CmUC02G029000 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC02G029000
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Pentatricopeptide repeat-containing protein
Location	CmU531Chr02: 2982681 .. 2983652 (+)
RNA-Seq Expression	CmUC02G029000
Synteny	CmUC02G029000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGAGGGACTTCGCCGGAGAGGGAGAGAGATATTGAACGATGAGTTTTATAGCAACTCCTCCGTCGCCGACAATTCTCAGTCCGCCGTTCAATTTACCGAGCTATGGCGGGAAAGCATCCTGCCTACGACTAGGCAGCGCGGAGGGATATCGGAGAGTGACTATGAGAGGCGGAAGTGAAAACCGGAAGCCATTGCAGAAGGGGAGGAACCTCAGCATCGAAGCAATTCAAGCGGTGCAGTCGTTGAAGCGAGCCAAGAAAGATTTACAACAATTGGACCGAGTGCATGATGCCAAACTTAGGCGTTTATTGAAGTTCGATATGATGGCTGTCCTTCGCGAGCTCCTTCGCCAGAACGAGTGTTCTCTGGCTCTTAAGGTGATGCCTCTGCACTTGAATTTTATGTTCATCTGTATCTTTGATTAGTTATCGGACTTATTCGATATTGCATGATCGGTATTGATTTTTAGAGGTGTCCACAGCAATGGCGAGACAGAGATTTTTGCTTATTGTAATTCCTTCAATACTCCTTGCTGATATTTTGTACGATTTATGTGTTAGGTTTTCGAAGATGTTAGAAATGAACACTGGTACAAGCCTCAGGTCTCGCTGTATGCTGATATTATTACAGTATTGGCTAGCAATGGATTGTTCGAACGAGTAGAAATTATTCATTCGTACTTGAAAGCAGAAGCTGACTTAGCACCTGAAATTGACGGGTTTAATGCTCTTTTGAAGGCCTTGGTTTGTCATAACTTAGGTGAACTTGCGATGGAGTCGTATTACTTGATGAAAGAAGTAGGTTGTGAGCCAGATAAGGCTTCCTTCAGGATTCTCATAAAAGGATTGGAATCAACGGGAGAGGCAGTTGATTTAAGAACTGTGAAGCAGGATGCACAAAAGCTTTATGGTGAATCACTTGAGTTTCTAGAGGAAGAAGAAGAGACAGCTACAGCCATATCTATGCACTGA

mRNA sequence

GGGAGGGACTTCGCCGGAGAGGGAGAGAGATATTGAACGATGAGTTTTATAGCAACTCCTCCGTCGCCGACAATTCTCAGTCCGCCGTTCAATTTACCGAGCTATGGCGGGAAAGCATCCTGCCTACGACTAGGCAGCGCGGAGGGATATCGGAGAGTGACTATGAGAGGCGGAAGTGAAAACCGGAAGCCATTGCAGAAGGGGAGGAACCTCAGCATCGAAGCAATTCAAGCGGTGCAGTCGTTGAAGCGAGCCAAGAAAGATTTACAACAATTGGACCGAGTGCATGATGCCAAACTTAGGCGTTTATTGAAGTTCGATATGATGGCTGTCCTTCGCGAGCTCCTTCGCCAGAACGAGTGTTCTCTGGCTCTTAAGGTTTTCGAAGATGTTAGAAATGAACACTGGTACAAGCCTCAGGTCTCGCTGTATGCTGATATTATTACAGTATTGGCTAGCAATGGATTGTTCGAACGAGTAGAAATTATTCATTCGTACTTGAAAGCAGAAGCTGACTTAGCACCTGAAATTGACGGGTTTAATGCTCTTTTGAAGGCCTTGGTTTGTCATAACTTAGGTGAACTTGCGATGGAGTCGTATTACTTGATGAAAGAAGTAGGTTGTGAGCCAGATAAGGCTTCCTTCAGGATTCTCATAAAAGGATTGGAATCAACGGGAGAGGCAGTTGATTTAAGAACTGTGAAGCAGGATGCACAAAAGCTTTATGGTGAATCACTTGAGTTTCTAGAGGAAGAAGAAGAGACAGCTACAGCCATATCTATGCACTGA

Coding sequence (CDS)

