTAGACTATCACATTGTTTATGTGATCATGATGTGTTGTTGTACCTTTTTAGAATTACTTCATAGACTACCACAATCTTAATTTGGTTTCGTTCTTCCTTTCTTTTCTTGTTTTATTTTAGTTTCCTGAAAAAATATACTAAAATAGAAAAAAAAAGAAAAATAGGATGGTGGATAGGGAGTGGGATTCCAACTACTTCTAGTCTTTGTTCAGAATTTCGATGATAGTGAGTAAGTTTCTTGAGAGAGGGTTGAGGAACTTCTTGTGGGGACGGGTCAATGAGGAGAAGGGGGAGGGTTTCATTTGGTTAAGCGAGATTTGGTGGTGAAGCCATTGGAATTAGGAGGATCAAAGACTGGGAGCCTGAAATTACGTAACGAGGTGCCATTAGCTAAGTGGTTGTGGTTGTTCTTCATGAAGCACGGTACAAAGTTATTATGGGAAAAAATGGCCCGCACCCTCCTAAGTGGGTGGCAAGCATTGTTTCTAAGGGACCTAGTAAAAATCTTTGGTAATCTATTGCATATGGATTCCCTTTTTTCTCTCGGTTCGTTAGATGCTTTGTTCGGGAAGATTTGAAAGTTTACTTTTGGGAAGATTGTTGAGTTTGTGACAACCTTTTTGTGAGTTGTTTCTTCGTTTATACCACAAATCTCAAAAGAAGCACCATTTGGTGGCTTCAATTTTGCCTTCTCCTTTCCTTGGGCTTCAGTCATCCTCTTTTGATTGAGAGGCTGTTGATGTGGTGGTTCTTCTTTGATTTTCTGCAAGACCAACATGTGTTTTTAGGGAGAAAGGATTCTAGGTTTTGGTCTTTTGATCCTTCGAAAGGCTTCTCCTGTAAATCCCCTTTTCACATTCTGTCTGTCTCCCACTCCCCCAGGCTGCCTCAGTTTTTGCCACTTTTTGGAAGAGTTAAATACCAAAGAAGGCCAAACTTTTTTGAATGGCAAGATTTACATGGTAGGGTGAATACTATAGATCATGTTCAACATCATTCTTCCTTCATGTTGCATTTGCAATGGTGCATCATTTGCAGGCAGCAAGAGGACCTTCACCACCTTCTGTGAGGTGGTGATCTAGAAAAGGTGGTTGAGCTTGTTTAGCTTACATTTGGCGTGGAGGAGAGATTGTTTCTTATGATTGAGGGTTTGGTCTTGTTTTTGCCTTTTTCGTGAGAAGGTTGAGGTATTATGACATGCTATTTTTTTGTTCTTTTTTTCTTTGAGGTATCTGGATTGAAAGCAATCATAATTTTTTGAGTGGTGGAATGATCGAGTAAGGAGGTGTGGGAGGGGGTTATGTTCAATTCCTCCTTGTGGACGCTGGTTAATAGGCTCTTTTATAATTTTGACCTTGGTTTGATTTTGTTGTCTCTCACTTTCTTGGTTCTTTCTGATGGTTTTTCTTGTAGGCCCTTGTGTCTATATATATATATATATATATTTTTTTTTTTTTTTTTGCTGCCCTTTGAGATGCTGATCCTTTGATATTCTCACATCAAATTTCTAATTTCCACCTTTGATGTTCCCACATCCTTTAATTTTAACCTTTTAACTTGTCGTTTTCATTCTTTCTAGTTTCTGCAATGTCTGTAATTTTATGCCAACTTGACCTGCCTGGATAAGTTGCATACACTTCACGTGATTCATGAATTTTCGCACTTGTGTTTGAATGGTTTGGTTTTGCAAAGGGAGGAGTGAAAGCCGCTTTAGGTCAAAGAACTACTGTATGCTTGTGTTCTAGGTGTAGGATTCTCATTTTCTGCATCAGTGTGAATTGCCTCTTATTTCCAACTGATATTGAATTCTTTACCAAGTTACTCAAATATTTATCTTCTATGTATTTGGACAATTTGCCATGTAGAGATAGAGATACTGACGTTTCTTTTGTCTACTTCCCTACCATATAAGGTAAACTATGGCAATTTTATGCATGGGCTGATGAAGGAGAACGTCCAACTAAATAGAAAAGTATTATCAGAGCTCTCAATGCACGAGCCTTACAGTTTCAAGGCCCTGGTAGACATCTCTCGTAATGCATTTCCTGGAAACAAGAATGTAGTGTTTCCCCCCAAGAAGGATGCTGCCTCCATGATTGTTTAA ATGAACAAGGACAAGATATTTAAGCTAGCAAAGGGTTTCAGAGGCAGGGCCAAGAATTGCATAAGAATTGCCAGAGAGCGGGTGGAGAAGGCTCTCCAATATTCATACCGGGACCGTCGTAATAAGAAGCGAGACATGCGCTCCCTTTGGATACAACGAATCAATGCTGGCACGCGCCTTCATGGGGTAAACTATGGCAATTTTATGCATGGGCTGATGAAGGAGAACGTCCAACTAAATAGAAAAGTATTATCAGAGCTCTCAATGCACGAGCCTTACAGTTTCAAGGCCCTGGTAGACATCTCTCGTAATGCATTTCCTGGAAACAAGAATGTAGTGTTTCCCCCCAAGAAGGATGCTGCCTCCATGATTGTTTAA ATGAACAAGGACAAGATATTTAAGCTAGCAAAGGGTTTCAGAGGCAGGGCCAAGAATTGCATAAGAATTGCCAGAGAGCGGGTGGAGAAGGCTCTCCAATATTCATACCGGGACCGTCGTAATAAGAAGCGAGACATGCGCTCCCTTTGGATACAACGAATCAATGCTGGCACGCGCCTTCATGGGGTAAACTATGGCAATTTTATGCATGGGCTGATGAAGGAGAACGTCCAACTAAATAGAAAAGTATTATCAGAGCTCTCAATGCACGAGCCTTACAGTTTCAAGGCCCTGGTAGACATCTCTCGTAATGCATTTCCTGGAAACAAGAATGTAGTGTTTCCCCCCAAGAAGGATGCTGCCTCCATGATTGTTTAA MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDAASMIV Homology
