Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGATCAAGAGTGATAAGGTTCTTCCAGATCCATCAAAATTGGAGCCTCTGGATAAATCCAATTACCATTGTGGTCTCATAAACTCATTATATTTTTCGAGCAACTAAAAGTCAATTACATTCTCACTGCCGACAGATTTAATAAAGGTAAGATTACTAACAAAGGTAAGTTTACTTTGGTGATTGATCCAGACAGCTCCAAAGTCACGTATCCGGATAGCTCCAAAGTTACAGATTCGTCAGAATCTGGTCAGTCCAAATTCGAACCTACTGTAGATCCAGACAAATTTGAGAAAGATAACAAGACAATATGTAACCAATTACTCAATCATATGACAGATTCGTTATTCGATTTATTCGTGGTCCAGAAGTTAGCAAAGGTGATATGGAACACTCTGAAATCTAGATATGGAAAAGATGATGCAGGCAATAAGAAGTATGTTGTTGGAAAATGGTTGCAATTTTAG
mRNA sequence
ATGTCGATCAAGAGTGATAAGGTTCTTCCAGATCCATCAAAATTGGAGCCTCTGGATAAATCCAATTACCATTGTGTCAATTACATTCTCACTGCCGACAGATTTAATAAAGGTAAGATTACTAACAAAGGTAAGTTTACTTTGGTGATTGATCCAGACAGCTCCAAAGTCACGTATCCGGATAGCTCCAAAGTTACAGATTCGTCAGAATCTGGTCAGTCCAAATTCGAACCTACTGTAGATCCAGACAAATTTGAGAAAGATAACAAGACAATATGTAACCAATTACTCAATCATATGACAGATTCGTTATTCGATTTATTCGTGGTCCAGAAGTTAGCAAAGGTGATATGGAACACTCTGAAATCTAGATATGGAAAAGATGATGCAGGCAATAAGAAGTATGTTGTTGGAAAATGGTTGCAATTTTAG
Coding sequence (CDS)
ATGTCGATCAAGAGTGATAAGGTTCTTCCAGATCCATCAAAATTGGAGCCTCTGGATAAATCCAATTACCATTGTGTCAATTACATTCTCACTGCCGACAGATTTAATAAAGGTAAGATTACTAACAAAGGTAAGTTTACTTTGGTGATTGATCCAGACAGCTCCAAAGTCACGTATCCGGATAGCTCCAAAGTTACAGATTCGTCAGAATCTGGTCAGTCCAAATTCGAACCTACTGTAGATCCAGACAAATTTGAGAAAGATAACAAGACAATATGTAACCAATTACTCAATCATATGACAGATTCGTTATTCGATTTATTCGTGGTCCAGAAGTTAGCAAAGGTGATATGGAACACTCTGAAATCTAGATATGGAAAAGATGATGCAGGCAATAAGAAGTATGTTGTTGGAAAATGGTTGCAATTTTAG
Protein sequence
MSIKSDKVLPDPSKLEPLDKSNYHCVNYILTADRFNKGKITNKGKFTLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFEKDNKTICNQLLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF
Homology
BLAST of CmUC02G033190 vs. NCBI nr
Match:
XP_038889290.1 (uncharacterized protein LOC120079196 [Benincasa hispida])
HSP 1 Score: 134.8 bits (338), Expect = 5.8e-28
Identity = 78/148 (52.70%), Postives = 91/148 (61.49%), Query Frame = 0
Query: 9 LPDPSKLEPLDKSNYHC-------------VNYILTADRFNKGKITNKGKFTLVIDPDSS 68
L D SKLEPL+ SNY V YIL + F+ GK+ + GK + ID
Sbjct: 251 LLDLSKLEPLEGSNYRLGFRIFLYFFSKLKVYYILIGNEFDGGKVIDTGKSVVEID---- 310
Query: 69 KVTYPDSSKVTDSSESGQSKFEPTVDPDKFEKDNKTICNQLLNHMTDSLFDLFVVQKLAK 128
P+SSKVTD E QS +P D KFEKDNKT+C LLNH+T SLFDLFVVQ K
Sbjct: 311 ----PNSSKVTDPLEFCQSSTKPATDSRKFEKDNKTVCGHLLNHLTSSLFDLFVVQTSVK 370
Query: 129 VIWNTLKSRYGKDDAGNKKYVVGKWLQF 144
VI +TL+SRYG DDA KKYV+ KWLQF
Sbjct: 371 VIQDTLESRYGGDDAERKKYVIEKWLQF 390
BLAST of CmUC02G033190 vs. NCBI nr
Match:
KAA0040554.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 134.8 bits (338), Expect = 5.8e-28
Identity = 79/157 (50.32%), Postives = 99/157 (63.06%), Query Frame = 0
Query: 1 MSIK-SDKVLPDPSKLEPLDKSNYHC-------------VNYILTADRFNKGKITNKGKF 60
MSIK S+K+LPD SKLEPLD +NY V+YILT D T
Sbjct: 1 MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYILTTDLPTSDPPTTTSTS 60
Query: 61 TLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFEKDNKTICNQLLNHMTDSLFD 120
+ DP+SS++ Y VT+ Q K + +DP+K+ KDNKT+ LLNHM+D +FD
Sbjct: 61 S---DPESSRIIYGAVLAVTE-----QVKKDQVIDPEKYAKDNKTVRAHLLNHMSDPMFD 120
Query: 121 LFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF 144
LF++QK AK IW+TL+SRYG DDAG KKYVVGKWLQF
Sbjct: 121 LFIIQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQF 149
BLAST of CmUC02G033190 vs. NCBI nr
Match:
TYK05597.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 134.8 bits (338), Expect = 5.8e-28
Identity = 79/157 (50.32%), Postives = 99/157 (63.06%), Query Frame = 0
Query: 1 MSIK-SDKVLPDPSKLEPLDKSNYHC-------------VNYILTADRFNKGKITNKGKF 60
MSIK S+K+LPD SKLEPLD +NY V+YILT D T
Sbjct: 1 MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYILTTDLPTSDPPTTTSTS 60
Query: 61 TLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFEKDNKTICNQLLNHMTDSLFD 120
+ DP+SS++ Y VT+ Q K + +DP+K+ KDNKT+ LLNHM+D +FD
Sbjct: 61 S---DPESSRIIYGAVLAVTE-----QVKKDQVIDPEKYAKDNKTVRAHLLNHMSDPMFD 120
Query: 121 LFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF 144
LF++QK AK IW+TL+SRYG DDAG KKYVVGKWLQF
Sbjct: 121 LFIIQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQF 149
BLAST of CmUC02G033190 vs. NCBI nr
Match:
TYK11299.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 132.1 bits (331), Expect = 3.8e-27
Identity = 78/157 (49.68%), Postives = 99/157 (63.06%), Query Frame = 0
Query: 1 MSIK-SDKVLPDPSKLEPLDKSNYHC-------------VNYILTADRFNKGKITNKGKF 60
MSIK S+K+LPD SKLEPLD++NY V+Y+LT D T
Sbjct: 1 MSIKTSNKILPDLSKLEPLDETNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
Query: 61 TLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFEKDNKTICNQLLNHMTDSLFD 120
+ DP+SS + +T + + Q K + +DP+K+ KDNKT+ LLNHM+D +FD
Sbjct: 61 S---DPESS------TGPLTAVAVTEQVKMDQVIDPEKYAKDNKTVRGHLLNHMSDPMFD 120
Query: 121 LFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF 144
LFVVQK AK IW+TL+SRYG DDAG KKYVVGKWLQF
Sbjct: 121 LFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQF 148
BLAST of CmUC02G033190 vs. NCBI nr
Match:
XP_008445782.1 (PREDICTED: uncharacterized protein LOC103488707 [Cucumis melo])
HSP 1 Score: 132.1 bits (331), Expect = 3.8e-27
Identity = 78/157 (49.68%), Postives = 99/157 (63.06%), Query Frame = 0
Query: 1 MSIK-SDKVLPDPSKLEPLDKSNYHC-------------VNYILTADRFNKGKITNKGKF 60
MSIK S+K+LPD SKLEPLD++NY V+Y+LT D T
Sbjct: 1 MSIKTSNKILPDLSKLEPLDETNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
Query: 61 TLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFEKDNKTICNQLLNHMTDSLFD 120
+ DP+SS + +T + + Q K + +DP+K+ KDNKT+ LLNHM+D +FD
Sbjct: 61 S---DPESS------TGPLTAVAVTEQVKMDQVIDPEKYAKDNKTVRGHLLNHMSDPMFD 120
Query: 121 LFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF 144
LFVVQK AK IW+TL+SRYG DDAG KKYVVGKWLQF
Sbjct: 121 LFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQF 148
BLAST of CmUC02G033190 vs. ExPASy TrEMBL
Match:
A0A5D3C1A6 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00490 PE=4 SV=1)
HSP 1 Score: 134.8 bits (338), Expect = 2.8e-28
Identity = 79/157 (50.32%), Postives = 99/157 (63.06%), Query Frame = 0
Query: 1 MSIK-SDKVLPDPSKLEPLDKSNYHC-------------VNYILTADRFNKGKITNKGKF 60
MSIK S+K+LPD SKLEPLD +NY V+YILT D T
Sbjct: 1 MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYILTTDLPTSDPPTTTSTS 60
Query: 61 TLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFEKDNKTICNQLLNHMTDSLFD 120
+ DP+SS++ Y VT+ Q K + +DP+K+ KDNKT+ LLNHM+D +FD
Sbjct: 61 S---DPESSRIIYGAVLAVTE-----QVKKDQVIDPEKYAKDNKTVRAHLLNHMSDPMFD 120
Query: 121 LFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF 144
LF++QK AK IW+TL+SRYG DDAG KKYVVGKWLQF
Sbjct: 121 LFIIQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQF 149
BLAST of CmUC02G033190 vs. ExPASy TrEMBL
Match:
A0A5A7TAR9 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold262G001180 PE=4 SV=1)
HSP 1 Score: 134.8 bits (338), Expect = 2.8e-28
Identity = 79/157 (50.32%), Postives = 99/157 (63.06%), Query Frame = 0
Query: 1 MSIK-SDKVLPDPSKLEPLDKSNYHC-------------VNYILTADRFNKGKITNKGKF 60
MSIK S+K+LPD SKLEPLD +NY V+YILT D T
Sbjct: 1 MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYILTTDLPTSDPPTTTSTS 60
Query: 61 TLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFEKDNKTICNQLLNHMTDSLFD 120
+ DP+SS++ Y VT+ Q K + +DP+K+ KDNKT+ LLNHM+D +FD
Sbjct: 61 S---DPESSRIIYGAVLAVTE-----QVKKDQVIDPEKYAKDNKTVRAHLLNHMSDPMFD 120
Query: 121 LFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF 144
LF++QK AK IW+TL+SRYG DDAG KKYVVGKWLQF
Sbjct: 121 LFIIQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQF 149
BLAST of CmUC02G033190 vs. ExPASy TrEMBL
Match:
A0A5D3CM58 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1827G00040 PE=4 SV=1)
HSP 1 Score: 132.1 bits (331), Expect = 1.8e-27
Identity = 78/157 (49.68%), Postives = 99/157 (63.06%), Query Frame = 0
Query: 1 MSIK-SDKVLPDPSKLEPLDKSNYHC-------------VNYILTADRFNKGKITNKGKF 60
MSIK S+K+LPD SKLEPLD++NY V+Y+LT D T
Sbjct: 1 MSIKTSNKILPDLSKLEPLDETNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
Query: 61 TLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFEKDNKTICNQLLNHMTDSLFD 120
+ DP+SS + +T + + Q K + +DP+K+ KDNKT+ LLNHM+D +FD
Sbjct: 61 S---DPESS------TGPLTAVAVTEQVKMDQVIDPEKYAKDNKTVRGHLLNHMSDPMFD 120
Query: 121 LFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF 144
LFVVQK AK IW+TL+SRYG DDAG KKYVVGKWLQF
Sbjct: 121 LFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQF 148
BLAST of CmUC02G033190 vs. ExPASy TrEMBL
Match:
A0A1S3BE75 (uncharacterized protein LOC103488707 OS=Cucumis melo OX=3656 GN=LOC103488707 PE=4 SV=1)
HSP 1 Score: 132.1 bits (331), Expect = 1.8e-27
Identity = 78/157 (49.68%), Postives = 99/157 (63.06%), Query Frame = 0
Query: 1 MSIK-SDKVLPDPSKLEPLDKSNYHC-------------VNYILTADRFNKGKITNKGKF 60
MSIK S+K+LPD SKLEPLD++NY V+Y+LT D T
Sbjct: 1 MSIKTSNKILPDLSKLEPLDETNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
Query: 61 TLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFEKDNKTICNQLLNHMTDSLFD 120
+ DP+SS + +T + + Q K + +DP+K+ KDNKT+ LLNHM+D +FD
Sbjct: 61 S---DPESS------TGPLTAVAVTEQVKMDQVIDPEKYAKDNKTVRGHLLNHMSDPMFD 120
Query: 121 LFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF 144
LFVVQK AK IW+TL+SRYG DDAG KKYVVGKWLQF
Sbjct: 121 LFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQF 148
BLAST of CmUC02G033190 vs. ExPASy TrEMBL
Match:
A0A5A7TMS2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G002600 PE=4 SV=1)
HSP 1 Score: 131.3 bits (329), Expect = 3.1e-27
Identity = 79/157 (50.32%), Postives = 98/157 (62.42%), Query Frame = 0
Query: 1 MSIK-SDKVLPDPSKLEPLDKSNYHC-------------VNYILTADRFNKGKITNKGKF 60
MSIK S+K+LPD SKLEPLD +NY V+Y+LT D T
Sbjct: 1 MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTPDPPTTTSTS 60
Query: 61 TLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFEKDNKTICNQLLNHMTDSLFD 120
+ DP+SS + +T + + Q K + +DP+K+ KDNKT+ LLNHM+D +FD
Sbjct: 61 S---DPESS------TGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFD 120
Query: 121 LFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF 144
LFVVQK AK IW+TLKSRYG DDAG KKYVVGKWLQF
Sbjct: 121 LFVVQKSAKDIWSTLKSRYGGDDAGRKKYVVGKWLQF 148
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038889290.1 | 5.8e-28 | 52.70 | uncharacterized protein LOC120079196 [Benincasa hispida] | [more] |
KAA0040554.1 | 5.8e-28 | 50.32 | ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | [more] |
TYK05597.1 | 5.8e-28 | 50.32 | ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | [more] |
TYK11299.1 | 3.8e-27 | 49.68 | ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | [more] |
XP_008445782.1 | 3.8e-27 | 49.68 | PREDICTED: uncharacterized protein LOC103488707 [Cucumis melo] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3C1A6 | 2.8e-28 | 50.32 | Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5A7TAR9 | 2.8e-28 | 50.32 | Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
A0A5D3CM58 | 1.8e-27 | 49.68 | Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A1S3BE75 | 1.8e-27 | 49.68 | uncharacterized protein LOC103488707 OS=Cucumis melo OX=3656 GN=LOC103488707 PE=... | [more] |
A0A5A7TMS2 | 3.1e-27 | 50.32 | Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
Match Name | E-value | Identity | Description | |