Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAAACGGCTCATCTCGCCGTGACCTTCTCTTGAATTCTCAAAACTTCTGTCGCTCCATCCCCGCAGGGGCAGAGAACCCATCGCTGTCTCGGCTGTGCTACCGGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGTGGGCTTACTACTTAGATGCTTTCAGTAGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACTGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTTCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCACTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAGCCCCAGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTTCCCGTCGATGTGAGCTCTTGGGGAAGATCAGCCTGTTATCCCTAGAGTAACTTTTATCCGTTGAGCGACGACCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGACTTTCGTCCCTGCTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCCGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTACGCCCCATAGAAACTGTCTATCTGAGACTGTCTCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTCTAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCGGAAGGGGGCCTTCTTCGCCTTCCACCTAAGCTGCACAGGAAAGGCCCAAAGCCAATCCCAGGGAACAGTGAAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTTCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCTGACAAGGAATTTCGCTAA
mRNA sequence
ATGATAAACGGCTCATCTCGCCGTGACCTTCTCTTGAATTCTCAAAACTTCTGTCGCTCCATCCCCGCAGGGGCAGAGAACCCATCGCTGTCTCGGCTGTGCTACCGGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGTGGGCTTACTACTTAGATGCTTTCAGTAGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACTGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCCGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTACGCCCCATAGAAACTGTCTATCTGAGACTGTCTCTTGGCCCGTGCAGGTAGTTCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCTGACAAGGAATTTCGCTAA
Coding sequence (CDS)
ATGATAAACGGCTCATCTCGCCGTGACCTTCTCTTGAATTCTCAAAACTTCTGTCGCTCCATCCCCGCAGGGGCAGAGAACCCATCGCTGTCTCGGCTGTGCTACCGGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGTGGGCTTACTACTTAGATGCTTTCAGTAGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACTGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCCGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTACGCCCCATAGAAACTGTCTATCTGAGACTGTCTCTTGGCCCGTGCAGGTAGTTCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCTGACAAGGAATTTCGCTAA
Protein sequence
MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYCGHDNWYTRGASFPSSSLLPLHSRANLRLARGNLCTPPLPFGRPTPHRNCLSETVSWPVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFR
Homology
BLAST of CmUC02G035620 vs. NCBI nr
Match:
PPR91547.1 (hypothetical protein GOBAR_AA29147 [Gossypium barbadense])
HSP 1 Score: 322.4 bits (825), Expect = 2.3e-84
Identity = 158/195 (81.03%), Postives = 160/195 (82.05%), Query Frame = 0
Query: 1 MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 60
MINGSSRRDLLLNS+NFC SIPAG ENP SRLCYRRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43 MINGSSRRDLLLNSRNFCHSIPAGTENPLPSRLCYRRLWGSRNRRALILGWAYYLDAFSS 102
Query: 61 YPLRTWLPSVYCGHDNWYTRGASFP---------------------------SSSLLPLH 120
YPLRTWLPSVY GHDNWYTRGASFP SSSLLPLH
Sbjct: 103 YPLRTWLPSVYRGHDNWYTRGASFPILSPTLGTYYSPRWRRADIEVPNLPVDSSSLLPLH 162
Query: 121 SRANLRLARGNLCTPPLPFGRPTPHRNCLSETVSWPVQVVRIFTDMSISPSLSPRQCPDR 169
SRANLR ARGNLCTPPLPFGRPTPHRNCL ETV WPV+VVRIFTDMSISPSLSPRQCPDR
Sbjct: 163 SRANLRPARGNLCTPPLPFGRPTPHRNCLPETVPWPVRVVRIFTDMSISPSLSPRQCPDR 222
BLAST of CmUC02G035620 vs. NCBI nr
Match:
TXG46680.1 (hypothetical protein EZV62_027835 [Acer yangbiense] >TXG46683.1 hypothetical protein EZV62_027838 [Acer yangbiense])
HSP 1 Score: 311.6 bits (797), Expect = 4.1e-81
Identity = 150/171 (87.72%), Postives = 153/171 (89.47%), Query Frame = 0
Query: 1 MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 60
MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCY+RLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43 MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 102
Query: 61 YPLRTWLPSVYCGHDNWYTRGASFPSSSL---LPLHSRANLRLARGNLCTPPLPFGRPTP 120
YPLRTWLPSVY GHDNWYTR ++ SRANLR ARGNLCTPPLPFGRPTP
Sbjct: 103 YPLRTWLPSVYRGHDNWYTRAQPLEHTTAPGGEEPTSRANLRPARGNLCTPPLPFGRPTP 162
Query: 121 HRNCLSETVSWPVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFR 169
HRNCL ETV WPVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFR
Sbjct: 163 HRNCLPETVPWPVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFR 213
BLAST of CmUC02G035620 vs. NCBI nr
Match:
KAG4154841.1 (hypothetical protein ERO13_D03G074976v2 [Gossypium hirsutum])
HSP 1 Score: 254.2 bits (648), Expect = 7.8e-64
Identity = 122/154 (79.22%), Postives = 124/154 (80.52%), Query Frame = 0
Query: 1 MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 60
MINGSS RDLLLNSQNFC SIPAG ENP SRLCYRRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43 MINGSSHRDLLLNSQNFCHSIPAGIENPLPSRLCYRRLWGSRNRRALILGWAYYLDAFSS 102
Query: 61 YPLRTWLPSVYCGHDNWYTRGASFPSSSLLPLHSRANLRLARGNLCTPPLPFGRPTPHRN 120
YPLRTWLP+VY GHDNWYT RGNLCTPPLPFGRPTPHRN
Sbjct: 103 YPLRTWLPNVYRGHDNWYT----------------------RGNLCTPPLPFGRPTPHRN 162
Query: 121 CLSETVSWPVQVVRIFTDMSISPSLSPRQCPDRY 155
CL ETV WPV+VVRIFTDMSISPSLSPRQCPDRY
Sbjct: 163 CLPETVPWPVRVVRIFTDMSISPSLSPRQCPDRY 174
BLAST of CmUC02G035620 vs. NCBI nr
Match:
KAD7480113.1 (hypothetical protein E3N88_03249 [Mikania micrantha])
HSP 1 Score: 238.4 bits (607), Expect = 4.4e-59
Identity = 118/148 (79.73%), Postives = 119/148 (80.41%), Query Frame = 0
Query: 1 MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 60
MINGSS RDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 148 MINGSSHRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 207
Query: 61 YPLRTWLPSVYCGHDNWYTRGASFP------SSSLLPLH-----------SRANLRLARG 120
YPLRTWL SVY GHDNWYTRGASFP + PL SRANLR ARG
Sbjct: 208 YPLRTWLLSVYRGHDNWYTRGASFPLTYRFNGRTTQPLEHTTAPSGEEPTSRANLRPARG 267
Query: 121 NLCTPPLPFGRPTPHRNCLSETVSWPVQ 132
NLCTPPLPFGRPTPHRNCL ETV WP Q
Sbjct: 268 NLCTPPLPFGRPTPHRNCLPETVPWPTQ 295
BLAST of CmUC02G035620 vs. NCBI nr
Match:
CAA7037509.1 (unnamed protein product [Microthlaspi erraticum])
HSP 1 Score: 235.3 bits (599), Expect = 3.7e-58
Identity = 121/168 (72.02%), Postives = 121/168 (72.02%), Query Frame = 0
Query: 1 MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 60
MINGSSRRDLLLNSQNFC SIPAGAENP LSRLCYRRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43 MINGSSRRDLLLNSQNFCHSIPAGAENPLLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 102
Query: 61 YPLRTWLPSVYCGHDNWYTRGASFPSSSLLPLHSRANLRLARGNLCTPPLPFGRPTPHRN 120
YPLRTWLPSVY GHDNWYTRGASF
Sbjct: 103 YPLRTWLPSVYRGHDNWYTRGASF------------------------------------ 162
Query: 121 CLSETVSWPVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFR 169
PVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFR
Sbjct: 163 --------PVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFR 166
BLAST of CmUC02G035620 vs. ExPASy Swiss-Prot
Match:
Q3BAI2 (Uncharacterized protein ORF91 OS=Phalaenopsis aphrodite subsp. formosana OX=308872 PE=4 SV=1)
HSP 1 Score: 82.8 bits (203), Expect = 4.1e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 0
Query: 130 VQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFR 169
+QVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFR
Sbjct: 1 MQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFR 39
BLAST of CmUC02G035620 vs. ExPASy TrEMBL
Match:
A0A2P5WKC4 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA29147 PE=4 SV=1)
HSP 1 Score: 322.4 bits (825), Expect = 1.1e-84
Identity = 158/195 (81.03%), Postives = 160/195 (82.05%), Query Frame = 0
Query: 1 MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 60
MINGSSRRDLLLNS+NFC SIPAG ENP SRLCYRRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43 MINGSSRRDLLLNSRNFCHSIPAGTENPLPSRLCYRRLWGSRNRRALILGWAYYLDAFSS 102
Query: 61 YPLRTWLPSVYCGHDNWYTRGASFP---------------------------SSSLLPLH 120
YPLRTWLPSVY GHDNWYTRGASFP SSSLLPLH
Sbjct: 103 YPLRTWLPSVYRGHDNWYTRGASFPILSPTLGTYYSPRWRRADIEVPNLPVDSSSLLPLH 162
Query: 121 SRANLRLARGNLCTPPLPFGRPTPHRNCLSETVSWPVQVVRIFTDMSISPSLSPRQCPDR 169
SRANLR ARGNLCTPPLPFGRPTPHRNCL ETV WPV+VVRIFTDMSISPSLSPRQCPDR
Sbjct: 163 SRANLRPARGNLCTPPLPFGRPTPHRNCLPETVPWPVRVVRIFTDMSISPSLSPRQCPDR 222
BLAST of CmUC02G035620 vs. ExPASy TrEMBL
Match:
A0A2N9I7K2 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26797 PE=4 SV=1)
HSP 1 Score: 312.4 bits (799), Expect = 1.2e-81
Identity = 156/184 (84.78%), Postives = 157/184 (85.33%), Query Frame = 0
Query: 1 MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 60
MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43 MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 102
Query: 61 YPLRTWLPSVYCGHDNWYTRGASF----------------PSSSLLPLHSRANLRLARGN 120
YPLRTWLPSVY GHDN T G + SSSLLPLHSRANLRLARGN
Sbjct: 103 YPLRTWLPSVYRGHDNCPTLGTYYSPRWRRADIEVPNLPVDSSSLLPLHSRANLRLARGN 162
Query: 121 LCTPPLPFGRPTPHRNCLSETVSWPVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPD 169
LCTPPLPFGRPTPHRNCL ETV WP VVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPD
Sbjct: 163 LCTPPLPFGRPTPHRNCLPETVPWP--VVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPD 222
BLAST of CmUC02G035620 vs. ExPASy TrEMBL
Match:
A0A2N9HR91 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40356 PE=4 SV=1)
HSP 1 Score: 312.4 bits (799), Expect = 1.2e-81
Identity = 156/184 (84.78%), Postives = 157/184 (85.33%), Query Frame = 0
Query: 1 MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 60
MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43 MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 102
Query: 61 YPLRTWLPSVYCGHDNWYTRGASF----------------PSSSLLPLHSRANLRLARGN 120
YPLRTWLPSVY GHDN T G + SSSLLPLHSRANLRLARGN
Sbjct: 103 YPLRTWLPSVYRGHDNCPTLGTYYSPRWRRADIEVPNLPVDSSSLLPLHSRANLRLARGN 162
Query: 121 LCTPPLPFGRPTPHRNCLSETVSWPVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPD 169
LCTPPLPFGRPTPHRNCL ETV WP VVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPD
Sbjct: 163 LCTPPLPFGRPTPHRNCLPETVPWP--VVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPD 222
BLAST of CmUC02G035620 vs. ExPASy TrEMBL
Match:
A0A2N9I3B0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21723 PE=4 SV=1)
HSP 1 Score: 312.4 bits (799), Expect = 1.2e-81
Identity = 156/184 (84.78%), Postives = 157/184 (85.33%), Query Frame = 0
Query: 1 MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 60
MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43 MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 102
Query: 61 YPLRTWLPSVYCGHDNWYTRGASF----------------PSSSLLPLHSRANLRLARGN 120
YPLRTWLPSVY GHDN T G + SSSLLPLHSRANLRLARGN
Sbjct: 103 YPLRTWLPSVYRGHDNCPTLGTYYSPRWRRADIEVPNLPVDSSSLLPLHSRANLRLARGN 162
Query: 121 LCTPPLPFGRPTPHRNCLSETVSWPVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPD 169
LCTPPLPFGRPTPHRNCL ETV WP VVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPD
Sbjct: 163 LCTPPLPFGRPTPHRNCLPETVPWP--VVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPD 222
BLAST of CmUC02G035620 vs. ExPASy TrEMBL
Match:
A0A2N9EWN1 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7012 PE=4 SV=1)
HSP 1 Score: 312.4 bits (799), Expect = 1.2e-81
Identity = 156/184 (84.78%), Postives = 157/184 (85.33%), Query Frame = 0
Query: 1 MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 60
MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43 MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 102
Query: 61 YPLRTWLPSVYCGHDNWYTRGASF----------------PSSSLLPLHSRANLRLARGN 120
YPLRTWLPSVY GHDN T G + SSSLLPLHSRANLRLARGN
Sbjct: 103 YPLRTWLPSVYRGHDNCPTLGTYYSPRWRRADIEVPNLPVDSSSLLPLHSRANLRLARGN 162
Query: 121 LCTPPLPFGRPTPHRNCLSETVSWPVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPD 169
LCTPPLPFGRPTPHRNCL ETV WP VVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPD
Sbjct: 163 LCTPPLPFGRPTPHRNCLPETVPWP--VVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPD 222
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
PPR91547.1 | 2.3e-84 | 81.03 | hypothetical protein GOBAR_AA29147 [Gossypium barbadense] | [more] |
TXG46680.1 | 4.1e-81 | 87.72 | hypothetical protein EZV62_027835 [Acer yangbiense] >TXG46683.1 hypothetical pro... | [more] |
KAG4154841.1 | 7.8e-64 | 79.22 | hypothetical protein ERO13_D03G074976v2 [Gossypium hirsutum] | [more] |
KAD7480113.1 | 4.4e-59 | 79.73 | hypothetical protein E3N88_03249 [Mikania micrantha] | [more] |
CAA7037509.1 | 3.7e-58 | 72.02 | unnamed protein product [Microthlaspi erraticum] | [more] |
Match Name | E-value | Identity | Description | |
Q3BAI2 | 4.1e-15 | 97.44 | Uncharacterized protein ORF91 OS=Phalaenopsis aphrodite subsp. formosana OX=3088... | [more] |
Match Name | E-value | Identity | Description | |
A0A2P5WKC4 | 1.1e-84 | 81.03 | Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA29147 PE=4 SV... | [more] |
A0A2N9I7K2 | 1.2e-81 | 84.78 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26797 PE=4 SV=1 | [more] |
A0A2N9HR91 | 1.2e-81 | 84.78 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40356 PE=4 SV=1 | [more] |
A0A2N9I3B0 | 1.2e-81 | 84.78 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21723 PE=4 SV=1 | [more] |
A0A2N9EWN1 | 1.2e-81 | 84.78 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7012 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |