CmUC02G043830 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC02G043830
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	DNA-directed RNA polymerase III subunit rpc6
Location	CmU531Chr02: 31819982 .. 31822097 (+)
RNA-Seq Expression	CmUC02G043830
Synteny	CmUC02G043830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTGTTTTTTGGTCAATTTGGTTCATTTTCCTGCCAACAGACATCACTCATTCGGCCTTCTACGTTTCAGACTTCGGAGAAACCGAAACCCCGCTCCCTCTCCATTTTCTGATCAAAACCACTCTCGCCGGACCGCTCTCTGTCTCTCCGCCGTCCCTCGCGGTCTTTTTCCTCTAGGTTGTCAGAACCCTAGCCTTTTAGGGCGCTCAACGTTGCTCTTTCGTTGCCGTTGCTTCTTTCACTCTGCAATTATCGTCTCTAAGACCTTCTGGTGCTAATATTTGATTTGAAGTCGCGGACCTTCAGGTATTTTGCTTAATTTCTCTACGAACTTCCTTGCATACTAGCTGAATCGCAGTATGAACACACATGGATTGCTGGTTTTCCCTCTTTTTTCAAGGGTGGAGTTTATATTGTTGTTGATTTTCCTGATGTGTACTGAGCAATCATTTTCTTAATGGCCCTTTATGACTCGTTCTGCTGTGACTGCCAGTTTTGCTTGTCAAAATTTATGTATGTTTTATCAGTTTCTCAGTTTTAGGTGTACTCGAAAGAAGAAATTTTGCAATGGTTCGTTGATATGTACTTCAGACCAAAATCAACGTAGGATTTTCATGAAATTTTTTAGGACTATTGTTCATAGTCACCCACATCATCAAGATCTCCCTACAAAATTGCATAGAACATTTCTCTGTCATTGAATTTGCAATGTTTTCCCTTAAGTTTTATAGTTTTCAAAACAGCATCATTCTCTTGTCCTTATGAATTGTTGGGAAGAAGTGCTGCTATGTTAGTTGTCATTTTATGCATTTTCTATCAAGGAACAGATGCTCTCTCATTTCAGCAACATTTCCAATTTCCTTAATCACATTTCAACATTCACTCCAAGTTCACATTTCAACGTCATTTTTGTAGGGCTAAATTACAAACAATACCTTAAAACTTTGCTATTTGTTTAAAAACTTTCACTATTCTTTCAAGAGTTAGCAATATTACCCTTGACCTCTAATAAACATTTCAAAACTATCCGTAAAGTAGAAATCTATTAGAATTTTGGCTAAAATTGGGACCAGTATAGAGATGATCCAAAATGGAAATTGGGATCTCAACACCACCGCACTTTTTAAGTCTCAATTTCCATCCAAAATTCTAACAGTTTTTTTTACTTGAAAGGTAGTTTTTTTAGCCTTTTTTGAATATTATTAAAACGTTATCTCTTCATTAATTGTATTAGGCACATATCACTTGATGTTCTAGGAATGAGCAAATCACAAGGGCCTTCATCACTCAAAAGGAAAAGACCAGACTCAGCTCATGGCTCAGGGGGAGCTCTCATTGAGCATGAAAAAGTGCTCCATGATCTGATTTGCAGCAAGCAAAGCATGGGGATTTGGATTGGAGACATTAAAAGAGAAACTAAATATTCTGACAGTGTGGTAACAAAATCACTCAAGTCCCTTCAAGCTAGAGGCCTGGTTAAACTAGTTGAGCACTATCAAAACAAAGGGAAGAAATTCTACCTGTCAAAAGATTTCGAACCATCGAAAGAATTGACTGGCGGTAATTGGTATAGCGACGGGAAGCTCGACCAAGAATACATCAATACTCTTAAAGGGTTCTGTGCTAGAATGATACAGAAGTTGAAGGTGGCCACAATTGAAGGGATTGTAGATTCTTTCAAAAAGAGTGGAGCGTCCAAAGTAGACTTGTCTAGGGAGCAAATTGAAGAGATTGTAAATGCTTTGGTGTTGGACAATGAAGTTATGGAGGTAAAGAGCACTGGTTCAGGGGAGTTTGATTTTATTCCTGTTGGGAAGATTTGTTATAAGTGCTATGCTAAAGGAGGTGTTAAAGGGGAGCCCAAAACAGGAGCCATGGCTTCTATTCCTTGTGGAGTTTGTCCAAGGATTAGTCATTGTACCCCAGACGGCATCATTTCCCCTAGGACTTGTGTATATTACACCAAGTGGTTAGATTTTTAAGTTTAAAGGTTTTTTTTTTTTTTTTTTTCTTAACTGGTTTTAAGAGAATGGATTGGTGAGAATTCCAACATCTGAAGTGTAAGGGAAGATATTAAATGTGTAACCACACAAACTATGCTCGAGTTGACAATTG

mRNA sequence

TTTTGTTTTTTGGTCAATTTGGTTCATTTTCCTGCCAACAGACATCACTCATTCGGCCTTCTACGTTTCAGACTTCGGAGAAACCGAAACCCCGCTCCCTCTCCATTTTCTGATCAAAACCACTCTCGCCGGACCGCTCTCTGTCTCTCCGCCGTCCCTCGCGGTCTTTTTCCTCTAGGTTGTCAGAACCCTAGCCTTTTAGGGCGCTCAACGTTGCTCTTTCGTTGCCGTTGCTTCTTTCACTCTGCAATTATCGTCTCTAAGACCTTCTGGTGCTAATATTTGATTTGAAGTCGCGGACCTTCAGATGAGCAAATCACAAGGGCCTTCATCACTCAAAAGGAAAAGACCAGACTCAGCTCATGGCTCAGGGGGAGCTCTCATTGAGCATGAAAAAGTGCTCCATGATCTGATTTGCAGCAAGCAAAGCATGGGGATTTGGATTGGAGACATTAAAAGAGAAACTAAATATTCTGACAGTGTGGTAACAAAATCACTCAAGTCCCTTCAAGCTAGAGGCCTGGTTAAACTAGTTGAGCACTATCAAAACAAAGGGAAGAAATTCTACCTGTCAAAAGATTTCGAACCATCGAAAGAATTGACTGGCGGTAATTGGTATAGCGACGGGAAGCTCGACCAAGAATACATCAATACTCTTAAAGGGTTCTGTGCTAGAATGATACAGAAGTTGAAGGTGGCCACAATTGAAGGGATTGTAGATTCTTTCAAAAAGAGTGGAGCGTCCAAAGTAGACTTGTCTAGGGAGCAAATTGAAGAGATTGTAAATGCTTTGGTGTTGGACAATGAAGTTATGGAGGTAAAGAGCACTGGTTCAGGGGAGTTTGATTTTATTCCTGTTGGGAAGATTTGTTATAAGTGCTATGCTAAAGGAGGTGTTAAAGGGGAGCCCAAAACAGGAGCCATGGCTTCTATTCCTTGTGGAGTTTGTCCAAGGATTAGTCATTGTACCCCAGACGGCATCATTTCCCCTAGGACTTGTGTATATTACACCAAGTGGTTAGATTTTTAAGTTTAAAGGTTTTTTTTTTTTTTTTTTTCTTAACTGGTTTTAAGAGAATGGATTGGTGAGAATTCCAACATCTGAAGTGTAAGGGAAGATATTAAATGTGTAACCACACAAACTATGCTCGAGTTGACAATTG

Coding sequence (CDS)

ATGAGCAAATCACAAGGGCCTTCATCACTCAAAAGGAAAAGACCAGACTCAGCTCATGGCTCAGGGGGAGCTCTCATTGAGCATGAAAAAGTGCTCCATGATCTGATTTGCAGCAAGCAAAGCATGGGGATTTGGATTGGAGACATTAAAAGAGAAACTAAATATTCTGACAGTGTGGTAACAAAATCACTCAAGTCCCTTCAAGCTAGAGGCCTGGTTAAACTAGTTGAGCACTATCAAAACAAAGGGAAGAAATTCTACCTGTCAAAAGATTTCGAACCATCGAAAGAATTGACTGGCGGTAATTGGTATAGCGACGGGAAGCTCGACCAAGAATACATCAATACTCTTAAAGGGTTCTGTGCTAGAATGATACAGAAGTTGAAGGTGGCCACAATTGAAGGGATTGTAGATTCTTTCAAAAAGAGTGGAGCGTCCAAAGTAGACTTGTCTAGGGAGCAAATTGAAGAGATTGTAAATGCTTTGGTGTTGGACAATGAAGTTATGGAGGTAAAGAGCACTGGTTCAGGGGAGTTTGATTTTATTCCTGTTGGGAAGATTTGTTATAAGTGCTATGCTAAAGGAGGTGTTAAAGGGGAGCCCAAAACAGGAGCCATGGCTTCTATTCCTTGTGGAGTTTGTCCAAGGATTAGTCATTGTACCCCAGACGGCATCATTTCCCCTAGGACTTGTGTATATTACACCAAGTGGTTAGATTTTTAA

Protein sequence

MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDQEYINTLKGFCARMIQKLKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKCYAKGGVKGEPKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF

Homology

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BLAST of CmUC02G043830 vs. NCBI nr
Match: XP_022149571.1 (DNA-directed RNA polymerase III subunit rpc6 isoform X1 [Momordica charantia] >XP_022149572.1 DNA-directed RNA polymerase III subunit rpc6 isoform X1 [Momordica charantia])

HSP 1 Score: 461.8 bits (1187), Expect = 3.5e-126
Identity = 221/240 (92.08%), Postives = 237/240 (98.75%), Query Frame = 0


Query: 1   MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIKRETKYSDSVV 60
           MS+SQGPSSLKRKRPDS+  SGGALIEHEKVL+DLICSKQSMGIWIGDIKRETKY+DS+V
Sbjct: 1   MSRSQGPSSLKRKRPDSS--SGGALIEHEKVLYDLICSKQSMGIWIGDIKRETKYADSIV 60

Query: 61  TKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDQEYINTLKGF 120
           TKSLK+LQA+G++KLVEHYQNKGKKFYLSKDFEPSKELTGGNWYS+GKLD+EYINTLKGF
Sbjct: 61  TKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSEGKLDREYINTLKGF 120

Query: 121 CARMIQKLKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFD 180
           C RMIQK+KVATIEGIVDSFKKSGASKVDLSREQI+EIVNALVLDNEVMEVKSTGSGEFD
Sbjct: 121 CGRMIQKMKVATIEGIVDSFKKSGASKVDLSREQIQEIVNALVLDNEVMEVKSTGSGEFD 180

Query: 181 FIPVGKICYKCYAKGGVKGEPKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF 240
           FIP+GKICYKCYAKGGVKGEPKTGAMASIPCGVCPRISHCTP+G+ISPRTCVYYTKWLDF
Sbjct: 181 FIPIGKICYKCYAKGGVKGEPKTGAMASIPCGVCPRISHCTPNGVISPRTCVYYTKWLDF 238

[Close]

BLAST of CmUC02G043830 vs. NCBI nr
Match: XP_022970903.1 (DNA-directed RNA polymerase III subunit rpc6 [Cucurbita maxima])

HSP 1 Score: 453.0 bits (1164), Expect = 1.6e-123
Identity = 219/240 (91.25%), Postives = 234/240 (97.50%), Query Frame = 0


Query: 1   MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIKRETKYSDSVV 60
           MS+SQGPSSLKRKRP+ AHG GGALIEHEKVL+DLICSKQSMGIWIGD+KRETKY D+VV
Sbjct: 1   MSRSQGPSSLKRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVV 60

Query: 61  TKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDQEYINTLKGF 120
           TKSLK+LQARGL+KLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLD+EYI+TLKGF
Sbjct: 61  TKSLKALQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDREYISTLKGF 120

Query: 121 CARMIQKLKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFD 180
           CARMIQK+KVATIEGIVD+FKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTG+GEFD
Sbjct: 121 CARMIQKMKVATIEGIVDAFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFD 180

Query: 181 FIPVGKICYKCYAKGGVKGEPKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF 240
           FIPVGKICYK YAK GVKGEPKTGAMAS PCGVCPRI+HCTP+GIISPRTCVYYTKWL+F
Sbjct: 181 FIPVGKICYKSYAK-GVKGEPKTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLEF 239

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BLAST of CmUC02G043830 vs. NCBI nr
Match: KAG6604735.1 (DNA-directed RNA polymerase III subunit rpc6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 452.6 bits (1163), Expect = 2.1e-123
Identity = 219/240 (91.25%), Postives = 233/240 (97.08%), Query Frame = 0


Query: 1   MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIKRETKYSDSVV 60
           MS+SQGPSSLKRKRP+ AHG GGALIEHEKVL+DLICSKQSMGIWIGD+KRETKY D+VV
Sbjct: 89  MSRSQGPSSLKRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVV 148

Query: 61  TKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDQEYINTLKGF 120
           TKSLK+LQ RGL+KLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLD+EYI+TLKGF
Sbjct: 149 TKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDREYISTLKGF 208

Query: 121 CARMIQKLKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFD 180
           CARMIQK+KVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTG+GEFD
Sbjct: 209 CARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFD 268

Query: 181 FIPVGKICYKCYAKGGVKGEPKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF 240
           FIPVGKICYK YAK GVKGEPKTGAMAS PCGVCPRI+HCTP+GIISPRTCVYYTKWL+F
Sbjct: 269 FIPVGKICYKSYAK-GVKGEPKTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLEF 327

[Close]

BLAST of CmUC02G043830 vs. NCBI nr
Match: XP_022946967.1 (DNA-directed RNA polymerase III subunit rpc6 [Cucurbita moschata] >XP_023532566.1 DNA-directed RNA polymerase III subunit rpc6 [Cucurbita pepo subsp. pepo] >KAG7034865.1 DNA-directed RNA polymerase III subunit rpc6 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 452.6 bits (1163), Expect = 2.1e-123
Identity = 219/240 (91.25%), Postives = 233/240 (97.08%), Query Frame = 0


Query: 1   MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIKRETKYSDSVV 60
           MS+SQGPSSLKRKRP+ AHG GGALIEHEKVL+DLICSKQSMGIWIGD+KRETKY D+VV
Sbjct: 1   MSRSQGPSSLKRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVV 60

Query: 61  TKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDQEYINTLKGF 120
           TKSLK+LQ RGL+KLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLD+EYI+TLKGF
Sbjct: 61  TKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDREYISTLKGF 120

Query: 121 CARMIQKLKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFD 180
           CARMIQK+KVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTG+GEFD
Sbjct: 121 CARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFD 180

Query: 181 FIPVGKICYKCYAKGGVKGEPKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF 240
           FIPVGKICYK YAK GVKGEPKTGAMAS PCGVCPRI+HCTP+GIISPRTCVYYTKWL+F
Sbjct: 181 FIPVGKICYKSYAK-GVKGEPKTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLEF 239

[Close]

BLAST of CmUC02G043830 vs. NCBI nr
Match: XP_038900531.1 (LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit RPC6-like [Benincasa hispida])

HSP 1 Score: 428.3 bits (1100), Expect = 4.3e-116
Identity = 214/239 (89.54%), Postives = 222/239 (92.89%), Query Frame = 0


Query: 1   MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIKRETKYSDSVV 60
           MSK QGPSSLKRKR DSAHG GGALIEHEKVLHDLICSKQ+MGIWIGDI++ETKY+D VV
Sbjct: 1   MSKPQGPSSLKRKRLDSAHGFGGALIEHEKVLHDLICSKQNMGIWIGDIRKETKYADGVV 60

Query: 61  TKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDQEYINTLKGF 120
            K LKSLQARGL+KLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDQEYINTLKGF
Sbjct: 61  RKLLKSLQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDQEYINTLKGF 120

Query: 121 CARMIQKLKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFD 180
           CARMIQKLKV+TIEG V SFKKSG SKVDLSREQIEEIVNALVLDNEVMEVK TGS EFD
Sbjct: 121 CARMIQKLKVSTIEGTVXSFKKSGTSKVDLSREQIEEIVNALVLDNEVMEVKRTGSREFD 180

Query: 181 FIPVGKICYKCYAKGGVKGEPKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTK-WL 239
           FIPV KICYKCYAK  VKGEPKTGAMASIPCGVCPRISHCT DGIIS RTC+YYTK W+
Sbjct: 181 FIPVRKICYKCYAK-DVKGEPKTGAMASIPCGVCPRISHCTLDGIISHRTCMYYTKCWI 238

[Close]

BLAST of CmUC02G043830 vs. ExPASy Swiss-Prot
Match: Q86JM3 (DNA-directed RNA polymerase III subunit rpc6 OS=Dictyostelium discoideum OX=44689 GN=polr3f PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.4e-24
Identity = 69/241 (28.63%), Postives = 119/241 (49.38%), Query Frame = 0


Query: 1   MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIKRETKYSDSVV 60
           +  S   +S K   P+      G  +E + +++ LI +  + G W  ++K  + Y    +
Sbjct: 52  IQNSDETTSYKEVNPEDQAKFRGLGVE-DFLIYQLIEASSNTGAWTRELKNSSGYQQVQI 111

Query: 61  TKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDQEYINTLKGF 120
           TK LK+L++R L+K V+  Q+  KK Y+  + EPS+E+TGG  YSD   D +YI  +K  
Sbjct: 112 TKILKTLESRKLIKSVKSIQSGRKKVYMLYNMEPSREITGGQLYSDQSYDHQYIQIMKMH 171

Query: 121 CARMIQKLKVATIEGIVDSFKK--SGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGE 180
               +       +  I+   +K    A+   L  E I+ +VN ++ D ++ E++ T  G 
Sbjct: 172 IKTFVDNKGAVDLADIITYLRKVAEEATSQSLGPEDIQALVNTVIYDGDIEEMRDTRMGA 231

Query: 181 FDFIPVGKICYKCYAKGGVKGEPKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWL 240
                 G I YK       K         ++PCG CP    C+ +G++SP+ CVY+ ++L
Sbjct: 232 MLGRRSG-ILYK-----PTKTPIPVNNFCNMPCGNCPVFDICSDNGLVSPKRCVYFKQYL 285

[Close]

BLAST of CmUC02G043830 vs. ExPASy Swiss-Prot
Match: Q2T9S3 (DNA-directed RNA polymerase III subunit RPC6 OS=Bos taurus OX=9913 GN=POLR3F PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 8.9e-24
Identity = 70/230 (30.43%), Postives = 111/230 (48.26%), Query Frame = 0


Query: 29  EKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYL 88
           EK+++ +I    + GIW  DI+ ++    + + K LK+L+++ L+K V+      KK Y+
Sbjct: 92  EKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYM 151

Query: 89  SKDFEPSKELTGGNWYSDGKLDQEYINTLKGFCARMIQKLKVATIEGIVD-------SFK 148
             + +P + +TGG WYSD   + E++  L   C + +Q       E   +       SF 
Sbjct: 152 LYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQNKAETARESKQNPMIQRNSSFA 211

Query: 149 KS----------GASKVDLSREQIEEIVNALVLDNEV-MEVKSTGSGEFDFIPVGKICYK 208
            S          G SKV+LS E IE I+N L+ D +V M + +   G    +      Y+
Sbjct: 212 SSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLYR 271

Query: 209 CYAKGGVKGEPKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF 241
             +       P TG +   PCG+CP    C   G ISP  C+Y T+WL+F
Sbjct: 272 AVS----PIIPPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 316

[Close]

BLAST of CmUC02G043830 vs. ExPASy Swiss-Prot
Match: Q9H1D9 (DNA-directed RNA polymerase III subunit RPC6 OS=Homo sapiens OX=9606 GN=POLR3F PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.0e-23
Identity = 70/230 (30.43%), Postives = 110/230 (47.83%), Query Frame = 0


Query: 29  EKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYL 88
           EK+++ +I    + GIW  DI+ ++    + + K LK+L+++ L+K V+      KK Y+
Sbjct: 92  EKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYM 151

Query: 89  SKDFEPSKELTGGNWYSDGKLDQEYINTLKGFCARMIQKLKVATIEGIVD-------SFK 148
             + +P + +TGG WYSD   + E++  L   C + +Q       E   +       SF 
Sbjct: 152 LYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPMIQRNSSFA 211

Query: 149 KS----------GASKVDLSREQIEEIVNALVLDNEV-MEVKSTGSGEFDFIPVGKICYK 208
            S          G SKV+LS E IE I+N L+ D +V M + +   G    +      Y+
Sbjct: 212 SSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLYR 271

Query: 209 CYAKGGVKGEPKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF 241
                     P TG +   PCG+CP    C   G ISP  C+Y T+WL+F
Sbjct: 272 AVN----PIIPPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 316

[Close]

BLAST of CmUC02G043830 vs. ExPASy Swiss-Prot
Match: Q921X6 (DNA-directed RNA polymerase III subunit RPC6 OS=Mus musculus OX=10090 GN=Polr3f PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.0e-23
Identity = 71/230 (30.87%), Postives = 113/230 (49.13%), Query Frame = 0


Query: 29  EKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYL 88
           EK+++ +I    + GIW  DI+ ++    + + K LK+L+++ L+K V+      KK Y+
Sbjct: 92  EKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYM 151

Query: 89  SKDFEPSKELTGGNWYSDGKLDQEYINTLKGFCARMIQKLKVATIEGIVD-------SFK 148
             + +P + +TGG WYSD   + E++  L   C + +Q       E   +       SF 
Sbjct: 152 LYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPVIQRNSSFA 211

Query: 149 KS----------GASKVDLSREQIEEIVNALVLDNEV-MEVKSTGSGEFDFIPVGKICYK 208
            S          G SKV+LS E IE I+N L+ D +V M + +   G    +      Y+
Sbjct: 212 SSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLYR 271

Query: 209 CYAKGGVKGEPKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF 241
             A   +   P TG + + PCG+CP    C   G ISP  C+Y T+WL+F
Sbjct: 272 --AVNPIL--PPTGVVRA-PCGLCPVFEDCHEGGEISPSNCIYMTEWLEF 316

[Close]

BLAST of CmUC02G043830 vs. ExPASy Swiss-Prot
Match: Q9VD25 (Probable DNA-directed RNA polymerase III subunit RPC6 OS=Drosophila melanogaster OX=7227 GN=CG5380 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.4e-21
Identity = 63/228 (27.63%), Postives = 104/228 (45.61%), Query Frame = 0


Query: 29  EKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYL 88
           EKV++ ++    + GIWI DI+ ++  +   + K LK+L+ + L+K V+      KK Y+
Sbjct: 80  EKVVYGIVEEGGNKGIWIRDIRMKSNLNMIQLNKILKNLETKKLIKAVKSVNASKKKVYM 139

Query: 89  SKDFEPSKELTGGNWYSDGKLDQEYINTLKGFCARMIQ-----------------KLKVA 148
             + EP   +TGG WY D   + E+++ L   C R +Q                 ++   
Sbjct: 140 LYNLEPDLSITGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRDSAEKKREGPLAFKQMSCC 199

Query: 149 TIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKC 208
           T+  +       G SKV+L+   +E I+  +V D     V+    G F +  V       
Sbjct: 200 TVNEVQKFISDLGISKVNLAEADLETILKTVVYDGNAERVRQQ-DGSFVYRAVNAPL--- 259

Query: 209 YAKGGVKGEPKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLD 240
                    P TG +  +PCG+CP I +C+  G ++  TC Y   WLD
Sbjct: 260 ---------PPTG-LVQMPCGICPVIKNCSNCGDVTAITCEYMRDWLD 293

[Close]

BLAST of CmUC02G043830 vs. ExPASy TrEMBL
Match: A0A6J1D8D1 (DNA-directed RNA polymerase III subunit rpc6 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111017972 PE=3 SV=1)

HSP 1 Score: 461.8 bits (1187), Expect = 1.7e-126
Identity = 221/240 (92.08%), Postives = 237/240 (98.75%), Query Frame = 0


Query: 1   MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIKRETKYSDSVV 60
           MS+SQGPSSLKRKRPDS+  SGGALIEHEKVL+DLICSKQSMGIWIGDIKRETKY+DS+V
Sbjct: 1   MSRSQGPSSLKRKRPDSS--SGGALIEHEKVLYDLICSKQSMGIWIGDIKRETKYADSIV 60

Query: 61  TKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDQEYINTLKGF 120
           TKSLK+LQA+G++KLVEHYQNKGKKFYLSKDFEPSKELTGGNWYS+GKLD+EYINTLKGF
Sbjct: 61  TKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSEGKLDREYINTLKGF 120

Query: 121 CARMIQKLKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFD 180
           C RMIQK+KVATIEGIVDSFKKSGASKVDLSREQI+EIVNALVLDNEVMEVKSTGSGEFD
Sbjct: 121 CGRMIQKMKVATIEGIVDSFKKSGASKVDLSREQIQEIVNALVLDNEVMEVKSTGSGEFD 180

Query: 181 FIPVGKICYKCYAKGGVKGEPKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF 240
           FIP+GKICYKCYAKGGVKGEPKTGAMASIPCGVCPRISHCTP+G+ISPRTCVYYTKWLDF
Sbjct: 181 FIPIGKICYKCYAKGGVKGEPKTGAMASIPCGVCPRISHCTPNGVISPRTCVYYTKWLDF 238

[Close]

BLAST of CmUC02G043830 vs. ExPASy TrEMBL
Match: A0A6J1I599 (DNA-directed RNA polymerase III subunit rpc6 OS=Cucurbita maxima OX=3661 GN=LOC111469737 PE=3 SV=1)

HSP 1 Score: 453.0 bits (1164), Expect = 7.9e-124
Identity = 219/240 (91.25%), Postives = 234/240 (97.50%), Query Frame = 0


Query: 1   MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIKRETKYSDSVV 60
           MS+SQGPSSLKRKRP+ AHG GGALIEHEKVL+DLICSKQSMGIWIGD+KRETKY D+VV
Sbjct: 1   MSRSQGPSSLKRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVV 60

Query: 61  TKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDQEYINTLKGF 120
           TKSLK+LQARGL+KLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLD+EYI+TLKGF
Sbjct: 61  TKSLKALQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDREYISTLKGF 120

Query: 121 CARMIQKLKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFD 180
           CARMIQK+KVATIEGIVD+FKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTG+GEFD
Sbjct: 121 CARMIQKMKVATIEGIVDAFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFD 180

Query: 181 FIPVGKICYKCYAKGGVKGEPKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF 240
           FIPVGKICYK YAK GVKGEPKTGAMAS PCGVCPRI+HCTP+GIISPRTCVYYTKWL+F
Sbjct: 181 FIPVGKICYKSYAK-GVKGEPKTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLEF 239

[Close]

BLAST of CmUC02G043830 vs. ExPASy TrEMBL
Match: A0A6J1G553 (DNA-directed RNA polymerase III subunit rpc6 OS=Cucurbita moschata OX=3662 GN=LOC111450988 PE=3 SV=1)

HSP 1 Score: 452.6 bits (1163), Expect = 1.0e-123
Identity = 219/240 (91.25%), Postives = 233/240 (97.08%), Query Frame = 0


Query: 1   MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIKRETKYSDSVV 60
           MS+SQGPSSLKRKRP+ AHG GGALIEHEKVL+DLICSKQSMGIWIGD+KRETKY D+VV
Sbjct: 1   MSRSQGPSSLKRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVV 60

Query: 61  TKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDQEYINTLKGF 120
           TKSLK+LQ RGL+KLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLD+EYI+TLKGF
Sbjct: 61  TKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDREYISTLKGF 120

Query: 121 CARMIQKLKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFD 180
           CARMIQK+KVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTG+GEFD
Sbjct: 121 CARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFD 180

Query: 181 FIPVGKICYKCYAKGGVKGEPKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF 240
           FIPVGKICYK YAK GVKGEPKTGAMAS PCGVCPRI+HCTP+GIISPRTCVYYTKWL+F
Sbjct: 181 FIPVGKICYKSYAK-GVKGEPKTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLEF 239

[Close]

BLAST of CmUC02G043830 vs. ExPASy TrEMBL
Match: A0A6J1D758 (DNA-directed RNA polymerase III subunit rpc6 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111017972 PE=3 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 8.7e-107
Identity = 185/199 (92.96%), Postives = 198/199 (99.50%), Query Frame = 0


Query: 42  MGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTGG 101
           MGIWIGDIKRETKY+DS+VTKSLK+LQA+G++KLVEHYQNKGKKFYLSKDFEPSKELTGG
Sbjct: 1   MGIWIGDIKRETKYADSIVTKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKELTGG 60

Query: 102 NWYSDGKLDQEYINTLKGFCARMIQKLKVATIEGIVDSFKKSGASKVDLSREQIEEIVNA 161
           NWYS+GKLD+EYINTLKGFC RMIQK+KVATIEGIVDSFKKSGASKVDLSREQI+EIVNA
Sbjct: 61  NWYSEGKLDREYINTLKGFCGRMIQKMKVATIEGIVDSFKKSGASKVDLSREQIQEIVNA 120

Query: 162 LVLDNEVMEVKSTGSGEFDFIPVGKICYKCYAKGGVKGEPKTGAMASIPCGVCPRISHCT 221
           LVLDNEVMEVKSTGSGEFDFIP+GKICYKCYAKGGVKGEPKTGAMASIPCGVCPRISHCT
Sbjct: 121 LVLDNEVMEVKSTGSGEFDFIPIGKICYKCYAKGGVKGEPKTGAMASIPCGVCPRISHCT 180

Query: 222 PDGIISPRTCVYYTKWLDF 241
           P+G+ISPRTCVYYTKWLDF
Sbjct: 181 PNGVISPRTCVYYTKWLDF 199

[Close]

BLAST of CmUC02G043830 vs. ExPASy TrEMBL
Match: A0A1S3BL06 (DNA-directed RNA polymerase III subunit rpc6-like OS=Cucumis melo OX=3656 GN=LOC103490992 PE=3 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 8.2e-105
Identity = 191/243 (78.60%), Postives = 219/243 (90.12%), Query Frame = 0


Query: 1   MSKSQGPSSLKRKRPD--SAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIKRETKYSDS 60
           MSKSQGPSSLKRKRPD  + + SGGALI  EKVL+DLICSKQSMGI   D+KRETK+++S
Sbjct: 1   MSKSQGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60

Query: 61  VVTKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDQEYINTLK 120
           VVTKSLKSLQ +GL+K+V+HYQNKGKKFYLS DFEP+KELTGGNWY DG+LD++YINTLK
Sbjct: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120

Query: 121 GFCARMIQKLKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGE 180
             CARMIQ+ K+ TIEGIV+SFK+SGA KV+LSREQIEEIVNALVLDN+VMEVKS+G GE
Sbjct: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180

Query: 181 FDFIPVGKICYK-CYAKGGVKGEPKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKW 240
           F+FIP+GKICYK C   GG+KGEPK GAMASIPCGVCPRI++CTP+GIISP TCVYYTKW
Sbjct: 181 FEFIPIGKICYKYCTQGGGLKGEPKIGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240

[Close]

BLAST of CmUC02G043830 vs. TAIR 10
Match: AT5G23710.1 (DNA binding;DNA-directed RNA polymerases )

HSP 1 Score: 206.1 bits (523), Expect = 3.2e-53
Identity = 107/232 (46.12%), Postives = 143/232 (61.64%), Query Frame = 0


Query: 11  KRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQAR 70
           KRKRPD     G     HEK L DLI   Q  G  + ++KRE     ++VT+ + SL+ +
Sbjct: 3   KRKRPDPKSSGGDLNEPHEKKLLDLIRINQGRGATMFELKREKTIPATIVTRLIASLRKK 62

Query: 71  GLVKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDQEYINTLKGFCARMIQ--KL 130
            L+K V +  NKG K YL+ +FEP  ELTGG WY+DG LD   I  LK  C  +++  + 
Sbjct: 63  NLIKEVANMNNKGVKHYLAMEFEPCSELTGGEWYTDGALDLSKIEDLKAKCVMILERHRQ 122

Query: 131 KVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKIC 190
           +V T+E +   F K    +  LS +Q +EI+  L+LDN +MEVKS G  EF    +G++C
Sbjct: 123 RVVTLEVLCGYFVK----EEKLSVDQTKEILKNLILDNLIMEVKSNGMNEFASTRIGEVC 182

Query: 191 YKCYAKGGVKGEPKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF 241
           Y+   K    GEP+ GA ASIPCGVCP I+ C+PDG+ISP TCVY+ KWLDF
Sbjct: 183 YRLTGKKFGNGEPRAGAFASIPCGVCPHIAICSPDGVISPTTCVYFQKWLDF 230

The following BLAST results are available for this feature:

BLAST of CmUC02G043830 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022149571.1	3.5e-126	92.08	DNA-directed RNA polymerase III subunit rpc6 isoform X1 [Momordica charantia] >X...	[more]
XP_022970903.1	1.6e-123	91.25	DNA-directed RNA polymerase III subunit rpc6 [Cucurbita maxima]	[more]
KAG6604735.1	2.1e-123	91.25	DNA-directed RNA polymerase III subunit rpc6, partial [Cucurbita argyrosperma su...	[more]
XP_022946967.1	2.1e-123	91.25	DNA-directed RNA polymerase III subunit rpc6 [Cucurbita moschata] >XP_023532566....	[more]
XP_038900531.1	4.3e-116	89.54	LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit RPC6-like [Benincas...	[more]

BLAST of CmUC02G043830 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q86JM3	1.4e-24	28.63	DNA-directed RNA polymerase III subunit rpc6 OS=Dictyostelium discoideum OX=4468...	[more]
Q2T9S3	8.9e-24	30.43	DNA-directed RNA polymerase III subunit RPC6 OS=Bos taurus OX=9913 GN=POLR3F PE=...	[more]
Q9H1D9	2.0e-23	30.43	DNA-directed RNA polymerase III subunit RPC6 OS=Homo sapiens OX=9606 GN=POLR3F P...	[more]
Q921X6	2.0e-23	30.87	DNA-directed RNA polymerase III subunit RPC6 OS=Mus musculus OX=10090 GN=Polr3f ...	[more]
Q9VD25	2.4e-21	27.63	Probable DNA-directed RNA polymerase III subunit RPC6 OS=Drosophila melanogaster...	[more]

BLAST of CmUC02G043830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D8D1	1.7e-126	92.08	DNA-directed RNA polymerase III subunit rpc6 isoform X1 OS=Momordica charantia O...	[more]
A0A6J1I599	7.9e-124	91.25	DNA-directed RNA polymerase III subunit rpc6 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1G553	1.0e-123	91.25	DNA-directed RNA polymerase III subunit rpc6 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1D758	8.7e-107	92.96	DNA-directed RNA polymerase III subunit rpc6 isoform X2 OS=Momordica charantia O...	[more]
A0A1S3BL06	8.2e-105	78.60	DNA-directed RNA polymerase III subunit rpc6-like OS=Cucumis melo OX=3656 GN=LOC...	[more]

BLAST of CmUC02G043830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G23710.1	3.2e-53	46.12	DNA binding;DNA-directed RNA polymerases	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 27..90 e-value: 3.1E-14 score: 54.7
IPR007832	RNA polymerase Rpc34	PFAM	PF05158	RNA_pol_Rpc34	coord: 27..127 e-value: 1.1E-24 score: 87.4 coord: 130..239 e-value: 3.4E-14 score: 53.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
IPR016049	RNA polymerase Rpc34-like	PANTHER	PTHR12780	RNA POLYMERASE III DNA DIRECTED , 39KD SUBUNIT-RELATED	coord: 23..240
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 27..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC02G043830.1	CmUC02G043830.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006383	transcription by RNA polymerase III
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0008168	methyltransferase activity