BLAST of CmUC02G044270 vs. NCBI nr
Match: XP_008456292.1 (PREDICTED: 50S ribosomal protein L20 [Cucumis melo] >XP_008456294.1 PREDICTED: 50S ribosomal protein L20 [Cucumis melo] >XP_008456295.1 PREDICTED: 50S ribosomal protein L20 [Cucumis melo] >XP_016901960.1 PREDICTED: 50S ribosomal protein L20 [Cucumis melo] >XP_016901961.1 PREDICTED: 50S ribosomal protein L20 [Cucumis melo]) HSP 1 Score: 252.3 bits (643), Expect = 2.2e-63 Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0
BLAST of CmUC02G044270 vs. NCBI nr
Match: XP_004139908.1 (uncharacterized protein LOC101216644 [Cucumis sativus] >XP_031744108.1 uncharacterized protein LOC101216644 [Cucumis sativus] >XP_031744109.1 uncharacterized protein LOC101216644 [Cucumis sativus] >XP_031744110.1 uncharacterized protein LOC101216644 [Cucumis sativus] >KGN46794.1 hypothetical protein Csa_020818 [Cucumis sativus]) HSP 1 Score: 251.5 bits (641), Expect = 3.7e-63 Identity = 124/125 (99.20%), Postives = 125/125 (100.00%), Query Frame = 0
BLAST of CmUC02G044270 vs. NCBI nr
Match: XP_022943497.1 (uncharacterized protein LOC111448251 [Cucurbita moschata] >XP_022943498.1 uncharacterized protein LOC111448251 [Cucurbita moschata] >XP_022943499.1 uncharacterized protein LOC111448251 [Cucurbita moschata] >KAG6570598.1 hypothetical protein SDJN03_29513, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010448.1 rplT [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 250.8 bits (639), Expect = 6.4e-63 Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 0
BLAST of CmUC02G044270 vs. NCBI nr
Match: XP_022985864.1 (uncharacterized protein LOC111483787 [Cucurbita maxima] >XP_022985865.1 uncharacterized protein LOC111483787 [Cucurbita maxima] >XP_022985866.1 uncharacterized protein LOC111483787 [Cucurbita maxima]) HSP 1 Score: 250.4 bits (638), Expect = 8.3e-63 Identity = 123/125 (98.40%), Postives = 124/125 (99.20%), Query Frame = 0
BLAST of CmUC02G044270 vs. NCBI nr
Match: XP_038901625.1 (50S ribosomal protein L20 [Benincasa hispida] >XP_038901626.1 50S ribosomal protein L20 [Benincasa hispida]) HSP 1 Score: 249.6 bits (636), Expect = 1.4e-62 Identity = 123/125 (98.40%), Postives = 124/125 (99.20%), Query Frame = 0
BLAST of CmUC02G044270 vs. ExPASy Swiss-Prot
Match: B6IPJ8 (50S ribosomal protein L20 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=rplT PE=3 SV=1) HSP 1 Score: 137.9 bits (346), Expect = 7.9e-32 Identity = 64/101 (63.37%), Postives = 82/101 (81.19%), Query Frame = 0
BLAST of CmUC02G044270 vs. ExPASy Swiss-Prot
