CmUC02G042530 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC02G042530
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like
Location	CmU531Chr02: 30499473 .. 30500015 (+)
RNA-Seq Expression	CmUC02G042530
Synteny	CmUC02G042530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTGTTTTCAGAATCATCATCCAATAATCCCACTACTTACACCGCCGCCGCCACCACCACCACACCACCCGCCGCCACCCCGAGCCGGTACGAGAATCAAAAACGGAGAGATTGGAATACGTTTTGCCAATACCTCCGTAACCACCGGCCGCCGTTGGCTCTTCAGATGTGCAGCGGCGCTCACGTGCTGGAATTCCTCCGTTACTTAGATCAGTTCGGGAAGACAAAAGTACACAACCAAACCTGCCCGTTCTTCGGGCTGCCCAACCCACCTGCCCCCTGCCCGTGCCCCTTGAGACAAGCGTGGGGCAGCCTAGACGCTCTCATCGGCCGGCTCCGGGCAGCCTATGAAGAGAACGGCGGACGGGCAGAGGGAAACCCATTTGGAGCAAGAGCTGTTCGTTTGTATTTAAGGGAAGTTCGTGACTTTCAAGCCAAAGCAAGAGGTGTTAGTTATGAGAAGAAGAGGAAAAGGCCAAAGCAAAAACTTACTAATTCTTCAACTCATGATCATCATCAAGATCCTACAACTTCATGA

mRNA sequence

ATGGATTTGTTTTCAGAATCATCATCCAATAATCCCACTACTTACACCGCCGCCGCCACCACCACCACACCACCCGCCGCCACCCCGAGCCGGTACGAGAATCAAAAACGGAGAGATTGGAATACGTTTTGCCAATACCTCCGTAACCACCGGCCGCCGTTGGCTCTTCAGATGTGCAGCGGCGCTCACGTGCTGGAATTCCTCCGTTACTTAGATCAGTTCGGGAAGACAAAAGTACACAACCAAACCTGCCCGTTCTTCGGGCTGCCCAACCCACCTGCCCCCTGCCCGTGCCCCTTGAGACAAGCGTGGGGCAGCCTAGACGCTCTCATCGGCCGGCTCCGGGCAGCCTATGAAGAGAACGGCGGACGGGCAGAGGGAAACCCATTTGGAGCAAGAGCTGTTCGTTTGTATTTAAGGGAAGTTCGTGACTTTCAAGCCAAAGCAAGAGGTGTTAGTTATGAGAAGAAGAGGAAAAGGCCAAAGCAAAAACTTACTAATTCTTCAACTCATGATCATCATCAAGATCCTACAACTTCATGA

Coding sequence (CDS)

ATGGATTTGTTTTCAGAATCATCATCCAATAATCCCACTACTTACACCGCCGCCGCCACCACCACCACACCACCCGCCGCCACCCCGAGCCGGTACGAGAATCAAAAACGGAGAGATTGGAATACGTTTTGCCAATACCTCCGTAACCACCGGCCGCCGTTGGCTCTTCAGATGTGCAGCGGCGCTCACGTGCTGGAATTCCTCCGTTACTTAGATCAGTTCGGGAAGACAAAAGTACACAACCAAACCTGCCCGTTCTTCGGGCTGCCCAACCCACCTGCCCCCTGCCCGTGCCCCTTGAGACAAGCGTGGGGCAGCCTAGACGCTCTCATCGGCCGGCTCCGGGCAGCCTATGAAGAGAACGGCGGACGGGCAGAGGGAAACCCATTTGGAGCAAGAGCTGTTCGTTTGTATTTAAGGGAAGTTCGTGACTTTCAAGCCAAAGCAAGAGGTGTTAGTTATGAGAAGAAGAGGAAAAGGCCAAAGCAAAAACTTACTAATTCTTCAACTCATGATCATCATCAAGATCCTACAACTTCATGA

Protein sequence

MDLFSESSSNNPTTYTAAATTTTPPAATPSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKLTNSSTHDHHQDPTTS

Homology

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BLAST of CmUC02G042530 vs. NCBI nr
Match: XP_038890681.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Benincasa hispida])

HSP 1 Score: 335.1 bits (858), Expect = 3.7e-88
Identity = 168/186 (90.32%), Postives = 170/186 (91.40%), Query Frame = 0


