CmUC02G035620 (gene) Watermelon (USVL531) v1

Overview
NameCmUC02G035620
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionRibosomal_L16 domain-containing protein
LocationCmU531Chr02: 14652760 .. 14653754 (+)
RNA-Seq ExpressionCmUC02G035620
SyntenyCmUC02G035620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAAACGGCTCATCTCGCCGTGACCTTCTCTTGAATTCTCAAAACTTCTGTCGCTCCATCCCCGCAGGGGCAGAGAACCCATCGCTGTCTCGGCTGTGCTACCGGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGTGGGCTTACTACTTAGATGCTTTCAGTAGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACTGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTTCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCACTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAGCCCCAGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTTCCCGTCGATGTGAGCTCTTGGGGAAGATCAGCCTGTTATCCCTAGAGTAACTTTTATCCGTTGAGCGACGACCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGACTTTCGTCCCTGCTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCCGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTACGCCCCATAGAAACTGTCTATCTGAGACTGTCTCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTCTAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCGGAAGGGGGCCTTCTTCGCCTTCCACCTAAGCTGCACAGGAAAGGCCCAAAGCCAATCCCAGGGAACAGTGAAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTTCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCTGACAAGGAATTTCGCTAA

mRNA sequence

ATGATAAACGGCTCATCTCGCCGTGACCTTCTCTTGAATTCTCAAAACTTCTGTCGCTCCATCCCCGCAGGGGCAGAGAACCCATCGCTGTCTCGGCTGTGCTACCGGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGTGGGCTTACTACTTAGATGCTTTCAGTAGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACTGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCCGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTACGCCCCATAGAAACTGTCTATCTGAGACTGTCTCTTGGCCCGTGCAGGTAGTTCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCTGACAAGGAATTTCGCTAA

Coding sequence (CDS)

ATGATAAACGGCTCATCTCGCCGTGACCTTCTCTTGAATTCTCAAAACTTCTGTCGCTCCATCCCCGCAGGGGCAGAGAACCCATCGCTGTCTCGGCTGTGCTACCGGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGTGGGCTTACTACTTAGATGCTTTCAGTAGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACTGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCCGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTACGCCCCATAGAAACTGTCTATCTGAGACTGTCTCTTGGCCCGTGCAGGTAGTTCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCTGACAAGGAATTTCGCTAA

Protein sequence

MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYCGHDNWYTRGASFPSSSLLPLHSRANLRLARGNLCTPPLPFGRPTPHRNCLSETVSWPVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFR
Homology
BLAST of CmUC02G035620 vs. NCBI nr
Match: PPR91547.1 (hypothetical protein GOBAR_AA29147 [Gossypium barbadense])

HSP 1 Score: 322.4 bits (825), Expect = 2.3e-84
Identity = 158/195 (81.03%), Postives = 160/195 (82.05%), Query Frame = 0

Query: 1   MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 60
           MINGSSRRDLLLNS+NFC SIPAG ENP  SRLCYRRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43  MINGSSRRDLLLNSRNFCHSIPAGTENPLPSRLCYRRLWGSRNRRALILGWAYYLDAFSS 102

Query: 61  YPLRTWLPSVYCGHDNWYTRGASFP---------------------------SSSLLPLH 120
           YPLRTWLPSVY GHDNWYTRGASFP                           SSSLLPLH
Sbjct: 103 YPLRTWLPSVYRGHDNWYTRGASFPILSPTLGTYYSPRWRRADIEVPNLPVDSSSLLPLH 162

Query: 121 SRANLRLARGNLCTPPLPFGRPTPHRNCLSETVSWPVQVVRIFTDMSISPSLSPRQCPDR 169
           SRANLR ARGNLCTPPLPFGRPTPHRNCL ETV WPV+VVRIFTDMSISPSLSPRQCPDR
Sbjct: 163 SRANLRPARGNLCTPPLPFGRPTPHRNCLPETVPWPVRVVRIFTDMSISPSLSPRQCPDR 222

BLAST of CmUC02G035620 vs. NCBI nr
Match: TXG46680.1 (hypothetical protein EZV62_027835 [Acer yangbiense] >TXG46683.1 hypothetical protein EZV62_027838 [Acer yangbiense])

HSP 1 Score: 311.6 bits (797), Expect = 4.1e-81
Identity = 150/171 (87.72%), Postives = 153/171 (89.47%), Query Frame = 0

Query: 1   MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 60
           MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCY+RLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43  MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 102

Query: 61  YPLRTWLPSVYCGHDNWYTRGASFPSSSL---LPLHSRANLRLARGNLCTPPLPFGRPTP 120
           YPLRTWLPSVY GHDNWYTR      ++        SRANLR ARGNLCTPPLPFGRPTP
Sbjct: 103 YPLRTWLPSVYRGHDNWYTRAQPLEHTTAPGGEEPTSRANLRPARGNLCTPPLPFGRPTP 162

Query: 121 HRNCLSETVSWPVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFR 169
           HRNCL ETV WPVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFR
Sbjct: 163 HRNCLPETVPWPVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFR 213

BLAST of CmUC02G035620 vs. NCBI nr
Match: KAG4154841.1 (hypothetical protein ERO13_D03G074976v2 [Gossypium hirsutum])

HSP 1 Score: 254.2 bits (648), Expect = 7.8e-64
Identity = 122/154 (79.22%), Postives = 124/154 (80.52%), Query Frame = 0

Query: 1   MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 60
           MINGSS RDLLLNSQNFC SIPAG ENP  SRLCYRRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43  MINGSSHRDLLLNSQNFCHSIPAGIENPLPSRLCYRRLWGSRNRRALILGWAYYLDAFSS 102

Query: 61  YPLRTWLPSVYCGHDNWYTRGASFPSSSLLPLHSRANLRLARGNLCTPPLPFGRPTPHRN 120
           YPLRTWLP+VY GHDNWYT                      RGNLCTPPLPFGRPTPHRN
Sbjct: 103 YPLRTWLPNVYRGHDNWYT----------------------RGNLCTPPLPFGRPTPHRN 162

Query: 121 CLSETVSWPVQVVRIFTDMSISPSLSPRQCPDRY 155
           CL ETV WPV+VVRIFTDMSISPSLSPRQCPDRY
Sbjct: 163 CLPETVPWPVRVVRIFTDMSISPSLSPRQCPDRY 174

BLAST of CmUC02G035620 vs. NCBI nr
Match: KAD7480113.1 (hypothetical protein E3N88_03249 [Mikania micrantha])

HSP 1 Score: 238.4 bits (607), Expect = 4.4e-59
Identity = 118/148 (79.73%), Postives = 119/148 (80.41%), Query Frame = 0

Query: 1   MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 60
           MINGSS RDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 148 MINGSSHRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 207

Query: 61  YPLRTWLPSVYCGHDNWYTRGASFP------SSSLLPLH-----------SRANLRLARG 120
           YPLRTWL SVY GHDNWYTRGASFP        +  PL            SRANLR ARG
Sbjct: 208 YPLRTWLLSVYRGHDNWYTRGASFPLTYRFNGRTTQPLEHTTAPSGEEPTSRANLRPARG 267

Query: 121 NLCTPPLPFGRPTPHRNCLSETVSWPVQ 132
           NLCTPPLPFGRPTPHRNCL ETV WP Q
Sbjct: 268 NLCTPPLPFGRPTPHRNCLPETVPWPTQ 295

BLAST of CmUC02G035620 vs. NCBI nr
Match: CAA7037509.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 235.3 bits (599), Expect = 3.7e-58
Identity = 121/168 (72.02%), Postives = 121/168 (72.02%), Query Frame = 0

Query: 1   MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 60
           MINGSSRRDLLLNSQNFC SIPAGAENP LSRLCYRRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43  MINGSSRRDLLLNSQNFCHSIPAGAENPLLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 102

Query: 61  YPLRTWLPSVYCGHDNWYTRGASFPSSSLLPLHSRANLRLARGNLCTPPLPFGRPTPHRN 120
           YPLRTWLPSVY GHDNWYTRGASF                                    
Sbjct: 103 YPLRTWLPSVYRGHDNWYTRGASF------------------------------------ 162

Query: 121 CLSETVSWPVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFR 169
                   PVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFR
Sbjct: 163 --------PVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFR 166

BLAST of CmUC02G035620 vs. ExPASy Swiss-Prot
Match: Q3BAI2 (Uncharacterized protein ORF91 OS=Phalaenopsis aphrodite subsp. formosana OX=308872 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.1e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 0

Query: 130 VQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFR 169
           +QVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFR
Sbjct: 1   MQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFR 39

BLAST of CmUC02G035620 vs. ExPASy TrEMBL
Match: A0A2P5WKC4 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA29147 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 1.1e-84
Identity = 158/195 (81.03%), Postives = 160/195 (82.05%), Query Frame = 0

Query: 1   MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 60
           MINGSSRRDLLLNS+NFC SIPAG ENP  SRLCYRRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43  MINGSSRRDLLLNSRNFCHSIPAGTENPLPSRLCYRRLWGSRNRRALILGWAYYLDAFSS 102

Query: 61  YPLRTWLPSVYCGHDNWYTRGASFP---------------------------SSSLLPLH 120
           YPLRTWLPSVY GHDNWYTRGASFP                           SSSLLPLH
Sbjct: 103 YPLRTWLPSVYRGHDNWYTRGASFPILSPTLGTYYSPRWRRADIEVPNLPVDSSSLLPLH 162

Query: 121 SRANLRLARGNLCTPPLPFGRPTPHRNCLSETVSWPVQVVRIFTDMSISPSLSPRQCPDR 169
           SRANLR ARGNLCTPPLPFGRPTPHRNCL ETV WPV+VVRIFTDMSISPSLSPRQCPDR
Sbjct: 163 SRANLRPARGNLCTPPLPFGRPTPHRNCLPETVPWPVRVVRIFTDMSISPSLSPRQCPDR 222

BLAST of CmUC02G035620 vs. ExPASy TrEMBL
Match: A0A2N9I7K2 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26797 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.2e-81
Identity = 156/184 (84.78%), Postives = 157/184 (85.33%), Query Frame = 0

Query: 1   MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 60
           MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43  MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 102

Query: 61  YPLRTWLPSVYCGHDNWYTRGASF----------------PSSSLLPLHSRANLRLARGN 120
           YPLRTWLPSVY GHDN  T G  +                 SSSLLPLHSRANLRLARGN
Sbjct: 103 YPLRTWLPSVYRGHDNCPTLGTYYSPRWRRADIEVPNLPVDSSSLLPLHSRANLRLARGN 162

Query: 121 LCTPPLPFGRPTPHRNCLSETVSWPVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPD 169
           LCTPPLPFGRPTPHRNCL ETV WP  VVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPD
Sbjct: 163 LCTPPLPFGRPTPHRNCLPETVPWP--VVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPD 222

BLAST of CmUC02G035620 vs. ExPASy TrEMBL
Match: A0A2N9HR91 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40356 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.2e-81
Identity = 156/184 (84.78%), Postives = 157/184 (85.33%), Query Frame = 0

Query: 1   MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 60
           MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43  MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 102

Query: 61  YPLRTWLPSVYCGHDNWYTRGASF----------------PSSSLLPLHSRANLRLARGN 120
           YPLRTWLPSVY GHDN  T G  +                 SSSLLPLHSRANLRLARGN
Sbjct: 103 YPLRTWLPSVYRGHDNCPTLGTYYSPRWRRADIEVPNLPVDSSSLLPLHSRANLRLARGN 162

Query: 121 LCTPPLPFGRPTPHRNCLSETVSWPVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPD 169
           LCTPPLPFGRPTPHRNCL ETV WP  VVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPD
Sbjct: 163 LCTPPLPFGRPTPHRNCLPETVPWP--VVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPD 222

BLAST of CmUC02G035620 vs. ExPASy TrEMBL
Match: A0A2N9I3B0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21723 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.2e-81
Identity = 156/184 (84.78%), Postives = 157/184 (85.33%), Query Frame = 0

Query: 1   MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 60
           MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43  MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 102

Query: 61  YPLRTWLPSVYCGHDNWYTRGASF----------------PSSSLLPLHSRANLRLARGN 120
           YPLRTWLPSVY GHDN  T G  +                 SSSLLPLHSRANLRLARGN
Sbjct: 103 YPLRTWLPSVYRGHDNCPTLGTYYSPRWRRADIEVPNLPVDSSSLLPLHSRANLRLARGN 162

Query: 121 LCTPPLPFGRPTPHRNCLSETVSWPVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPD 169
           LCTPPLPFGRPTPHRNCL ETV WP  VVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPD
Sbjct: 163 LCTPPLPFGRPTPHRNCLPETVPWP--VVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPD 222

BLAST of CmUC02G035620 vs. ExPASy TrEMBL
Match: A0A2N9EWN1 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7012 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.2e-81
Identity = 156/184 (84.78%), Postives = 157/184 (85.33%), Query Frame = 0

Query: 1   MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 60
           MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43  MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 102

Query: 61  YPLRTWLPSVYCGHDNWYTRGASF----------------PSSSLLPLHSRANLRLARGN 120
           YPLRTWLPSVY GHDN  T G  +                 SSSLLPLHSRANLRLARGN
Sbjct: 103 YPLRTWLPSVYRGHDNCPTLGTYYSPRWRRADIEVPNLPVDSSSLLPLHSRANLRLARGN 162

Query: 121 LCTPPLPFGRPTPHRNCLSETVSWPVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPD 169
           LCTPPLPFGRPTPHRNCL ETV WP  VVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPD
Sbjct: 163 LCTPPLPFGRPTPHRNCLPETVPWP--VVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPD 222

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PPR91547.12.3e-8481.03hypothetical protein GOBAR_AA29147 [Gossypium barbadense][more]
TXG46680.14.1e-8187.72hypothetical protein EZV62_027835 [Acer yangbiense] >TXG46683.1 hypothetical pro... [more]
KAG4154841.17.8e-6479.22hypothetical protein ERO13_D03G074976v2 [Gossypium hirsutum][more]
KAD7480113.14.4e-5979.73hypothetical protein E3N88_03249 [Mikania micrantha][more]
CAA7037509.13.7e-5872.02unnamed protein product [Microthlaspi erraticum][more]
Match NameE-valueIdentityDescription
Q3BAI24.1e-1597.44Uncharacterized protein ORF91 OS=Phalaenopsis aphrodite subsp. formosana OX=3088... [more]
Match NameE-valueIdentityDescription
A0A2P5WKC41.1e-8481.03Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA29147 PE=4 SV... [more]
A0A2N9I7K21.2e-8184.78Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26797 PE=4 SV=1[more]
A0A2N9HR911.2e-8184.78Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40356 PE=4 SV=1[more]
A0A2N9I3B01.2e-8184.78Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21723 PE=4 SV=1[more]
A0A2N9EWN11.2e-8184.78Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7012 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC02G035620.1CmUC02G035620.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009507 chloroplast