Match: Q3YSX0 (50S ribosomal protein L20 OS=Ehrlichia canis (strain Jake) OX=269484 GN=rplT PE=3 SV=1) HSP 1 Score: 129.8 bits (325), Expect = 2.2e-29 Identity = 61/101 (60.40%), Postives = 81/101 (80.20%), Query Frame = 0
BLAST of CmUC02G044270 vs. ExPASy Swiss-Prot
Match: Q2GHR2 (50S ribosomal protein L20 OS=Ehrlichia chaffeensis (strain ATCC CRL-10679 / Arkansas) OX=205920 GN=rplT PE=3 SV=1) HSP 1 Score: 127.5 bits (319), Expect = 1.1e-28 Identity = 61/101 (60.40%), Postives = 79/101 (78.22%), Query Frame = 0
BLAST of CmUC02G044270 vs. ExPASy Swiss-Prot
Match: Q11KK1 (50S ribosomal protein L20 OS=Chelativorans sp. (strain BNC1) OX=266779 GN=rplT PE=3 SV=1) HSP 1 Score: 126.3 bits (316), Expect = 2.4e-28 Identity = 60/107 (56.07%), Postives = 83/107 (77.57%), Query Frame = 0
BLAST of CmUC02G044270 vs. ExPASy Swiss-Prot
Match: Q5FH69 (50S ribosomal protein L20 OS=Ehrlichia ruminantium (strain Gardel) OX=302409 GN=rplT PE=3 SV=1) HSP 1 Score: 126.3 bits (316), Expect = 2.4e-28 Identity = 57/101 (56.44%), Postives = 81/101 (80.20%), Query Frame = 0
BLAST of CmUC02G044270 vs. ExPASy TrEMBL
Match: A0A1S4E159 (50S ribosomal protein L20 OS=Cucumis melo OX=3656 GN=LOC103496283 PE=3 SV=1) HSP 1 Score: 252.3 bits (643), Expect = 1.1e-63 Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0
BLAST of CmUC02G044270 vs. ExPASy TrEMBL
Match: A0A0A0KD68 (50S ribosomal protein L20 OS=Cucumis sativus OX=3659 GN=Csa_6G135990 PE=3 SV=1) HSP 1 Score: 251.5 bits (641), Expect = 1.8e-63 Identity = 124/125 (99.20%), Postives = 125/125 (100.00%), Query Frame = 0
BLAST of CmUC02G044270 vs. ExPASy TrEMBL
Match: A0A6J1FUI3 (50S ribosomal protein L20 OS=Cucurbita moschata OX=3662 GN=LOC111448251 PE=3 SV=1) HSP 1 Score: 250.8 bits (639), Expect = 3.1e-63 Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 0
BLAST of CmUC02G044270 vs. ExPASy TrEMBL
Match: A0A6J1JCG1 (50S ribosomal protein L20 OS=Cucurbita maxima OX=3661 GN=LOC111483787 PE=3 SV=1) HSP 1 Score: 250.4 bits (638), Expect = 4.0e-63 Identity = 123/125 (98.40%), Postives = 124/125 (99.20%), Query Frame = 0
BLAST of CmUC02G044270 vs. ExPASy TrEMBL
Match: A0A6J1KY75 (50S ribosomal protein L20 OS=Cucurbita maxima OX=3661 GN=LOC111499805 PE=3 SV=1) HSP 1 Score: 244.2 bits (622), Expect = 2.9e-61 Identity = 118/125 (94.40%), Postives = 123/125 (98.40%), Query Frame = 0
BLAST of CmUC02G044270 vs. TAIR 10
Match: AT1G16740.1 (Ribosomal protein L20 ) HSP 1 Score: 211.8 bits (538), Expect = 3.1e-55 Identity = 104/124 (83.87%), Postives = 113/124 (91.13%), Query Frame = 0
BLAST of CmUC02G044270 vs. TAIR 10
Match: ATCG00660.1 (ribosomal protein L20 ) HSP 1 Score: 60.5 bits (145), Expect = 1.1e-09 Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|