Query: 1   MDLFSESSSNNPTTYTAAAT--TTTPP-----AATPSRYENQKRRDWNTFCQYLRNHRPP 60
           MDLFSESSSN PTTYT  AT   T PP     AATPSRYENQKRRDWNTFCQYLRNHRPP
Sbjct: 1   MDLFSESSSNPPTTYTTTATVAATAPPTASASAATPSRYENQKRRDWNTFCQYLRNHRPP 60

Query: 61  LALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGR 120
           LALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGR
Sbjct: 61  LALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGR 120

Query: 121 LRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKLTNSSTHDH 180
           LRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK+TNSS    
Sbjct: 121 LRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKVTNSSATHD 180

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BLAST of CmUC02G042530 vs. NCBI nr
Match: XP_011648733.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 [Cucumis sativus] >KGN60768.1 hypothetical protein Csa_019356 [Cucumis sativus])

HSP 1 Score: 332.0 bits (850), Expect = 3.1e-87
Identity = 168/190 (88.42%), Postives = 170/190 (89.47%), Query Frame = 0


Query: 1   MDLFSESSSNNPTTYTAAATTTTPP---------AATPSRYENQKRRDWNTFCQYLRNHR 60
           MDLFSESSSNN +T T   TTTTPP         A TPSRYENQKRRDWNTFCQYLRNHR
Sbjct: 1   MDLFSESSSNN-STPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHR 60

Query: 61  PPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALI 120
           PPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALI
Sbjct: 61  PPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALI 120

Query: 121 GRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKLTNSS-- 180
           GRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK+  SS  
Sbjct: 121 GRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTT 180

[Close]

BLAST of CmUC02G042530 vs. NCBI nr
Match: XP_008456451.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis melo] >KAA0063568.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis melo var. makuwa] >TYJ97894.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 330.9 bits (847), Expect = 7.0e-87
Identity = 170/192 (88.54%), Postives = 171/192 (89.06%), Query Frame = 0


Query: 1   MDLFSESSSN--NPTTYTAAATTTTPP---------AATPSRYENQKRRDWNTFCQYLRN 60
           MDLFSESSSN  NPTT T   TTTTPP         A TPSRYENQKRRDWNTFCQYLRN
Sbjct: 1   MDLFSESSSNNDNPTTTT---TTTTPPTATTSAAASATTPSRYENQKRRDWNTFCQYLRN 60

Query: 61  HRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDA 120
           HRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDA
Sbjct: 61  HRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDA 120

Query: 121 LIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKLTNSS 180
           LIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK+  SS
Sbjct: 121 LIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSS 180

[Close]

BLAST of CmUC02G042530 vs. NCBI nr
Match: XP_022965962.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita maxima])

HSP 1 Score: 302.4 bits (773), Expect = 2.7e-78
Identity = 155/186 (83.33%), Postives = 158/186 (84.95%), Query Frame = 0


Query: 1   MDLFSESSSNNPTTY-------TAAATTTTPP----------AATPSRYENQKRRDWNTF 60
           MDLFSESSS NPT Y        AAA  T  P          AATPSRYENQKRRDWNTF
Sbjct: 1   MDLFSESSS-NPTPYDTTNTAAAAAAVVTACPSPSSSSSATAAATPSRYENQKRRDWNTF 60

Query: 61  CQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQA 120
           CQYLRNHRPPL+L MCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQA
Sbjct: 61  CQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQA 120

Query: 121 WGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQ 170
           WGSLDALIGRLRAAYEENGGR E NPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQ
Sbjct: 121 WGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQ 180

[Close]

BLAST of CmUC02G042530 vs. NCBI nr
Match: KAG6586335.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 302.0 bits (772), Expect = 3.5e-78
Identity = 154/184 (83.70%), Postives = 158/184 (85.87%), Query Frame = 0


Query: 1   MDLFSESSSNNPTTY-----TAAATTTTPPA----------ATPSRYENQKRRDWNTFCQ 60
           MDLFSESSS NPT Y      AAA  T  P+          ATPSRYENQKRRDWNTFCQ
Sbjct: 1   MDLFSESSS-NPTPYDTTNTAAAAVVTACPSPSSSSSATATATPSRYENQKRRDWNTFCQ 60

Query: 61  YLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWG 120
           YLRNHRPPL+L MCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWG
Sbjct: 61  YLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWG 120

Query: 121 SLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKL 170
           SLDALIGRLRAAYEENGGR E NPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK+
Sbjct: 121 SLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKI 180

[Close]

BLAST of CmUC02G042530 vs. ExPASy Swiss-Prot
Match: Q6NNI3 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana OX=3702 GN=LSH1 PE=1 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.6e-70
Identity = 130/160 (81.25%), Postives = 139/160 (86.88%), Query Frame = 0


Query: 1   MDLFSESSSNNPTTYTAAATTTTPPAATPSRYENQKRRDWNTFCQYLRNHRPPLALQMCS 60
           MDL S   + NP     ++T  TPP++  SRYENQKRRDWNTFCQYLRNHRPPL+L  CS
Sbjct: 1   MDLISHQPNKNPN----SSTQLTPPSS--SRYENQKRRDWNTFCQYLRNHRPPLSLPSCS 60

Query: 61  GAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEE 120
           GAHVLEFLRYLDQFGKTKVH+Q C FFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEE
Sbjct: 61  GAHVLEFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEE 120

Query: 121 NGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKR 161
           NGG  E NPFG+RAVRL+LREVRDFQAKARGVSYEKKRKR
Sbjct: 121 NGGPPEANPFGSRAVRLFLREVRDFQAKARGVSYEKKRKR 154

[Close]

BLAST of CmUC02G042530 vs. ExPASy Swiss-Prot
Match: Q9M836 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 OS=Arabidopsis thaliana OX=3702 GN=LSH2 PE=1 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 2.9e-67
Identity = 127/173 (73.41%), Postives = 144/173 (83.24%), Query Frame = 0


Query: 1   MDLFSESSSN-NPTTYTAAATT---TTPPAATPSRYENQKRRDWNTFCQYLRNHRPPLAL 60
           MDL S++ +N NP T  +  T    ++PP++  SRYENQKRRDWNTFCQYLRNH PPL+L
Sbjct: 1   MDLISQNHNNRNPNTSLSTQTPSSFSSPPSS--SRYENQKRRDWNTFCQYLRNHHPPLSL 60

Query: 61  QMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRA 120
             CSGAHVL+FLRYLDQFGKTKVH+Q C FFGLPNPPAPCPCPLRQAWGSLDALIGRLRA
Sbjct: 61  ASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRA 120

Query: 121 AYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKLTNSS 170
           AYEENGG  E +PFG+R+VR++LREVRDFQAK+RGVSYEKKRKR   K    S
Sbjct: 121 AYEENGGAPETSPFGSRSVRIFLREVRDFQAKSRGVSYEKKRKRVNNKQITQS 171

[Close]

BLAST of CmUC02G042530 vs. ExPASy Swiss-Prot
Match: Q7XDD0 (Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.1e-65
Identity = 124/170 (72.94%), Postives = 136/170 (80.00%), Query Frame = 0


Query: 19  ATTTTPPAATPSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTK 78
           AT+ +   A+PSRYE+QKRRDWNTF QYLRNHRPPL+L  CSGAHVLEFLRYLDQFGKTK
Sbjct: 28  ATSASAAGASPSRYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTK 87

Query: 79  VHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLY 138
           VH   CPFFG P PPAPCPCPLRQAWGSLDAL+GRLRAAYEENGGR E NPFGARAVRLY
Sbjct: 88  VHAPACPFFGHPAPPAPCPCPLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAVRLY 147

Query: 139 LREVRDFQAKARGVSYE-KKRKRPKQKLTNSSTHD----------HHQDP 178
           LREVR+ QA+ARGVSYE KKRK+P    + ++ HD          HH  P
Sbjct: 148 LREVREHQARARGVSYEKKKRKKPPHPSSAAAAHDDAANGALHHHHHMPP 197

[Close]

BLAST of CmUC02G042530 vs. ExPASy Swiss-Prot
Match: O82268 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LSH3 PE=1 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 7.8e-65
Identity = 125/171 (73.10%), Postives = 139/171 (81.29%), Query Frame = 0


Query: 9   SNNPTTYTAAA--------TTTTPPAATPSRYENQKRRDWNTFCQYLRNHRPPLALQMCS 68
           SNN ++ T A         ++++ P+A  SRYENQKRRDWNTF QYLRNHRPPL+L  CS
Sbjct: 24  SNNSSSVTGATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCS 83

Query: 69  GAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEE 128
           GAHVLEFLRYLDQFGKTKVH   C F+G PNPPAPCPCPLRQAWGSLDALIGRLRAA+EE
Sbjct: 84  GAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEE 143

Query: 129 NGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYE-KKRKRPKQKLTNSST 171
           NGG+ E NPFGARAVRLYLREVRD Q+KARGVSYE KKRKRP    + SS+
Sbjct: 144 NGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRPLPSSSTSSS 194

[Close]

BLAST of CmUC02G042530 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 6.6e-64
Identity = 127/170 (74.71%), Postives = 133/170 (78.24%), Query Frame = 0


Query: 8   SSNNPTTYTAAATTTTPPAATP-----------SRYENQKRRDWNTFCQYLRNHRPPLAL 67
           S N      AAATTTT  +++            SRYENQKRRDWNTF QYLRNHRPPL+L
Sbjct: 14  SHNTNLMIAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSL 73

Query: 68  QMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRA 127
             CSGAHVLEFLRYLDQFGKTKVH   CPFFG PNPPAPC CPLRQAWGSLDALIGRLRA
Sbjct: 74  SRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRA 133

Query: 128 AYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYE-KKRKRPKQKL 166
           A+EENGG  E NPFGARAVRLYLREVRD QAKARG+SYE KKRKRP   L
Sbjct: 134 AFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPPPPL 183

[Close]

BLAST of CmUC02G042530 vs. ExPASy TrEMBL
Match: A0A0A0LG60 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G009550 PE=3 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.5e-87
Identity = 168/190 (88.42%), Postives = 170/190 (89.47%), Query Frame = 0


Query: 1   MDLFSESSSNNPTTYTAAATTTTPP---------AATPSRYENQKRRDWNTFCQYLRNHR 60
           MDLFSESSSNN +T T   TTTTPP         A TPSRYENQKRRDWNTFCQYLRNHR
Sbjct: 1   MDLFSESSSNN-STPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHR 60

Query: 61  PPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALI 120
           PPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALI
Sbjct: 61  PPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALI 120

Query: 121 GRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKLTNSS-- 180
           GRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK+  SS  
Sbjct: 121 GRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTT 180

[Close]

BLAST of CmUC02G042530 vs. ExPASy TrEMBL
Match: A0A5D3BFP5 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G001100 PE=3 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 3.4e-87
Identity = 170/192 (88.54%), Postives = 171/192 (89.06%), Query Frame = 0


Query: 1   MDLFSESSSN--NPTTYTAAATTTTPP---------AATPSRYENQKRRDWNTFCQYLRN 60
           MDLFSESSSN  NPTT T   TTTTPP         A TPSRYENQKRRDWNTFCQYLRN
Sbjct: 1   MDLFSESSSNNDNPTTTT---TTTTPPTATTSAAASATTPSRYENQKRRDWNTFCQYLRN 60

Query: 61  HRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDA 120
           HRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDA
Sbjct: 61  HRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDA 120

Query: 121 LIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKLTNSS 180
           LIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK+  SS
Sbjct: 121 LIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSS 180

[Close]

BLAST of CmUC02G042530 vs. ExPASy TrEMBL
Match: A0A1S3C396 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like OS=Cucumis melo OX=3656 GN=LOC103496393 PE=3 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 3.4e-87
Identity = 170/192 (88.54%), Postives = 171/192 (89.06%), Query Frame = 0


Query: 1   MDLFSESSSN--NPTTYTAAATTTTPP---------AATPSRYENQKRRDWNTFCQYLRN 60
           MDLFSESSSN  NPTT T   TTTTPP         A TPSRYENQKRRDWNTFCQYLRN
Sbjct: 1   MDLFSESSSNNDNPTTTT---TTTTPPTATTSAAASATTPSRYENQKRRDWNTFCQYLRN 60

Query: 61  HRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDA 120
           HRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDA
Sbjct: 61  HRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDA 120

Query: 121 LIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKLTNSS 180
           LIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK+  SS
Sbjct: 121 LIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSS 180

[Close]

BLAST of CmUC02G042530 vs. ExPASy TrEMBL
Match: A0A6J1HLQ5 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like OS=Cucurbita maxima OX=3661 GN=LOC111465684 PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.3e-78
Identity = 155/186 (83.33%), Postives = 158/186 (84.95%), Query Frame = 0


Query: 1   MDLFSESSSNNPTTY-------TAAATTTTPP----------AATPSRYENQKRRDWNTF 60
           MDLFSESSS NPT Y        AAA  T  P          AATPSRYENQKRRDWNTF
Sbjct: 1   MDLFSESSS-NPTPYDTTNTAAAAAAVVTACPSPSSSSSATAAATPSRYENQKRRDWNTF 60

Query: 61  CQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQA 120
           CQYLRNHRPPL+L MCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQA
Sbjct: 61  CQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQA 120

Query: 121 WGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQ 170
           WGSLDALIGRLRAAYEENGGR E NPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQ
Sbjct: 121 WGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQ 180

[Close]

BLAST of CmUC02G042530 vs. ExPASy TrEMBL
Match: A0A6J1CPQ1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like OS=Momordica charantia OX=3673 GN=LOC111013011 PE=3 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 2.2e-78
Identity = 154/186 (82.80%), Postives = 163/186 (87.63%), Query Frame = 0


Query: 1   MDLFSESSS-NNPTTYTAAATTTTPPA-----ATPSRYENQKRRDWNTFCQYLRNHRPPL 60
           MDLF+ESSS NN  + +AAA  ++PP+     ATPSRYENQKRRDWNTFCQYLRNHRPPL
Sbjct: 1   MDLFAESSSNNNNNSGSAAAPCSSPPSSSSSGATPSRYENQKRRDWNTFCQYLRNHRPPL 60

Query: 61  ALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRL 120
           AL MCSGAHVLEFLRYLDQFGKTKVHNQ CPFFGLPNPPAPCPCPLRQAWGSLDALIGRL
Sbjct: 61  ALPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRL 120

Query: 121 RAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKLTNSSTHDHH 180
           RAAY ENG R E NPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK+TNS+     
Sbjct: 121 RAAYXENGFRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKITNST----- 180

[Close]

BLAST of CmUC02G042530 vs. TAIR 10
Match: AT5G28490.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 266.9 bits (681), Expect = 1.2e-71
Identity = 130/160 (81.25%), Postives = 139/160 (86.88%), Query Frame = 0


Query: 1   MDLFSESSSNNPTTYTAAATTTTPPAATPSRYENQKRRDWNTFCQYLRNHRPPLALQMCS 60
           MDL S   + NP     ++T  TPP++  SRYENQKRRDWNTFCQYLRNHRPPL+L  CS
Sbjct: 1   MDLISHQPNKNPN----SSTQLTPPSS--SRYENQKRRDWNTFCQYLRNHRPPLSLPSCS 60

Query: 61  GAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEE 120
           GAHVLEFLRYLDQFGKTKVH+Q C FFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEE
Sbjct: 61  GAHVLEFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEE 120

Query: 121 NGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKR 161
           NGG  E NPFG+RAVRL+LREVRDFQAKARGVSYEKKRKR
Sbjct: 121 NGGPPEANPFGSRAVRLFLREVRDFQAKARGVSYEKKRKR 154

[Close]

BLAST of CmUC02G042530 vs. TAIR 10
Match: AT3G04510.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 256.1 bits (653), Expect = 2.0e-68
Identity = 127/173 (73.41%), Postives = 144/173 (83.24%), Query Frame = 0


Query: 1   MDLFSESSSN-NPTTYTAAATT---TTPPAATPSRYENQKRRDWNTFCQYLRNHRPPLAL 60
           MDL S++ +N NP T  +  T    ++PP++  SRYENQKRRDWNTFCQYLRNH PPL+L
Sbjct: 1   MDLISQNHNNRNPNTSLSTQTPSSFSSPPSS--SRYENQKRRDWNTFCQYLRNHHPPLSL 60

Query: 61  QMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRA 120
             CSGAHVL+FLRYLDQFGKTKVH+Q C FFGLPNPPAPCPCPLRQAWGSLDALIGRLRA
Sbjct: 61  ASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRA 120

Query: 121 AYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKLTNSS 170
           AYEENGG  E +PFG+R+VR++LREVRDFQAK+RGVSYEKKRKR   K    S
Sbjct: 121 AYEENGGAPETSPFGSRSVRIFLREVRDFQAKSRGVSYEKKRKRVNNKQITQS 171

[Close]

BLAST of CmUC02G042530 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 248.1 bits (632), Expect = 5.6e-66
Identity = 125/171 (73.10%), Postives = 139/171 (81.29%), Query Frame = 0


Query: 9   SNNPTTYTAAA--------TTTTPPAATPSRYENQKRRDWNTFCQYLRNHRPPLALQMCS 68
           SNN ++ T A         ++++ P+A  SRYENQKRRDWNTF QYLRNHRPPL+L  CS
Sbjct: 24  SNNSSSVTGATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCS 83

Query: 69  GAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEE 128
           GAHVLEFLRYLDQFGKTKVH   C F+G PNPPAPCPCPLRQAWGSLDALIGRLRAA+EE
Sbjct: 84  GAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEE 143

Query: 129 NGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYE-KKRKRPKQKLTNSST 171
           NGG+ E NPFGARAVRLYLREVRD Q+KARGVSYE KKRKRP    + SS+
Sbjct: 144 NGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRPLPSSSTSSS 194

[Close]

BLAST of CmUC02G042530 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 245.0 bits (624), Expect = 4.7e-65
Identity = 127/170 (74.71%), Postives = 133/170 (78.24%), Query Frame = 0


Query: 8   SSNNPTTYTAAATTTTPPAATP-----------SRYENQKRRDWNTFCQYLRNHRPPLAL 67
           S N      AAATTTT  +++            SRYENQKRRDWNTF QYLRNHRPPL+L
Sbjct: 14  SHNTNLMIAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSL 73

Query: 68  QMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRA 127
             CSGAHVLEFLRYLDQFGKTKVH   CPFFG PNPPAPC CPLRQAWGSLDALIGRLRA
Sbjct: 74  SRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRA 133

Query: 128 AYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYE-KKRKRPKQKL 166
           A+EENGG  E NPFGARAVRLYLREVRD QAKARG+SYE KKRKRP   L
Sbjct: 134 AFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPPPPL 183

[Close]

BLAST of CmUC02G042530 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 235.3 bits (599), Expect = 3.7e-62
Identity = 109/138 (78.99%), Postives = 121/138 (87.68%), Query Frame = 0


Query: 25  PAATPSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTC 84
           P ATPSRYE+QKRRDWNTF QYL+NH+PPLAL  CSGAHV+EFL+YLDQFGKTKVH   C
Sbjct: 25  PPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAAC 84

Query: 85  PFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRD 144
           P+FG   PP+PC CPL+QAWGSLDALIGRLRAAYEENGGR + NPF ARAVR+YLREVR+
Sbjct: 85  PYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRE 144

Query: 145 FQAKARGVSYE-KKRKRP 162
            QAKARG+ YE KKRKRP
Sbjct: 145 SQAKARGIPYEKKKRKRP 162

The following BLAST results are available for this feature:

BLAST of CmUC02G042530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890681.1	3.7e-88	90.32	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Benincasa hispida]	[more]
XP_011648733.1	3.1e-87	88.42	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 [Cucumis sativus] >KGN60768.1 hypothe...	[more]
XP_008456451.1	7.0e-87	88.54	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis melo] >KAA00...	[more]
XP_022965962.1	2.7e-78	83.33	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita maxima]	[more]
KAG6586335.1	3.5e-78	83.70	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, partial [Cucurbita argyrosperma subs...	[more]

BLAST of CmUC02G042530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NNI3	1.6e-70	81.25	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q9M836	2.9e-67	73.41	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q7XDD0	2.1e-65	72.94	Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1	[more]
O82268	7.8e-65	73.10	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q9LW68	6.6e-64	74.71	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]

BLAST of CmUC02G042530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LG60	1.5e-87	88.42	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G009550 PE=3 S...	[more]
A0A5D3BFP5	3.4e-87	88.54	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3C396	3.4e-87	88.54	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1HLQ5	1.3e-78	83.33	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1CPQ1	2.2e-78	82.80	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like OS=Momordica charantia OX=3673 G...	[more]

BLAST of CmUC02G042530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G28490.1	1.2e-71	81.25	Protein of unknown function (DUF640)	[more]
AT3G04510.1	2.0e-68	73.41	Protein of unknown function (DUF640)	[more]
AT2G31160.1	5.6e-66	73.10	Protein of unknown function (DUF640)	[more]
AT3G23290.2	4.7e-65	74.71	Protein of unknown function (DUF640)	[more]
AT1G07090.1	3.7e-62	78.99	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 23..144 e-value: 5.6E-66 score: 220.4
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 31..158 score: 83.004524
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..180
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..180
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	PANTHER	PTHR31165:SF65	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-LIKE	coord: 18..169
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 18..169

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC02G042530.1	CmUC02G042530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus