CmUC02G033170 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC02G033170
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Tubulin alpha-1B chain
Location	CmU531Chr02: 7752416 .. 7754318 (-)
RNA-Seq Expression	CmUC02G033170
Synteny	CmUC02G033170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCTATGCGAGAGAACACCTCCGCTACGCTGGTCGAGTTGGAGATCATACACACTGCCCTCTGCACCTTGGCAAGGTCACCGCCCGGAACCACCGTTGGCGGCTGGTAGTTAATGCCACACTTGAAACCAGTGGGGCACCAATCCACGAACTGGATCGTGCGCTTGGTTTTGATGGTTGCAACAGCGGCATTGACGTCCTTCGGAACAACATCTCCTCGATACATCAGACAGCAAGCCATGTACTTCCCATGGCGGGGATCGCACTTGGCCATCATGGAAGATGGCTCGAATGCGCTGTTGGTGATCTCCGCTACAGAGAGCTGTTCATGGTAGGCCTTCTCTGCAGAGATCACAGGGGCATAGGAGGAAAGCATGAAGTGGATTCTTGGGTAAGGGACTAAATTCGTTTGGAACTCAGTGACGTCTACATTCAGAGCTCCATCGAACCGTAGAGAGGCTGTCAAGGACGAAATCACCTGAACATCATTTCAAAGAAACAGTAGTCCATGATAAAATTTGTTAGATTAGTCAAGTTCATCATTTGAAAGTAAAGGTGCCAAAAATTAAAGATCAAAATGATATTTTAACCAATTTGTCACCACAACATTCAAGAAAATGAAAGGCAGTTAATATGTACCTGAGAGATGAGACGGTTGAGGTTTGTGTATGTTGGTCGCTCAATGTCAAGGGAGCGTCTACAGATGTCATAAATGGCCTCATTGTCAAGAAGCACAGAAACATCTGTATGTTCAAGGAGGGAATGGGTTGAAAGAACACTGTTGTAAGGTTCAACAACAGAGGTGGAAACTTGTGGAGAGGGATAAACAGTGAAACCAAGCTTTGATTTCTTGCCATAGTCAACAGACAAACGCTCCAAAAGGAGGGAGCCAAGACCAGATCCAGTACCCCCACCAACAGCGTTAAACACCAGGAAGCCTTGAAGTCCAGTGCAGTTGTCAGCGAGCTTTCTAATGCGATCCAAACAGAGATCAACAATCTCCTTGCCAACTGAAACACAAGTTTTTCCAATTATCATTACACAGTTCATGAAAAAACACCATGGTATACGTTCAAAATATTGATTGAATTAGCTTATACGAATGTGACAATTTGAGATGCTTACTGGTGTAATGGCCACGAGCAAAGTTGTTGGCAGCATCTTCTTTGCCGCTGATTAGCTGTTCAGGATGGAACAATTGGCGATACATTCCAGTCCTCACCTCATCAATGACAGTAGGCTCGAGATCAACAAAAACAGCACGAGGAACATGCTTGCCTGCACCTGTTTCACTGAAGAAGGTGTTGAAGGCATCATCGCCTCCAGCTACAGTTGTGTCACTCGGCATTCGACCATCAGGCTGAAATACAGATGAAAAAATTTAGACAAGATAAAAATATCCCTCAACATGTCTGATATATCCATCTATATATATATTTATATATCTATAAATCAAGGATATCTCCAACATTTTTTATAAATGCTCTTAAAACATGAAAAACCTTATCTACTTAGACTAAATATAAATAGAAATATTAATAACAATGTTCATAACTTAGTTTGGGAGAAAAAACAAAAAAAAAAAATTCATCTAACTAAAATTTATAAATTTAGCGACTTATAAGAACTATATGTTGATAATCAATATTTTATATTTTCATATTGATATAAACATTGAAATTTTATCCTTGGACAGCATGAAACTCAAATTTGGAATTCATTACAATTCTCGTGGAAAAAAGAAAAAGAATAAACATTCGCACACTTGAATTGAATTCCATACCCACATATAATCATTTCAGTTCATTTTTTAATGACGTGAAAGTTCTAAAACTAGAAACTCTAATAAGAAACAGCTAACTATTTTCACAAATATCAATCAGATCTCAGTAGAATTATGA

mRNA sequence

ATGGTCTATGCGAGAGAACACCTCCGCTACGCTGGTCGAGTTGGAGATCATACACACTGCCCTCTGCACCTTGGCAAGGTCACCGCCCGGAACCACCGTTGGCGGCTGGTAGTTAATGCCACACTTGAAACCAGTGGGGCACCAATCCACGAACTGGATCGTGCGCTTGGTTTTGATGGTTGCAACAGCGGCATTGACGTCCTTCGGAACAACATCTCCTCGATACATCAGACAGCAAGCCATGTACTTCCCATGGCGGGGATCGCACTTGGCCATCATGGAAGATGGCTCGAATGCGCTGTTGGTGATCTCCGCTACAGAGAGCTGTTCATGGTAGGCCTTCTCTGCAGAGATCACAGGGGCATAGGAGGAAAGCATGAAGTGGATTCTTGGATCTCAGTAGAATTATGA

Coding sequence (CDS)

ATGGTCTATGCGAGAGAACACCTCCGCTACGCTGGTCGAGTTGGAGATCATACACACTGCCCTCTGCACCTTGGCAAGGTCACCGCCCGGAACCACCGTTGGCGGCTGGTAGTTAATGCCACACTTGAAACCAGTGGGGCACCAATCCACGAACTGGATCGTGCGCTTGGTTTTGATGGTTGCAACAGCGGCATTGACGTCCTTCGGAACAACATCTCCTCGATACATCAGACAGCAAGCCATGTACTTCCCATGGCGGGGATCGCACTTGGCCATCATGGAAGATGGCTCGAATGCGCTGTTGGTGATCTCCGCTACAGAGAGCTGTTCATGGTAGGCCTTCTCTGCAGAGATCACAGGGGCATAGGAGGAAAGCATGAAGTGGATTCTTGGATCTCAGTAGAATTATGA

Protein sequence

MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDGCNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECAVGDLRYRELFMVGLLCRDHRGIGGKHEVDSWISVEL

Homology

[Close]

BLAST of CmUC02G033170 vs. NCBI nr
Match: OQS04464.1 (hypothetical protein THRCLA_03304 [Thraustotheca clavata])

HSP 1 Score: 148.3 bits (373), Expect = 4.9e-32
Identity = 66/132 (50.00%), Postives = 90/132 (68.18%), Query Frame = 0


Query: 1   MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDG 60
           +V  REH   +  VGDH    L   K+TA NH WR VV+ TLETS AP+H+L+  LG DG
Sbjct: 314 VVNTREHFSNSTGVGDHAASTLDTSKITAWNHGWRFVVDTTLETSRAPVHKLNGTLGLDG 373

Query: 61  CNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECAVGDLRYRELFMVGLLCRDHR 120
            NS ID+LR++I+++HQT+SHV  MA I L HH + +E A+ D  +RELFMV L   +HR
Sbjct: 374 GNSSIDILRDDITTVHQTSSHVFTMAWITLSHHRKRIEAAICDFSHRELFMVSLFSTNHR 433

Query: 121 GIGGKHEVDSWI 133
            +  +HE+D+W+
Sbjct: 434 SVRAQHEMDTWV 445

[Close]

BLAST of CmUC02G033170 vs. NCBI nr
Match: CAD2221797.1 (hypothetical protein, conserved [Angomonas deanei])

HSP 1 Score: 139.8 bits (351), Expect = 1.7e-29
Identity = 69/136 (50.74%), Postives = 91/136 (66.91%), Query Frame = 0


Query: 1   MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDG 60
           +V A EHL     VG+H H  LHLG+VTAR+H   LVV+  LE  G P+ ELD AL  DG
Sbjct: 71  VVNAGEHLSDGSGVGNHAHGTLHLGEVTARDHGGGLVVDTALEAGGGPVDELDGALRLDG 130

Query: 61  CNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECAVGDLRYRELFMVGLLCRDHR 120
            + G+DVL ++I+++H+ A HVL +A +ALG H   LE  VGDL   ELF+VGLL  D  
Sbjct: 131 GDGGVDVLGDDITAVHEAARHVLTVARVALGEHASGLEDGVGDLGDGELFVVGLLGGDDG 190

Query: 121 GIGGKHEVDSWISVEL 137
           G+GG+HEVD+ +  E+
Sbjct: 191 GVGGEHEVDTGVGHEV 206

[Close]

BLAST of CmUC02G033170 vs. NCBI nr
Match: EPY42742.1 (hypothetical protein AGDE_01181 [Angomonas deanei] >EPY42926.1 hypothetical protein AGDE_00997 [Angomonas deanei])

HSP 1 Score: 139.8 bits (351), Expect = 1.7e-29
Identity = 69/136 (50.74%), Postives = 91/136 (66.91%), Query Frame = 0


Query: 1   MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDG 60
           +V A EHL     VG+H H  LHLG+VTAR+H   LVV+  LE  G P+ ELD AL  DG
Sbjct: 71  VVNAGEHLSDGSGVGNHAHGTLHLGEVTARDHGGGLVVDTALEAGGGPVDELDGALRLDG 130

Query: 61  CNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECAVGDLRYRELFMVGLLCRDHR 120
            + G+DVL ++I+++H+ A HVL +A +ALG H   LE  VGDL   ELF+VGLL  D  
Sbjct: 131 GDGGVDVLGDDITAVHEAARHVLTVARVALGEHASGLEDGVGDLGDGELFVVGLLGGDDG 190

Query: 121 GIGGKHEVDSWISVEL 137
           G+GG+HEVD+ +  E+
Sbjct: 191 GVGGEHEVDTGVGHEV 206

[Close]

BLAST of CmUC02G033170 vs. NCBI nr
Match: EPY32002.1 (hypothetical protein STCU_03026 [Strigomonas culicis] >EPY35739.1 hypothetical protein STCU_00936 [Strigomonas culicis])

HSP 1 Score: 133.3 bits (334), Expect = 1.6e-27
Identity = 66/130 (50.77%), Postives = 88/130 (67.69%), Query Frame = 0


Query: 1   MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDG 60
           +V A EHL   GRVG+H H  LHLG+V A +    LVV+A LE  G P+ ELD ALG DG
Sbjct: 86  VVDAGEHLGDRGRVGNHAHGALHLGEVAAGHDGGGLVVDAALEAGGRPVDELDGALGLDG 145

Query: 61  CNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECAVGDLRYRELFMVGLLCRDHR 120
            + G+DVL ++I+++H+ A HVL +AG+ALG H   LE  VGDLR+ +L +V LL  D  
Sbjct: 146 RDGGVDVLGDDITAVHEAARHVLAVAGVALGQHASGLEDGVGDLRHGQLLVVRLLRGDDG 205

Query: 121 GIGGKHEVDS 131
            + G+HEVD+
Sbjct: 206 RVAGQHEVDA 215

[Close]

BLAST of CmUC02G033170 vs. NCBI nr
Match: KAF3846725.1 (hypothetical protein F7725_003803, partial [Dissostichus mawsoni])

HSP 1 Score: 133.3 bits (334), Expect = 1.6e-27
Identity = 62/130 (47.69%), Postives = 87/130 (66.92%), Query Frame = 0


Query: 1   MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDG 60
           +V A   L   G V  H H PLHLG+V++RNH   LVV+A LE SG P+H+LD ALGFDG
Sbjct: 65  VVQASPGLCDGGGVAQHAHGPLHLGQVSSRNHGRGLVVDAHLEASGTPVHKLDGALGFDG 124

Query: 61  CNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECAVGDLRYRELFMVGLLCRDHR 120
            +  +D+  ++I ++ + A HVL + G+A      WLE  VGD+ +R+L +VGLLC D+ 
Sbjct: 125 GDGRVDIFGHHIPTVQEAAGHVLAVTGVAFHQLVGWLETGVGDVSHRQLLVVGLLCGDNW 184

Query: 121 GIGGKHEVDS 131
           G+GG+ EVD+
Sbjct: 185 GVGGQREVDT 194

[Close]

BLAST of CmUC02G033170 vs. ExPASy TrEMBL
Match: A0A1W0A2F7 (Uncharacterized protein OS=Thraustotheca clavata OX=74557 GN=THRCLA_03304 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 2.4e-32
Identity = 66/132 (50.00%), Postives = 90/132 (68.18%), Query Frame = 0


Query: 1   MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDG 60
           +V  REH   +  VGDH    L   K+TA NH WR VV+ TLETS AP+H+L+  LG DG
Sbjct: 314 VVNTREHFSNSTGVGDHAASTLDTSKITAWNHGWRFVVDTTLETSRAPVHKLNGTLGLDG 373

Query: 61  CNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECAVGDLRYRELFMVGLLCRDHR 120
            NS ID+LR++I+++HQT+SHV  MA I L HH + +E A+ D  +RELFMV L   +HR
Sbjct: 374 GNSSIDILRDDITTVHQTSSHVFTMAWITLSHHRKRIEAAICDFSHRELFMVSLFSTNHR 433

Query: 121 GIGGKHEVDSWI 133
            +  +HE+D+W+
Sbjct: 434 SVRAQHEMDTWV 445

[Close]

BLAST of CmUC02G033170 vs. ExPASy TrEMBL
Match: K3X1R8 (Uncharacterized protein OS=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) OX=431595 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.7e-30
Identity = 66/132 (50.00%), Postives = 87/132 (65.91%), Query Frame = 0


Query: 1   MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDG 60
           +V AREH     RV DH H  LH  K+TA  + WRLVV+  LET  AP+HELDRALG D 
Sbjct: 60  VVDAREHFSDGRRVRDHAHGTLHASKITAWYNSWRLVVDTALETRWAPVHELDRALGLDR 119

Query: 61  CNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECAVGDLRYRELFMVGLLCRDHR 120
            N  I +L ++I+++H+T  HVL +A + LGHH  W + AVGD   R+L +V LL RDH 
Sbjct: 120 GNRSIHILWHDITTVHETRGHVLAVAWVTLGHHRGWFKDAVGDFSDRQLLVVRLLSRDHW 179

Query: 121 GIGGKHEVDSWI 133
            +  +HEVD+W+
Sbjct: 180 RVRAQHEVDTWV 191

[Close]

BLAST of CmUC02G033170 vs. ExPASy TrEMBL
Match: A0A4W2I559 (Tubulin alpha-1B chain OS=Bos indicus x Bos taurus OX=30522 GN=TUBA1A PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 3.8e-30
Identity = 67/132 (50.76%), Postives = 87/132 (65.91%), Query Frame = 0


Query: 1   MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDG 60
           +V AR  L  +  V  H H  L+ G+V+AR H  RLVVNA LE SGAP+H+LD  LG DG
Sbjct: 59  VVQARPGLSNSCGVAQHAHSSLYFGQVSARYHSGRLVVNANLEASGAPVHKLDGTLGLDG 118

Query: 61  CNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECAVGDLRYRELFMVGLLCRDHR 120
            N  ID+  N+I+++ Q A HV PMA +   H   WL+ ++GDL YR+LFMVG L RD R
Sbjct: 119 GNGSIDIFGNHITTVQQAAGHVFPMARVTFHHLVGWLKASIGDLCYRKLFMVGFLSRDDR 178

Query: 121 GIGGKHEVDSWI 133
           G+ G+ EVD+ I
Sbjct: 179 GVCGQREVDAGI 190

[Close]

BLAST of CmUC02G033170 vs. ExPASy TrEMBL
Match: A0A7G2CRM3 (Uncharacterized protein OS=Angomonas deanei OX=59799 GN=ADEAN_000933200 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 8.4e-30
Identity = 69/136 (50.74%), Postives = 91/136 (66.91%), Query Frame = 0


Query: 1   MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDG 60
           +V A EHL     VG+H H  LHLG+VTAR+H   LVV+  LE  G P+ ELD AL  DG
Sbjct: 71  VVNAGEHLSDGSGVGNHAHGTLHLGEVTARDHGGGLVVDTALEAGGGPVDELDGALRLDG 130

Query: 61  CNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECAVGDLRYRELFMVGLLCRDHR 120
            + G+DVL ++I+++H+ A HVL +A +ALG H   LE  VGDL   ELF+VGLL  D  
Sbjct: 131 GDGGVDVLGDDITAVHEAARHVLTVARVALGEHASGLEDGVGDLGDGELFVVGLLGGDDG 190

Query: 121 GIGGKHEVDSWISVEL 137
           G+GG+HEVD+ +  E+
Sbjct: 191 GVGGEHEVDTGVGHEV 206

[Close]

BLAST of CmUC02G033170 vs. ExPASy TrEMBL
Match: J3LSE0 (Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.4e-29
Identity = 70/122 (57.38%), Postives = 86/122 (70.49%), Query Frame = 0


Query: 1   MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDG 60
           +V A E L  AG VGDH H PLHLG+V A +   RLVV+A LE   AP+ ELD ALG DG
Sbjct: 85  VVNAGEDLDDAGGVGDHAHGPLHLGQVAAGDDAGRLVVDAALEPGRAPVDELDGALGLDG 144

Query: 61  CNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECAVGDLRYRELFMVGLLCRDHR 120
            +SG+ VL ++I+++H+ A HVL +A +ALGHHG WLE AVGD    EL MVGLL RDH 
Sbjct: 145 GDSGVHVLGDHITTVHEAACHVLAVARVALGHHGGWLEGAVGDFSDGELLMVGLLGRDHW 204

Query: 121 GI 123
           G+
Sbjct: 205 GV 206

The following BLAST results are available for this feature:

BLAST of CmUC02G033170 vs. NCBI nr


Match Name	E-value	Identity	Description
OQS04464.1	4.9e-32	50.00	hypothetical protein THRCLA_03304 [Thraustotheca clavata]	[more]
CAD2221797.1	1.7e-29	50.74	hypothetical protein, conserved [Angomonas deanei]	[more]
EPY42742.1	1.7e-29	50.74	hypothetical protein AGDE_01181 [Angomonas deanei] >EPY42926.1 hypothetical prot...	[more]
EPY32002.1	1.6e-27	50.77	hypothetical protein STCU_03026 [Strigomonas culicis] >EPY35739.1 hypothetical p...	[more]
KAF3846725.1	1.6e-27	47.69	hypothetical protein F7725_003803, partial [Dissostichus mawsoni]	[more]

BLAST of CmUC02G033170 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC02G033170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1W0A2F7	2.4e-32	50.00	Uncharacterized protein OS=Thraustotheca clavata OX=74557 GN=THRCLA_03304 PE=4 S...	[more]
K3X1R8	1.7e-30	50.00	Uncharacterized protein OS=Globisporangium ultimum (strain ATCC 200006 / CBS 805...	[more]
A0A4W2I559	3.8e-30	50.76	Tubulin alpha-1B chain OS=Bos indicus x Bos taurus OX=30522 GN=TUBA1A PE=3 SV=1	[more]
A0A7G2CRM3	8.4e-30	50.74	Uncharacterized protein OS=Angomonas deanei OX=59799 GN=ADEAN_000933200 PE=4 SV=...	[more]
J3LSE0	1.4e-29	57.38	Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1	[more]

BLAST of CmUC02G033170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36527	OS01G0282866 PROTEIN	coord: 1..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC02G033170.1	CmUC02G033170.1	mRNA