CmUC02G030050 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC02G030050
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	SKP1-like protein
Location	CmU531Chr02: 3870232 .. 3871477 (-)
RNA-Seq Expression	CmUC02G030050
Synteny	CmUC02G030050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTCGTCGAAGAAGATCGTTCTCAGGAGTTCCGACGGCGGAACCTTCGACGTCGACGAAATTGTCGCCGTCGAGTCTCAAACCATCAAGCACATGATCGAGGACGATTGCGCCGACACTGTTATCCCGTTGCCCAATGTCACCAGTGGCATTCTTTCCAAGGTAATTGAGTACTGTAAGAAGCATGTCGAGACCGATGATAAAGATCCTCAAGCCGTTTATGAAACTCTCAAAACCTGGGACGCTGAATTTGTCAAGGTTGATCAGAATACCCTCTTTGATCTCATCTTGGTGAGTTTCTTTTTTCCTACCTCTCTATTTTTGTGCCGTTATCTAGGAATTAATGGAATTTCTTTGTAAACTTAATTGTTTTTTGTTGCTCTGTTTTCTTCCGTTGATAATTTGGGGATGGATTATTTAGGAGTTTTTTCATGCATTTTCCTTTTCTCTTTCTACAAATTGGCTATCTATCACGATGCTTGATTGCTTTCTTTTGCTGCTACAATGTTTAGATTGATCGTTAGAATATGATCTTACTTTCTGGTTACAAAGAACCGTGGAATTGAAGTTTGCTTTGAATTATTGAACTACGTAGTTGATCATGGGTTCTTTGGTATGGGATGTTTGACTGTTTATTCTTACATGATTTTGGCTAAACTCCAAAGGGTCACTTTTCTTTTGCTGTCTTTATTGGATCAATCAACAATCATCAATTTACTGTCCTTTAAAAATTTCAAGATTATTATTAGGGTGAAAACTGGTTTAAGCCCATTAAACTCTTCCCCTCAAAGAGCAAATGATGCAGGAGGGTCATATCAATTTGGTTTTTTAATGTCCTCCCCAAGTGCTTAGTCTGAGGTTTTTATTTATTGTTTTAAGTGGCTTGAAGCTTCTCATCTAAGAGGGCTCTTTTCCTTGGGACCTCTCCCCTGGGTTTGGTTTTTATCTTTGTTTGTGGTGATTTATTCTGTAACATAACTCATATTTGTTGCATAAATTATCTATACTTGGGCCTTTTCATTGCTGGCTATGGACCATAATGGGTTTGTTTTTGGTGCCCCAAATTCAGGCTGCTAACTATCTGAACATCAAAAGCCTTTTGGATCTCACATGCCAGACTGTGGCTGACATGATCAAAGGAAAGACTCCAGAGGAAATTCGAAAGACGTTCAACATCAAGAATGATTTTACTCCAGAGGAGGAAGAGGAGGTTCGAAGGGAGAATCAATGGGCCTTCGAGTAA

mRNA sequence

ATGTCGTCGTCGAAGAAGATCGTTCTCAGGAGTTCCGACGGCGGAACCTTCGACGTCGACGAAATTGTCGCCGTCGAGTCTCAAACCATCAAGCACATGATCGAGGACGATTGCGCCGACACTGTTATCCCGTTGCCCAATGTCACCAGTGGCATTCTTTCCAAGGTAATTGAGTACTGTAAGAAGCATGTCGAGACCGATGATAAAGATCCTCAAGCCGTTTATGAAACTCTCAAAACCTGGGACGCTGAATTTGTCAAGGTTGATCAGAATACCCTCTTTGATCTCATCTTGGCTGCTAACTATCTGAACATCAAAAGCCTTTTGGATCTCACATGCCAGACTGTGGCTGACATGATCAAAGGAAAGACTCCAGAGGAAATTCGAAAGACGTTCAACATCAAGAATGATTTTACTCCAGAGGAGGAAGAGGAGGTTCGAAGGGAGAATCAATGGGCCTTCGAGTAA

Coding sequence (CDS)

ATGTCGTCGTCGAAGAAGATCGTTCTCAGGAGTTCCGACGGCGGAACCTTCGACGTCGACGAAATTGTCGCCGTCGAGTCTCAAACCATCAAGCACATGATCGAGGACGATTGCGCCGACACTGTTATCCCGTTGCCCAATGTCACCAGTGGCATTCTTTCCAAGGTAATTGAGTACTGTAAGAAGCATGTCGAGACCGATGATAAAGATCCTCAAGCCGTTTATGAAACTCTCAAAACCTGGGACGCTGAATTTGTCAAGGTTGATCAGAATACCCTCTTTGATCTCATCTTGGCTGCTAACTATCTGAACATCAAAAGCCTTTTGGATCTCACATGCCAGACTGTGGCTGACATGATCAAAGGAAAGACTCCAGAGGAAATTCGAAAGACGTTCAACATCAAGAATGATTTTACTCCAGAGGAGGAAGAGGAGGTTCGAAGGGAGAATCAATGGGCCTTCGAGTAA

Protein sequence

MSSSKKIVLRSSDGGTFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYCKKHVETDDKDPQAVYETLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE

Homology

[Close]

BLAST of CmUC02G030050 vs. NCBI nr
Match: XP_004144851.1 (SKP1-like protein 1B [Cucumis sativus])

HSP 1 Score: 288.1 bits (736), Expect = 4.5e-74
Identity = 146/155 (94.19%), Postives = 149/155 (96.13%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGGTFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYC 60
           MSSSKKIVLRSSDG TFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTS ILSKVIEYC
Sbjct: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSAILSKVIEYC 60

Query: 61  KKHVETDDKDPQAVYETLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           K HVETDDKD + + +TLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI
Sbjct: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CmUC02G030050 vs. NCBI nr
Match: XP_008447950.1 (PREDICTED: SKP1-like protein 1B [Cucumis melo] >KAA0049758.1 SKP1-like protein 1B [Cucumis melo var. makuwa] >TYK12120.1 SKP1-like protein 1B [Cucumis melo var. makuwa])

HSP 1 Score: 286.2 bits (731), Expect = 1.7e-73
Identity = 144/155 (92.90%), Postives = 148/155 (95.48%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGGTFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYC 60
           MSSSKKIVLRSSDG TFDVDEIVAVESQTIKHMIEDDC DTVIPLPNVTS ILSKV+EYC
Sbjct: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYC 60

Query: 61  KKHVETDDKDPQAVYETLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           K HVETDDKD + + +TLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI
Sbjct: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CmUC02G030050 vs. NCBI nr
Match: XP_022135870.1 (SKP1-like protein 1B [Momordica charantia])

HSP 1 Score: 276.9 bits (707), Expect = 1.0e-70
Identity = 139/155 (89.68%), Postives = 147/155 (94.84%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGGTFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYC 60
           MSSSKKIVL+SSDG TF+V+E VAVESQTIKHMIEDDCAD VIPLPNV S IL+KVIEYC
Sbjct: 1   MSSSKKIVLKSSDGETFEVEEAVAVESQTIKHMIEDDCADNVIPLPNVNSAILAKVIEYC 60

Query: 61  KKHVETDDKDPQAVYETLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           KKHVETDDKD +AV ++LKTWDAE+VKVDQNTLFDLILAANYLNIK LLDLTCQTVADMI
Sbjct: 61  KKHVETDDKDSKAVDDSLKTWDAEYVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CmUC02G030050 vs. NCBI nr
Match: KAG6589016.1 (SKP1-like protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 266.5 bits (680), Expect = 1.4e-67
Identity = 135/155 (87.10%), Postives = 142/155 (91.61%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGGTFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYC 60
           MSSSK IVLRSSDG  F +DE VA+ESQTIKHMIEDDCADTVIP+PNVT  IL+KVIEYC
Sbjct: 1   MSSSKVIVLRSSDGEIFHIDEAVALESQTIKHMIEDDCADTVIPVPNVTGSILAKVIEYC 60

Query: 61  KKHVETDDKDPQAVYETLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           KKHVETD KD  A+ +TLK WDAEFVKVDQN LFDLILAANYL+IKSLLDLTCQTVADMI
Sbjct: 61  KKHVETDAKDSNALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CmUC02G030050 vs. NCBI nr
Match: KAG7015279.1 (SKP1-like protein 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 266.5 bits (680), Expect = 1.4e-67
Identity = 135/155 (87.10%), Postives = 143/155 (92.26%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGGTFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYC 60
           MSSSK IVLRSSDG  F +DE VA+ESQTIKHMIEDDCADTVIP+PNVT  IL+KVIEYC
Sbjct: 1   MSSSKMIVLRSSDGEIFHMDEAVALESQTIKHMIEDDCADTVIPVPNVTGSILAKVIEYC 60

Query: 61  KKHVETDDKDPQAVYETLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           KKHVETD KD +A+ +TLK WDAEFVKVDQN LFDLILAANYL+IKSLLDLTCQTVADMI
Sbjct: 61  KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CmUC02G030050 vs. ExPASy Swiss-Prot
Match: Q9FHW7 (SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.4e-62
Identity = 125/171 (73.10%), Postives = 135/171 (78.95%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGGTFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYC 60
           MS+ +KI L+SSDG  F++DE VA+ESQTIKHMIEDDC D  IPLPNVTS ILSKVIEYC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVETDDKDPQAV----------------YETLKTWDAEFVKVDQNTLFDLILAANYLN 120
           K+HVE  +K                      E LKTWD+EF+KVDQ TLFDLILAANYLN
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query: 121 IKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           IK LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of CmUC02G030050 vs. ExPASy Swiss-Prot
Match: Q39255 (SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 2.2e-60
Identity = 118/159 (74.21%), Postives = 135/159 (84.91%), Query Frame = 0


Query: 3   SSKKIVLRSSDGGTFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYCKK 62
           S+KKIVL+SSDG +F+V+E VA+ESQTI HM+EDDC D  +PLPNVTS IL+KVIEYCK+
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVETDDKDPQAVY------ETLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTV 122
           HVE      +AV       + LK WDA+F+K+DQ TLF+LILAANYLNIK+LLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 123 ADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           ADMIKGKTPEEIR TFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of CmUC02G030050 vs. ExPASy Swiss-Prot
Match: Q6PL11 (SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 9.4e-59
Identity = 122/166 (73.49%), Postives = 129/166 (77.71%), Query Frame = 0


Query: 5   KKIVLRSSDGGTFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYCKKHV 64
           K I L+SSDG  F+V+E VA+ESQTI+HMIEDDCAD  IPLPNV S ILSKVIEYC KHV
Sbjct: 8   KMITLKSSDGEEFEVEEAVAMESQTIRHMIEDDCADNGIPLPNVNSKILSKVIEYCNKHV 67

Query: 65  E---------TDDKD------PQAVYETLKTWDAEFVKVDQNTLFDLILAANYLNIKSLL 124
                      DD        P    E LK WDA+FVKVDQ TLFDLILAANYLNIK LL
Sbjct: 68  HAAAAAASKAADDAASAAAAVPPPSGEDLKNWDADFVKVDQATLFDLILAANYLNIKGLL 127

Query: 125 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEE+RRENQWAFE
Sbjct: 128 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEIRRENQWAFE 173

[Close]

BLAST of CmUC02G030050 vs. ExPASy Swiss-Prot
Match: Q651E8 (SKP1-like protein 20 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP20 PE=1 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 6.1e-58
Identity = 122/165 (73.94%), Postives = 132/165 (80.00%), Query Frame = 0


Query: 7   IVLRSSDGGTFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYCKKHVE- 66
           I LRS +G  F+V E VA+ESQTI+HMIED CADT IPLPNV++ ILSKVIEYC KHVE 
Sbjct: 11  ITLRSCEGQVFEVAEAVAMESQTIRHMIEDKCADTGIPLPNVSAKILSKVIEYCSKHVEA 70

Query: 67  -------TDDKDP--------QAVYETLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLD 126
                   D   P        +AV + LKT+DAEFVKVDQ+TLFDLILAANYLNIK LLD
Sbjct: 71  RGGAAAAADGDAPAPAAVEANKAVEDELKTFDAEFVKVDQSTLFDLILAANYLNIKGLLD 130

Query: 127 LTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           LTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 131 LTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 175

[Close]

BLAST of CmUC02G030050 vs. ExPASy Swiss-Prot
Match: Q9LNT9 (SKP1-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=ASK4 PE=1 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.8e-54
Identity = 110/160 (68.75%), Postives = 128/160 (80.00%), Query Frame = 0


Query: 3   SSKKIVLRSSDGGTFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYCKK 62
           + K I+L+SSDG +F+++E VAV+SQTIKHMIEDDCAD  IPLPNVT  IL+KVIEYCKK
Sbjct: 4   TKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKK 63

Query: 63  HVET-----DDKD--PQAVYETLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQT 122
           HVE       DKD    A  + LK WD+EFVKVDQ TLFDLILAANYLNI  LLDLTC+ 
Sbjct: 64  HVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKA 123

Query: 123 VADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           VAD ++GKTPE++R  FNIKND+TPEEE EVR EN+WAFE
Sbjct: 124 VADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

[Close]

BLAST of CmUC02G030050 vs. ExPASy TrEMBL
Match: A0A0A0K4P4 (SKP1-like protein OS=Cucumis sativus OX=3659 GN=Csa_7G012950 PE=3 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.2e-74
Identity = 146/155 (94.19%), Postives = 149/155 (96.13%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGGTFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYC 60
           MSSSKKIVLRSSDG TFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTS ILSKVIEYC
Sbjct: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSAILSKVIEYC 60

Query: 61  KKHVETDDKDPQAVYETLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           K HVETDDKD + + +TLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI
Sbjct: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CmUC02G030050 vs. ExPASy TrEMBL
Match: A0A5A7U3D8 (SKP1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00540 PE=3 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 8.2e-74
Identity = 144/155 (92.90%), Postives = 148/155 (95.48%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGGTFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYC 60
           MSSSKKIVLRSSDG TFDVDEIVAVESQTIKHMIEDDC DTVIPLPNVTS ILSKV+EYC
Sbjct: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYC 60

Query: 61  KKHVETDDKDPQAVYETLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           K HVETDDKD + + +TLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI
Sbjct: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CmUC02G030050 vs. ExPASy TrEMBL
Match: A0A1S3BI15 (SKP1-like protein OS=Cucumis melo OX=3656 GN=LOC103490282 PE=3 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 8.2e-74
Identity = 144/155 (92.90%), Postives = 148/155 (95.48%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGGTFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYC 60
           MSSSKKIVLRSSDG TFDVDEIVAVESQTIKHMIEDDC DTVIPLPNVTS ILSKV+EYC
Sbjct: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYC 60

Query: 61  KKHVETDDKDPQAVYETLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           K HVETDDKD + + +TLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI
Sbjct: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CmUC02G030050 vs. ExPASy TrEMBL
Match: A0A6J1C297 (SKP1-like protein OS=Momordica charantia OX=3673 GN=LOC111007712 PE=3 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 5.0e-71
Identity = 139/155 (89.68%), Postives = 147/155 (94.84%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGGTFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYC 60
           MSSSKKIVL+SSDG TF+V+E VAVESQTIKHMIEDDCAD VIPLPNV S IL+KVIEYC
Sbjct: 1   MSSSKKIVLKSSDGETFEVEEAVAVESQTIKHMIEDDCADNVIPLPNVNSAILAKVIEYC 60

Query: 61  KKHVETDDKDPQAVYETLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           KKHVETDDKD +AV ++LKTWDAE+VKVDQNTLFDLILAANYLNIK LLDLTCQTVADMI
Sbjct: 61  KKHVETDDKDSKAVDDSLKTWDAEYVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CmUC02G030050 vs. ExPASy TrEMBL
Match: A0A6J1EKE0 (SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111435156 PE=3 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.2e-67
Identity = 134/155 (86.45%), Postives = 144/155 (92.90%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGGTFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYC 60
           MSSSK IVLRSSDG TF +DE VA+ESQTIK+MIEDDCADTVIP+PNVT  IL++VIEYC
Sbjct: 1   MSSSKVIVLRSSDGETFHIDEAVALESQTIKYMIEDDCADTVIPVPNVTGSILARVIEYC 60

Query: 61  KKHVETDDKDPQAVYETLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           KKHVETD KD +A+ +TLK WDAEFVKVDQN LFDLILAANYL+IKSLLDLTCQTVADMI
Sbjct: 61  KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CmUC02G030050 vs. TAIR 10
Match: AT5G42190.1 (E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein )

HSP 1 Score: 240.4 bits (612), Expect = 1.0e-63
Identity = 125/171 (73.10%), Postives = 135/171 (78.95%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGGTFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYC 60
           MS+ +KI L+SSDG  F++DE VA+ESQTIKHMIEDDC D  IPLPNVTS ILSKVIEYC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVETDDKDPQAV----------------YETLKTWDAEFVKVDQNTLFDLILAANYLN 120
           K+HVE  +K                      E LKTWD+EF+KVDQ TLFDLILAANYLN
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query: 121 IKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           IK LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of CmUC02G030050 vs. TAIR 10
Match: AT1G75950.1 (S phase kinase-associated protein 1 )

HSP 1 Score: 233.0 bits (593), Expect = 1.6e-61
Identity = 118/159 (74.21%), Postives = 135/159 (84.91%), Query Frame = 0


Query: 3   SSKKIVLRSSDGGTFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYCKK 62
           S+KKIVL+SSDG +F+V+E VA+ESQTI HM+EDDC D  +PLPNVTS IL+KVIEYCK+
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVETDDKDPQAVY------ETLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTV 122
           HVE      +AV       + LK WDA+F+K+DQ TLF+LILAANYLNIK+LLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 123 ADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           ADMIKGKTPEEIR TFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of CmUC02G030050 vs. TAIR 10
Match: AT1G20140.1 (SKP1-like 4 )

HSP 1 Score: 213.4 bits (542), Expect = 1.3e-55
Identity = 110/160 (68.75%), Postives = 128/160 (80.00%), Query Frame = 0


Query: 3   SSKKIVLRSSDGGTFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYCKK 62
           + K I+L+SSDG +F+++E VAV+SQTIKHMIEDDCAD  IPLPNVT  IL+KVIEYCKK
Sbjct: 4   TKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKK 63

Query: 63  HVET-----DDKD--PQAVYETLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQT 122
           HVE       DKD    A  + LK WD+EFVKVDQ TLFDLILAANYLNI  LLDLTC+ 
Sbjct: 64  HVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKA 123

Query: 123 VADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           VAD ++GKTPE++R  FNIKND+TPEEE EVR EN+WAFE
Sbjct: 124 VADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

[Close]

BLAST of CmUC02G030050 vs. TAIR 10
Match: AT4G34210.1 (SKP1-like 11 )

HSP 1 Score: 208.4 bits (529), Expect = 4.2e-54
Identity = 108/153 (70.59%), Postives = 126/153 (82.35%), Query Frame = 0


Query: 3   SSKKIVLRSSDGGTFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYCKK 62
           SSK IVL SSDG +F+V+E VA++SQTI HM+EDDC    IPL NV S IL KVIEYCKK
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  HVETDDKDPQAVYETLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMIKG 122
           H   D+ +P +  E L  WD +F+ ++Q+T+F+LILAANYLNIKSLLDLTCQTVADMIKG
Sbjct: 62  H-HVDEANPIS-EEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKG 121

Query: 123 KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KTPEEIR TFNI+NDFTPEEEE VR+ENQWAFE
Sbjct: 122 KTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of CmUC02G030050 vs. TAIR 10
Match: AT2G25700.1 (SKP1-like 3 )

HSP 1 Score: 206.5 bits (524), Expect = 1.6e-53
Identity = 107/160 (66.88%), Postives = 124/160 (77.50%), Query Frame = 0


Query: 3   SSKKIVLRSSDGGTFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYCKK 62
           + K I+L+SSDG +F+V+E VAVESQTIKHMIEDDC D  IPLPNVT  IL+KVIEYCKK
Sbjct: 4   TKKMIILKSSDGESFEVEEAVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCKK 63

Query: 63  HVET-----DDKDPQAVYET--LKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQT 122
           HVE       DKD     E   LKTWD +FVKVD  TLFDL+ AANYLNI  LLDLTC+ 
Sbjct: 64  HVEAAAEAGGDKDFYGSTENHELKTWDNDFVKVDHPTLFDLLRAANYLNISGLLDLTCKA 123

Query: 123 VADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           VAD ++GKTP ++R+ FNIKND+TPEEE EVR EN+WAFE
Sbjct: 124 VADQMRGKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163

The following BLAST results are available for this feature:

BLAST of CmUC02G030050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144851.1	4.5e-74	94.19	SKP1-like protein 1B [Cucumis sativus]	[more]
XP_008447950.1	1.7e-73	92.90	PREDICTED: SKP1-like protein 1B [Cucumis melo] >KAA0049758.1 SKP1-like protein 1...	[more]
XP_022135870.1	1.0e-70	89.68	SKP1-like protein 1B [Momordica charantia]	[more]
KAG6589016.1	1.4e-67	87.10	SKP1-like protein 4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7015279.1	1.4e-67	87.10	SKP1-like protein 4 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of CmUC02G030050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FHW7	1.4e-62	73.10	SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1	[more]
Q39255	2.2e-60	74.21	SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1	[more]
Q6PL11	9.4e-59	73.49	SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1	[more]
Q651E8	6.1e-58	73.94	SKP1-like protein 20 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP20 PE=1 SV=1	[more]
Q9LNT9	1.8e-54	68.75	SKP1-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=ASK4 PE=1 SV=1	[more]

BLAST of CmUC02G030050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4P4	2.2e-74	94.19	SKP1-like protein OS=Cucumis sativus OX=3659 GN=Csa_7G012950 PE=3 SV=1	[more]
A0A5A7U3D8	8.2e-74	92.90	SKP1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00...	[more]
A0A1S3BI15	8.2e-74	92.90	SKP1-like protein OS=Cucumis melo OX=3656 GN=LOC103490282 PE=3 SV=1	[more]
A0A6J1C297	5.0e-71	89.68	SKP1-like protein OS=Momordica charantia OX=3673 GN=LOC111007712 PE=3 SV=1	[more]
A0A6J1EKE0	1.2e-67	86.45	SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111435156 PE=3 SV=1	[more]

BLAST of CmUC02G030050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42190.1	1.0e-63	73.10	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein	[more]
AT1G75950.1	1.6e-61	74.21	S phase kinase-associated protein 1	[more]
AT1G20140.1	1.3e-55	68.75	SKP1-like 4	[more]
AT4G34210.1	4.2e-54	70.59	SKP1-like 11	[more]
AT2G25700.1	1.6e-53	66.88	SKP1-like 3	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001232	S-phase kinase-associated protein 1-like	SMART	SM00512	skp1_3	coord: 4..105 e-value: 1.3E-49 score: 180.8
IPR016073	SKP1 component, POZ domain	PFAM	PF03931	Skp1_POZ	coord: 5..64 e-value: 2.1E-27 score: 95.1
IPR016897	S-phase kinase-associated protein 1	PIRSF	PIRSF028729	SCF_Skp	coord: 1..155 e-value: 2.8E-66 score: 220.3
IPR016897	S-phase kinase-associated protein 1	PANTHER	PTHR11165	SKP1	coord: 1..155
IPR016072	SKP1 component, dimerisation	PFAM	PF01466	Skp1	coord: 106..153 e-value: 1.9E-30 score: 104.6
IPR011333	SKP1/BTB/POZ domain superfamily	GENE3D	3.30.710.10	Potassium Channel Kv1.1; Chain A	coord: 1..155 e-value: 9.9E-73 score: 245.6
IPR011333	SKP1/BTB/POZ domain superfamily	SUPERFAMILY	54695	POZ domain	coord: 6..67
None	No IPR available	PANTHER	PTHR11165:SF145	PUTATIVE-RELATED	coord: 1..155
None	No IPR available	CDD	cd18322	BTB_POZ_SKP1	coord: 6..120 e-value: 1.42515E-56 score: 171.236
IPR036296	SKP1-like, dimerisation domain superfamily	SUPERFAMILY	81382	Skp1 dimerisation domain-like	coord: 78..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC02G030050.1	CmUC02G030050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0097602	cullin family protein binding