CmUC02G033190 (gene) Watermelon (USVL531) v1

Overview
NameCmUC02G033190
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionTy1-copia retrotransposon protein
LocationCmU531Chr02: 7825662 .. 7826131 (-)
RNA-Seq ExpressionCmUC02G033190
SyntenyCmUC02G033190
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGATCAAGAGTGATAAGGTTCTTCCAGATCCATCAAAATTGGAGCCTCTGGATAAATCCAATTACCATTGTGGTCTCATAAACTCATTATATTTTTCGAGCAACTAAAAGTCAATTACATTCTCACTGCCGACAGATTTAATAAAGGTAAGATTACTAACAAAGGTAAGTTTACTTTGGTGATTGATCCAGACAGCTCCAAAGTCACGTATCCGGATAGCTCCAAAGTTACAGATTCGTCAGAATCTGGTCAGTCCAAATTCGAACCTACTGTAGATCCAGACAAATTTGAGAAAGATAACAAGACAATATGTAACCAATTACTCAATCATATGACAGATTCGTTATTCGATTTATTCGTGGTCCAGAAGTTAGCAAAGGTGATATGGAACACTCTGAAATCTAGATATGGAAAAGATGATGCAGGCAATAAGAAGTATGTTGTTGGAAAATGGTTGCAATTTTAG

mRNA sequence

ATGTCGATCAAGAGTGATAAGGTTCTTCCAGATCCATCAAAATTGGAGCCTCTGGATAAATCCAATTACCATTGTGTCAATTACATTCTCACTGCCGACAGATTTAATAAAGGTAAGATTACTAACAAAGGTAAGTTTACTTTGGTGATTGATCCAGACAGCTCCAAAGTCACGTATCCGGATAGCTCCAAAGTTACAGATTCGTCAGAATCTGGTCAGTCCAAATTCGAACCTACTGTAGATCCAGACAAATTTGAGAAAGATAACAAGACAATATGTAACCAATTACTCAATCATATGACAGATTCGTTATTCGATTTATTCGTGGTCCAGAAGTTAGCAAAGGTGATATGGAACACTCTGAAATCTAGATATGGAAAAGATGATGCAGGCAATAAGAAGTATGTTGTTGGAAAATGGTTGCAATTTTAG

Coding sequence (CDS)

ATGTCGATCAAGAGTGATAAGGTTCTTCCAGATCCATCAAAATTGGAGCCTCTGGATAAATCCAATTACCATTGTGTCAATTACATTCTCACTGCCGACAGATTTAATAAAGGTAAGATTACTAACAAAGGTAAGTTTACTTTGGTGATTGATCCAGACAGCTCCAAAGTCACGTATCCGGATAGCTCCAAAGTTACAGATTCGTCAGAATCTGGTCAGTCCAAATTCGAACCTACTGTAGATCCAGACAAATTTGAGAAAGATAACAAGACAATATGTAACCAATTACTCAATCATATGACAGATTCGTTATTCGATTTATTCGTGGTCCAGAAGTTAGCAAAGGTGATATGGAACACTCTGAAATCTAGATATGGAAAAGATGATGCAGGCAATAAGAAGTATGTTGTTGGAAAATGGTTGCAATTTTAG

Protein sequence

MSIKSDKVLPDPSKLEPLDKSNYHCVNYILTADRFNKGKITNKGKFTLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFEKDNKTICNQLLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF
Homology
BLAST of CmUC02G033190 vs. NCBI nr
Match: XP_038889290.1 (uncharacterized protein LOC120079196 [Benincasa hispida])

HSP 1 Score: 134.8 bits (338), Expect = 5.8e-28
Identity = 78/148 (52.70%), Postives = 91/148 (61.49%), Query Frame = 0

Query: 9   LPDPSKLEPLDKSNYHC-------------VNYILTADRFNKGKITNKGKFTLVIDPDSS 68
           L D SKLEPL+ SNY               V YIL  + F+ GK+ + GK  + ID    
Sbjct: 251 LLDLSKLEPLEGSNYRLGFRIFLYFFSKLKVYYILIGNEFDGGKVIDTGKSVVEID---- 310

Query: 69  KVTYPDSSKVTDSSESGQSKFEPTVDPDKFEKDNKTICNQLLNHMTDSLFDLFVVQKLAK 128
               P+SSKVTD  E  QS  +P  D  KFEKDNKT+C  LLNH+T SLFDLFVVQ   K
Sbjct: 311 ----PNSSKVTDPLEFCQSSTKPATDSRKFEKDNKTVCGHLLNHLTSSLFDLFVVQTSVK 370

Query: 129 VIWNTLKSRYGKDDAGNKKYVVGKWLQF 144
           VI +TL+SRYG DDA  KKYV+ KWLQF
Sbjct: 371 VIQDTLESRYGGDDAERKKYVIEKWLQF 390

BLAST of CmUC02G033190 vs. NCBI nr
Match: KAA0040554.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 134.8 bits (338), Expect = 5.8e-28
Identity = 79/157 (50.32%), Postives = 99/157 (63.06%), Query Frame = 0

Query: 1   MSIK-SDKVLPDPSKLEPLDKSNYHC-------------VNYILTADRFNKGKITNKGKF 60
           MSIK S+K+LPD SKLEPLD +NY               V+YILT D       T     
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYILTTDLPTSDPPTTTSTS 60

Query: 61  TLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFEKDNKTICNQLLNHMTDSLFD 120
           +   DP+SS++ Y     VT+     Q K +  +DP+K+ KDNKT+   LLNHM+D +FD
Sbjct: 61  S---DPESSRIIYGAVLAVTE-----QVKKDQVIDPEKYAKDNKTVRAHLLNHMSDPMFD 120

Query: 121 LFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF 144
           LF++QK AK IW+TL+SRYG DDAG KKYVVGKWLQF
Sbjct: 121 LFIIQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQF 149

BLAST of CmUC02G033190 vs. NCBI nr
Match: TYK05597.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 134.8 bits (338), Expect = 5.8e-28
Identity = 79/157 (50.32%), Postives = 99/157 (63.06%), Query Frame = 0

Query: 1   MSIK-SDKVLPDPSKLEPLDKSNYHC-------------VNYILTADRFNKGKITNKGKF 60
           MSIK S+K+LPD SKLEPLD +NY               V+YILT D       T     
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYILTTDLPTSDPPTTTSTS 60

Query: 61  TLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFEKDNKTICNQLLNHMTDSLFD 120
           +   DP+SS++ Y     VT+     Q K +  +DP+K+ KDNKT+   LLNHM+D +FD
Sbjct: 61  S---DPESSRIIYGAVLAVTE-----QVKKDQVIDPEKYAKDNKTVRAHLLNHMSDPMFD 120

Query: 121 LFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF 144
           LF++QK AK IW+TL+SRYG DDAG KKYVVGKWLQF
Sbjct: 121 LFIIQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQF 149

BLAST of CmUC02G033190 vs. NCBI nr
Match: TYK11299.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 132.1 bits (331), Expect = 3.8e-27
Identity = 78/157 (49.68%), Postives = 99/157 (63.06%), Query Frame = 0

Query: 1   MSIK-SDKVLPDPSKLEPLDKSNYHC-------------VNYILTADRFNKGKITNKGKF 60
           MSIK S+K+LPD SKLEPLD++NY               V+Y+LT D       T     
Sbjct: 1   MSIKTSNKILPDLSKLEPLDETNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  TLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFEKDNKTICNQLLNHMTDSLFD 120
           +   DP+SS      +  +T  + + Q K +  +DP+K+ KDNKT+   LLNHM+D +FD
Sbjct: 61  S---DPESS------TGPLTAVAVTEQVKMDQVIDPEKYAKDNKTVRGHLLNHMSDPMFD 120

Query: 121 LFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF 144
           LFVVQK AK IW+TL+SRYG DDAG KKYVVGKWLQF
Sbjct: 121 LFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQF 148

BLAST of CmUC02G033190 vs. NCBI nr
Match: XP_008445782.1 (PREDICTED: uncharacterized protein LOC103488707 [Cucumis melo])

HSP 1 Score: 132.1 bits (331), Expect = 3.8e-27
Identity = 78/157 (49.68%), Postives = 99/157 (63.06%), Query Frame = 0

Query: 1   MSIK-SDKVLPDPSKLEPLDKSNYHC-------------VNYILTADRFNKGKITNKGKF 60
           MSIK S+K+LPD SKLEPLD++NY               V+Y+LT D       T     
Sbjct: 1   MSIKTSNKILPDLSKLEPLDETNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  TLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFEKDNKTICNQLLNHMTDSLFD 120
           +   DP+SS      +  +T  + + Q K +  +DP+K+ KDNKT+   LLNHM+D +FD
Sbjct: 61  S---DPESS------TGPLTAVAVTEQVKMDQVIDPEKYAKDNKTVRGHLLNHMSDPMFD 120

Query: 121 LFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF 144
           LFVVQK AK IW+TL+SRYG DDAG KKYVVGKWLQF
Sbjct: 121 LFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQF 148

BLAST of CmUC02G033190 vs. ExPASy TrEMBL
Match: A0A5D3C1A6 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00490 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.8e-28
Identity = 79/157 (50.32%), Postives = 99/157 (63.06%), Query Frame = 0

Query: 1   MSIK-SDKVLPDPSKLEPLDKSNYHC-------------VNYILTADRFNKGKITNKGKF 60
           MSIK S+K+LPD SKLEPLD +NY               V+YILT D       T     
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYILTTDLPTSDPPTTTSTS 60

Query: 61  TLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFEKDNKTICNQLLNHMTDSLFD 120
           +   DP+SS++ Y     VT+     Q K +  +DP+K+ KDNKT+   LLNHM+D +FD
Sbjct: 61  S---DPESSRIIYGAVLAVTE-----QVKKDQVIDPEKYAKDNKTVRAHLLNHMSDPMFD 120

Query: 121 LFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF 144
           LF++QK AK IW+TL+SRYG DDAG KKYVVGKWLQF
Sbjct: 121 LFIIQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQF 149

BLAST of CmUC02G033190 vs. ExPASy TrEMBL
Match: A0A5A7TAR9 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold262G001180 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.8e-28
Identity = 79/157 (50.32%), Postives = 99/157 (63.06%), Query Frame = 0

Query: 1   MSIK-SDKVLPDPSKLEPLDKSNYHC-------------VNYILTADRFNKGKITNKGKF 60
           MSIK S+K+LPD SKLEPLD +NY               V+YILT D       T     
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYILTTDLPTSDPPTTTSTS 60

Query: 61  TLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFEKDNKTICNQLLNHMTDSLFD 120
           +   DP+SS++ Y     VT+     Q K +  +DP+K+ KDNKT+   LLNHM+D +FD
Sbjct: 61  S---DPESSRIIYGAVLAVTE-----QVKKDQVIDPEKYAKDNKTVRAHLLNHMSDPMFD 120

Query: 121 LFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF 144
           LF++QK AK IW+TL+SRYG DDAG KKYVVGKWLQF
Sbjct: 121 LFIIQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQF 149

BLAST of CmUC02G033190 vs. ExPASy TrEMBL
Match: A0A5D3CM58 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1827G00040 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.8e-27
Identity = 78/157 (49.68%), Postives = 99/157 (63.06%), Query Frame = 0

Query: 1   MSIK-SDKVLPDPSKLEPLDKSNYHC-------------VNYILTADRFNKGKITNKGKF 60
           MSIK S+K+LPD SKLEPLD++NY               V+Y+LT D       T     
Sbjct: 1   MSIKTSNKILPDLSKLEPLDETNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  TLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFEKDNKTICNQLLNHMTDSLFD 120
           +   DP+SS      +  +T  + + Q K +  +DP+K+ KDNKT+   LLNHM+D +FD
Sbjct: 61  S---DPESS------TGPLTAVAVTEQVKMDQVIDPEKYAKDNKTVRGHLLNHMSDPMFD 120

Query: 121 LFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF 144
           LFVVQK AK IW+TL+SRYG DDAG KKYVVGKWLQF
Sbjct: 121 LFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQF 148

BLAST of CmUC02G033190 vs. ExPASy TrEMBL
Match: A0A1S3BE75 (uncharacterized protein LOC103488707 OS=Cucumis melo OX=3656 GN=LOC103488707 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.8e-27
Identity = 78/157 (49.68%), Postives = 99/157 (63.06%), Query Frame = 0

Query: 1   MSIK-SDKVLPDPSKLEPLDKSNYHC-------------VNYILTADRFNKGKITNKGKF 60
           MSIK S+K+LPD SKLEPLD++NY               V+Y+LT D       T     
Sbjct: 1   MSIKTSNKILPDLSKLEPLDETNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  TLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFEKDNKTICNQLLNHMTDSLFD 120
           +   DP+SS      +  +T  + + Q K +  +DP+K+ KDNKT+   LLNHM+D +FD
Sbjct: 61  S---DPESS------TGPLTAVAVTEQVKMDQVIDPEKYAKDNKTVRGHLLNHMSDPMFD 120

Query: 121 LFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF 144
           LFVVQK AK IW+TL+SRYG DDAG KKYVVGKWLQF
Sbjct: 121 LFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQF 148

BLAST of CmUC02G033190 vs. ExPASy TrEMBL
Match: A0A5A7TMS2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G002600 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 3.1e-27
Identity = 79/157 (50.32%), Postives = 98/157 (62.42%), Query Frame = 0

Query: 1   MSIK-SDKVLPDPSKLEPLDKSNYHC-------------VNYILTADRFNKGKITNKGKF 60
           MSIK S+K+LPD SKLEPLD +NY               V+Y+LT D       T     
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTPDPPTTTSTS 60

Query: 61  TLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFEKDNKTICNQLLNHMTDSLFD 120
           +   DP+SS      +  +T  + + Q K +  +DP+K+ KDNKT+   LLNHM+D +FD
Sbjct: 61  S---DPESS------TGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFD 120

Query: 121 LFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF 144
           LFVVQK AK IW+TLKSRYG DDAG KKYVVGKWLQF
Sbjct: 121 LFVVQKSAKDIWSTLKSRYGGDDAGRKKYVVGKWLQF 148

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038889290.15.8e-2852.70uncharacterized protein LOC120079196 [Benincasa hispida][more]
KAA0040554.15.8e-2850.32ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
TYK05597.15.8e-2850.32ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
TYK11299.13.8e-2749.68ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
XP_008445782.13.8e-2749.68PREDICTED: uncharacterized protein LOC103488707 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C1A62.8e-2850.32Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7TAR92.8e-2850.32Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3CM581.8e-2749.68Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A1S3BE751.8e-2749.68uncharacterized protein LOC103488707 OS=Cucumis melo OX=3656 GN=LOC103488707 PE=... [more]
A0A5A7TMS23.1e-2750.32Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..81
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..76
NoneNo IPR availablePANTHERPTHR47592:SF14GAG-POL POLYPROTEIN-LIKE PROTEINcoord: 60..143
NoneNo IPR availablePANTHERPTHR47592PBF68 PROTEINcoord: 60..143

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC02G033190.1CmUC02G033190.1mRNA