ATGAGTTTTATAGCAACTCCTCCGTCGCCGACAATTCTCAGTCCGCCGTTCAATTTACCGAGCTATGGCGGGAAAGCATCCTGCCTACGACTAGGCAGCGCGGAGGGATATCGGAGAGTGACTATGAGAGGCGGAAGTGAAAACCGGAAGCCATTGCAGAAGGGGAGGAACCTCAGCATCGAAGCAATTCAAGCGGTGCAGTCGTTGAAGCGAGCCAAGAAAGATTTACAACAATTGGACCGAGTGCATGATGCCAAACTTAGGCGTTTATTGAAGTTCGATATGATGGCTGTCCTTCGCGAGCTCCTTCGCCAGAACGAGTGTTCTCTGGCTCTTAAGGTTTTCGAAGATGTTAGAAATGAACACTGGTACAAGCCTCAGGTCTCGCTGTATGCTGATATTATTACAGTATTGGCTAGCAATGGATTGTTCGAACGAGTAGAAATTATTCATTCGTACTTGAAAGCAGAAGCTGACTTAGCACCTGAAATTGACGGGTTTAATGCTCTTTTGAAGGCCTTGGTTTGTCATAACTTAGGTGAACTTGCGATGGAGTCGTATTACTTGATGAAAGAAGTAGGTTGTGAGCCAGATAAGGCTTCCTTCAGGATTCTCATAAAAGGATTGGAATCAACGGGAGAGGCAGTTGATTTAAGAACTGTGAAGCAGGATGCACAAAAGCTTTATGGTGAATCACTTGAGTTTCTAGAGGAAGAAGAAGAGACAGCTACAGCCATATCTATGCACTGA

Protein sequence

MSFIATPPSPTILSPPFNLPSYGGKASCLRLGSAEGYRRVTMRGGSENRKPLQKGRNLSIEAIQAVQSLKRAKKDLQQLDRVHDAKLRRLLKFDMMAVLRELLRQNECSLALKVFEDVRNEHWYKPQVSLYADIITVLASNGLFERVEIIHSYLKAEADLAPEIDGFNALLKALVCHNLGELAMESYYLMKEVGCEPDKASFRILIKGLESTGEAVDLRTVKQDAQKLYGESLEFLEEEEETATAISMH

Homology

[Close]

BLAST of CmUC02G029000 vs. NCBI nr
Match: XP_038888189.1 (protein THYLAKOID ASSEMBLY 8, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 432.2 bits (1110), Expect = 3.1e-117
Identity = 223/249 (89.56%), Postives = 233/249 (93.57%), Query Frame = 0


Query: 1   MSFIATPPSPTILSPPFNLPSYGGKASCLRLGSAEGYRRVTMRGGSENRKPLQKGRNLSI 60
           MSF+  PPSPTILSP + L S GG+ASCL LG AEGYR+VTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLIRPPSPTILSPSYKLLSSGGEASCLLLGRAEGYRKVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKKDLQQLDRVHDAKLRRLLKFDMMAVLRELLRQNECSLALKVFEDVRN 120
           EAIQAVQSLKR KKDLQQLDRV+D+K+RRLLKFDMMAVLRELLRQNECSLALKVFEDVRN
Sbjct: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRN 120

Query: 121 EHWYKPQVSLYADIITVLASNGLFERVEIIHSYLKAEADLAPEIDGFNALLKALVCHNLG 180
           EHWYKPQVSLYADII VLASNGLFERV+IIHSYLKAE DLAPEIDGFNALLKALV HNLG
Sbjct: 121 EHWYKPQVSLYADIIRVLASNGLFERVQIIHSYLKAETDLAPEIDGFNALLKALVSHNLG 180

Query: 181 ELAMESYYLMKEVGCEPDKASFRILIKGLESTGEAVDLRTVKQDAQKLYGESLEFLEEEE 240
           ELAMESYYLMKE+GCEPDKASFRI+IKGLES GEAVDLRTVKQDAQKLYGESLEFLEEEE
Sbjct: 181 ELAMESYYLMKEIGCEPDKASFRIVIKGLESKGEAVDLRTVKQDAQKLYGESLEFLEEEE 240

Query: 241 ETATAISMH 250
           E A AIS H
Sbjct: 241 EAAIAISTH 249

[Close]

BLAST of CmUC02G029000 vs. NCBI nr
Match: XP_008451190.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g46870-like [Cucumis melo] >KAA0059596.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 417.2 bits (1071), Expect = 1.0e-112
Identity = 218/249 (87.55%), Postives = 230/249 (92.37%), Query Frame = 0


Query: 1   MSFIATPPSPTILSPPFNLPSYGGKASCLRLGSAEGYRRVTMRGGSENRKPLQKGRNLSI 60
           MSF+ T PSPTILSPP  LPS   K  CL+LG AEGY RVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLLTLPSPTILSPPLKLPSSVRKPCCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKKDLQQLDRVHDAKLRRLLKFDMMAVLRELLRQNECSLALKVFEDVRN 120
           EAIQAVQSLKR KKDLQQLDRV+D+K+RRLLKFDM+AVLRELLRQNECSLALKVFEDVRN
Sbjct: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRN 120

Query: 121 EHWYKPQVSLYADIITVLASNGLFERVEIIHSYLKAEADLAPEIDGFNALLKALVCHNLG 180
           EHWYKPQVSLYADIITVLASNGLFERV+II SY+KAE DLAPEIDGFNALLKALV HNLG
Sbjct: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAETDLAPEIDGFNALLKALVGHNLG 180

Query: 181 ELAMESYYLMKEVGCEPDKASFRILIKGLESTGEAVDLRTVKQDAQKLYGESLEFLEEEE 240
           +LAMESYYLMKEVGCEP+KASFRI+IKGLE  GEAVDLRTVKQDAQKLYGESLEFLEE E
Sbjct: 181 KLAMESYYLMKEVGCEPNKASFRIVIKGLELKGEAVDLRTVKQDAQKLYGESLEFLEEAE 240

Query: 241 ETATAISMH 250
           E ATAIS+H
Sbjct: 241 EGATAISIH 249

[Close]

BLAST of CmUC02G029000 vs. NCBI nr
Match: XP_031744771.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucumis sativus] >KGN43371.1 hypothetical protein Csa_020464 [Cucumis sativus])

HSP 1 Score: 416.4 bits (1069), Expect = 1.7e-112
Identity = 217/248 (87.50%), Postives = 229/248 (92.34%), Query Frame = 0


Query: 1   MSFIATPPSPTILSPPFNLPSYGGKASCLRLGSAEGYRRVTMRGGSENRKPLQKGRNLSI 60
           MSF+ATP SPTI SP    PS  G A CL+LG AEGY RVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLATPSSPTIFSPLLKFPSSVGTACCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKKDLQQLDRVHDAKLRRLLKFDMMAVLRELLRQNECSLALKVFEDVRN 120
           EAIQAVQSLKR KKDLQQLDRV+D+K+RRLLKFDM+AVLRELLRQNECSLALKVFEDVR 
Sbjct: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRK 120

Query: 121 EHWYKPQVSLYADIITVLASNGLFERVEIIHSYLKAEADLAPEIDGFNALLKALVCHNLG 180
           EHWYKPQVSLYADIITVLASNGLFERV+II SY+KAEADLAPEIDGFNALLKALV HNLG
Sbjct: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAEADLAPEIDGFNALLKALVSHNLG 180

Query: 181 ELAMESYYLMKEVGCEPDKASFRILIKGLESTGEAVDLRTVKQDAQKLYGESLEFLEEEE 240
           ELAMESYYLMK+VGCEPDKASFRI+IKGLES GEAVDLRTVKQDAQ+LYGESLEFLEEEE
Sbjct: 181 ELAMESYYLMKDVGCEPDKASFRIVIKGLESKGEAVDLRTVKQDAQRLYGESLEFLEEEE 240

Query: 241 ETATAISM 249
           E ATA S+
Sbjct: 241 EGATATSI 248

[Close]

BLAST of CmUC02G029000 vs. NCBI nr
Match: TYK08129.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 415.6 bits (1067), Expect = 3.0e-112
Identity = 217/249 (87.15%), Postives = 229/249 (91.97%), Query Frame = 0


Query: 1   MSFIATPPSPTILSPPFNLPSYGGKASCLRLGSAEGYRRVTMRGGSENRKPLQKGRNLSI 60
           MSF+ T PSPTILSPP  LPS   K  CL+LG AEGY RVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLLTLPSPTILSPPLKLPSSVRKPCCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKKDLQQLDRVHDAKLRRLLKFDMMAVLRELLRQNECSLALKVFEDVRN 120
           EAIQAVQSLKR KKDLQQLDRV+D+K+RRLLKFDM+AVLRELLRQNECSLALKVFEDVRN
Sbjct: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRN 120

Query: 121 EHWYKPQVSLYADIITVLASNGLFERVEIIHSYLKAEADLAPEIDGFNALLKALVCHNLG 180
           EHWYKPQVSLYADIITVLASNGLFERV+II SY+KAE DLAPEIDGFNALLK LV HNLG
Sbjct: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAETDLAPEIDGFNALLKVLVGHNLG 180

Query: 181 ELAMESYYLMKEVGCEPDKASFRILIKGLESTGEAVDLRTVKQDAQKLYGESLEFLEEEE 240
           +LAMESYYLMKEVGCEP+KASFRI+IKGLE  GEAVDLRTVKQDAQKLYGESLEFLEE E
Sbjct: 181 KLAMESYYLMKEVGCEPNKASFRIVIKGLELKGEAVDLRTVKQDAQKLYGESLEFLEEAE 240

Query: 241 ETATAISMH 250
           E ATAIS+H
Sbjct: 241 EGATAISIH 249

[Close]

BLAST of CmUC02G029000 vs. NCBI nr
Match: KAG6572189.1 (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 411.4 bits (1056), Expect = 5.6e-111
Identity = 212/249 (85.14%), Postives = 229/249 (91.97%), Query Frame = 0


Query: 1   MSFIATPPSPTILSPPFNLPSYGGKASCLRLGSAEGYRRVTMRGGSENRKPLQKGRNLSI 60
           MSF+AT PS TILSPP+ L   GGK S LRLG  EGYRRVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKKDLQQLDRVHDAKLRRLLKFDMMAVLRELLRQNECSLALKVFEDVRN 120
           EAIQAVQSLKRAKKDLQQLDRV+D+K+RRLLKFDMMAVLRELLRQNECSLALKVFEDVR 
Sbjct: 61  EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120

Query: 121 EHWYKPQVSLYADIITVLASNGLFERVEIIHSYLKAEADLAPEIDGFNALLKALVCHNLG 180
           E WYKPQVSLYADI++VLASNGLFE+V+IIHSY KAE DLAPEI+GFN LLKALV +NLG
Sbjct: 121 EDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYFKAETDLAPEIEGFNNLLKALVTYNLG 180

Query: 181 ELAMESYYLMKEVGCEPDKASFRILIKGLESTGEAVDLRTVKQDAQKLYGESLEFLEEEE 240
           +LAMESYYLMKEVGCEPDK SFRI+IKGLEST E+VDLRTVK+DAQ+LYGESLEFLEEE+
Sbjct: 181 DLAMESYYLMKEVGCEPDKTSFRIVIKGLESTRESVDLRTVKKDAQELYGESLEFLEEED 240

Query: 241 ETATAISMH 250
           E AT ISMH
Sbjct: 241 EAATGISMH 249

[Close]

BLAST of CmUC02G029000 vs. ExPASy Swiss-Prot
Match: Q9STF9 (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8L PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.4e-18
Identity = 63/193 (32.64%), Postives = 105/193 (54.40%), Query Frame = 0


Query: 49  RKPLQKGRNL-SIEAIQAVQSLKRAKKDLQQLDRVHDAKLRRLLKFDMMAVLRELLRQNE 108
           R PL +G+ L   EA+  +  LKR K+D ++LD+     + RLLK DM+AV+ EL RQ E
Sbjct: 63  RGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEE 122

Query: 109 CSLALKVFEDVRNEHWYKPQVSLYADIITVLASNGLFERVEIIHSYLKAEADLAPEIDGF 168
            +LA+K+FE ++ + WY+P V +Y D+I  LA +   +    +   +K E +L P+   +
Sbjct: 123 TALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKE-NLFPDSQTY 182

Query: 169 NALLKALVCHNLGELAMESYYLMKEVGCEPDKASFRILIKGLESTGEAVDLRTVKQDAQK 228
             +++  +       AM  Y  M +    P++  FR+L+KGL      +    VK+D ++
Sbjct: 183 TEVIRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGL--LPHPLLRNKVKKDFEE 242

Query: 229 LYGESLEFLEEEE 241
           L+ E   +   EE
Sbjct: 243 LFPEKHAYDPPEE 252

[Close]

BLAST of CmUC02G029000 vs. ExPASy Swiss-Prot
Match: Q9LVW6 (Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.8e-17
Identity = 69/177 (38.98%), Postives = 97/177 (54.80%), Query Frame = 0


Query: 44  GGSENRKPLQKGRNLSIEAIQAVQSLKRAKKDLQQLDRVHDAKLRRLLKFDMMAVLRELL 103
           G  +NR PL KGR LS EAIQ++QSLKRA +    L  +    LRRL+K D+++VLRELL
Sbjct: 34  GPRDNRGPLLKGRILSTEAIQSIQSLKRAHRTGVSLS-LTLRPLRRLIKSDLISVLRELL 93

Query: 104 RQNECSLALKVFEDVRNEHWYKP-QVSLYADIITVLASNGLFERVEIIHSYLKAEADLAP 163
           RQ+ C+LA+ V   +R E  Y P  + LYADI+  L  N  F+ ++ +   +    D   
Sbjct: 94  RQDYCTLAVHVLSTLRTE--YPPLDLVLYADIVNALTRNKEFDEIDRLIGEIDG-IDQRS 153

Query: 164 EIDGFNALLKALVCHNLGELAMESYYLMKEVG-----CEPDKASFRILIKGLESTGE 215
           +      L++A+V     E  +  Y LM+E G      E D+    +L KGL   GE
Sbjct: 154 DDKALAKLIRAVVGAERRESVVRVYTLMRESGWGSESWEADEYVAEVLSKGLLRLGE 206

[Close]

BLAST of CmUC02G029000 vs. ExPASy Swiss-Prot
Match: Q1PFH7 (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX=3702 GN=At1g62350 PE=2 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.5e-15
Identity = 57/172 (33.14%), Postives = 91/172 (52.91%), Query Frame = 0


Query: 58  LSIEAIQAVQSLKRAKKDLQQLDRVHDAKLRRLLKFDMMAVLRELLRQNECSLALKVFED 117
           +S E + A + LKR +    +LDR   + + RLLK D+++VL E  RQN+  L +K++E 
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 118 VRNEHWYKPQVSLYADIITVLASNGLFERVEIIHSYLKAEADLAPEIDGFNALLKALVCH 177
           VR E WY+P +  Y D++ +LA N   +  + +   LK E  L  +   F  L++  + +
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQ-HTFGDLVRGFLDN 120

Query: 178 NLGELAMESYYLMKEVGCEPDKASFRILIKGLESTGEAVDLRTVKQDAQKLY 230
            L   AM  Y  M+E    P    FR+++KGL    E  +   VK D  +L+
Sbjct: 121 ELPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELRE--KVKDDFLELF 169

[Close]

BLAST of CmUC02G029000 vs. ExPASy Swiss-Prot
Match: O82178 (Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana OX=3702 GN=At2g35130 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.9e-08
Identity = 35/119 (29.41%), Postives = 64/119 (53.78%), Query Frame = 0


Query: 110 LALKVFEDVRNEHWYKPQVSLYADIITVLASNGLFERVEIIHSYLKAEADLAPEIDGFNA 169
           ++ K++ ++R+ H  KP +  Y  ++   A  GL E+ E I   L+ E  L P++  +NA
Sbjct: 282 MSWKLYCEMRS-HQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQ-EDGLEPDVYVYNA 341

Query: 170 LLKALVCHNLGELAMESYYLMKEVGCEPDKASFRILIKGLESTGEAVDLRTVKQDAQKL 229
           L+++         A E + LM+ +GCEPD+AS+ I++      G   D   V ++ ++L
Sbjct: 342 LMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRL 398

[Close]

BLAST of CmUC02G029000 vs. ExPASy Swiss-Prot
Match: Q9SCP4 (Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana OX=3702 GN=At3g53170 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.1e-07
Identity = 32/113 (28.32%), Postives = 58/113 (51.33%), Query Frame = 0


Query: 95  MMAVLRELLRQNECSLALKVFEDVRNEHWYKPQVSLYADIITVLASNGLFERVEIIHSYL 154
           ++  L E +++N    ALK+F  +R +HWY+P+   Y  +  VL +    ++  ++   +
Sbjct: 61  VLEALDEAIKENRWQSALKIFNLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVM 120

Query: 155 KAEADLAPEIDGFNALLKALVCHNLGELAMESYYLMKEVG-CEPDKASFRILI 207
            +E  L P ID + +L+       L + A  +   MK V  C+PD  +F +LI
Sbjct: 121 LSEG-LKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLI 172

[Close]

BLAST of CmUC02G029000 vs. ExPASy TrEMBL
Match: A0A5A7UZI6 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold54G00170 PE=4 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 5.0e-113
Identity = 218/249 (87.55%), Postives = 230/249 (92.37%), Query Frame = 0


Query: 1   MSFIATPPSPTILSPPFNLPSYGGKASCLRLGSAEGYRRVTMRGGSENRKPLQKGRNLSI 60
           MSF+ T PSPTILSPP  LPS   K  CL+LG AEGY RVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLLTLPSPTILSPPLKLPSSVRKPCCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKKDLQQLDRVHDAKLRRLLKFDMMAVLRELLRQNECSLALKVFEDVRN 120
           EAIQAVQSLKR KKDLQQLDRV+D+K+RRLLKFDM+AVLRELLRQNECSLALKVFEDVRN
Sbjct: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRN 120

Query: 121 EHWYKPQVSLYADIITVLASNGLFERVEIIHSYLKAEADLAPEIDGFNALLKALVCHNLG 180
           EHWYKPQVSLYADIITVLASNGLFERV+II SY+KAE DLAPEIDGFNALLKALV HNLG
Sbjct: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAETDLAPEIDGFNALLKALVGHNLG 180

Query: 181 ELAMESYYLMKEVGCEPDKASFRILIKGLESTGEAVDLRTVKQDAQKLYGESLEFLEEEE 240
           +LAMESYYLMKEVGCEP+KASFRI+IKGLE  GEAVDLRTVKQDAQKLYGESLEFLEE E
Sbjct: 181 KLAMESYYLMKEVGCEPNKASFRIVIKGLELKGEAVDLRTVKQDAQKLYGESLEFLEEAE 240

Query: 241 ETATAISMH 250
           E ATAIS+H
Sbjct: 241 EGATAISIH 249

[Close]

BLAST of CmUC02G029000 vs. ExPASy TrEMBL
Match: A0A1S3BRZ8 (pentatricopeptide repeat-containing protein At3g46870-like OS=Cucumis melo OX=3656 GN=LOC103492562 PE=4 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 5.0e-113
Identity = 218/249 (87.55%), Postives = 230/249 (92.37%), Query Frame = 0


Query: 1   MSFIATPPSPTILSPPFNLPSYGGKASCLRLGSAEGYRRVTMRGGSENRKPLQKGRNLSI 60
           MSF+ T PSPTILSPP  LPS   K  CL+LG AEGY RVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLLTLPSPTILSPPLKLPSSVRKPCCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKKDLQQLDRVHDAKLRRLLKFDMMAVLRELLRQNECSLALKVFEDVRN 120
           EAIQAVQSLKR KKDLQQLDRV+D+K+RRLLKFDM+AVLRELLRQNECSLALKVFEDVRN
Sbjct: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRN 120

Query: 121 EHWYKPQVSLYADIITVLASNGLFERVEIIHSYLKAEADLAPEIDGFNALLKALVCHNLG 180
           EHWYKPQVSLYADIITVLASNGLFERV+II SY+KAE DLAPEIDGFNALLKALV HNLG
Sbjct: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAETDLAPEIDGFNALLKALVGHNLG 180

Query: 181 ELAMESYYLMKEVGCEPDKASFRILIKGLESTGEAVDLRTVKQDAQKLYGESLEFLEEEE 240
           +LAMESYYLMKEVGCEP+KASFRI+IKGLE  GEAVDLRTVKQDAQKLYGESLEFLEE E
Sbjct: 181 KLAMESYYLMKEVGCEPNKASFRIVIKGLELKGEAVDLRTVKQDAQKLYGESLEFLEEAE 240

Query: 241 ETATAISMH 250
           E ATAIS+H
Sbjct: 241 EGATAISIH 249

[Close]

BLAST of CmUC02G029000 vs. ExPASy TrEMBL
Match: A0A0A0K6A9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G027870 PE=4 SV=1)

HSP 1 Score: 416.4 bits (1069), Expect = 8.5e-113
Identity = 217/248 (87.50%), Postives = 229/248 (92.34%), Query Frame = 0


Query: 1   MSFIATPPSPTILSPPFNLPSYGGKASCLRLGSAEGYRRVTMRGGSENRKPLQKGRNLSI 60
           MSF+ATP SPTI SP    PS  G A CL+LG AEGY RVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLATPSSPTIFSPLLKFPSSVGTACCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKKDLQQLDRVHDAKLRRLLKFDMMAVLRELLRQNECSLALKVFEDVRN 120
           EAIQAVQSLKR KKDLQQLDRV+D+K+RRLLKFDM+AVLRELLRQNECSLALKVFEDVR 
Sbjct: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRK 120

Query: 121 EHWYKPQVSLYADIITVLASNGLFERVEIIHSYLKAEADLAPEIDGFNALLKALVCHNLG 180
           EHWYKPQVSLYADIITVLASNGLFERV+II SY+KAEADLAPEIDGFNALLKALV HNLG
Sbjct: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAEADLAPEIDGFNALLKALVSHNLG 180

Query: 181 ELAMESYYLMKEVGCEPDKASFRILIKGLESTGEAVDLRTVKQDAQKLYGESLEFLEEEE 240
           ELAMESYYLMK+VGCEPDKASFRI+IKGLES GEAVDLRTVKQDAQ+LYGESLEFLEEEE
Sbjct: 181 ELAMESYYLMKDVGCEPDKASFRIVIKGLESKGEAVDLRTVKQDAQRLYGESLEFLEEEE 240

Query: 241 ETATAISM 249
           E ATA S+
Sbjct: 241 EGATATSI 248

[Close]

BLAST of CmUC02G029000 vs. ExPASy TrEMBL
Match: A0A5D3CCT4 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00060 PE=4 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 1.4e-112
Identity = 217/249 (87.15%), Postives = 229/249 (91.97%), Query Frame = 0


Query: 1   MSFIATPPSPTILSPPFNLPSYGGKASCLRLGSAEGYRRVTMRGGSENRKPLQKGRNLSI 60
           MSF+ T PSPTILSPP  LPS   K  CL+LG AEGY RVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLLTLPSPTILSPPLKLPSSVRKPCCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKKDLQQLDRVHDAKLRRLLKFDMMAVLRELLRQNECSLALKVFEDVRN 120
           EAIQAVQSLKR KKDLQQLDRV+D+K+RRLLKFDM+AVLRELLRQNECSLALKVFEDVRN
Sbjct: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRN 120

Query: 121 EHWYKPQVSLYADIITVLASNGLFERVEIIHSYLKAEADLAPEIDGFNALLKALVCHNLG 180
           EHWYKPQVSLYADIITVLASNGLFERV+II SY+KAE DLAPEIDGFNALLK LV HNLG
Sbjct: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAETDLAPEIDGFNALLKVLVGHNLG 180

Query: 181 ELAMESYYLMKEVGCEPDKASFRILIKGLESTGEAVDLRTVKQDAQKLYGESLEFLEEEE 240
           +LAMESYYLMKEVGCEP+KASFRI+IKGLE  GEAVDLRTVKQDAQKLYGESLEFLEE E
Sbjct: 181 KLAMESYYLMKEVGCEPNKASFRIVIKGLELKGEAVDLRTVKQDAQKLYGESLEFLEEAE 240

Query: 241 ETATAISMH 250
           E ATAIS+H
Sbjct: 241 EGATAISIH 249

[Close]

BLAST of CmUC02G029000 vs. ExPASy TrEMBL
Match: A0A6J1HX85 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111468293 PE=4 SV=1)

HSP 1 Score: 411.0 bits (1055), Expect = 3.6e-111
Identity = 213/249 (85.54%), Postives = 229/249 (91.97%), Query Frame = 0


Query: 1   MSFIATPPSPTILSPPFNLPSYGGKASCLRLGSAEGYRRVTMRGGSENRKPLQKGRNLSI 60
           MSF+AT PS TILSPP+ L   GGK S LRLG  EGYRRVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKKDLQQLDRVHDAKLRRLLKFDMMAVLRELLRQNECSLALKVFEDVRN 120
           EAIQAVQSLKRAKKDLQQLDRV+D+K+RRLLKFDMMAVLRELLRQNECSLALKVFEDVR 
Sbjct: 61  EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120

Query: 121 EHWYKPQVSLYADIITVLASNGLFERVEIIHSYLKAEADLAPEIDGFNALLKALVCHNLG 180
           E WYKPQVSLYADI++VLASNGLFE+V+IIHSYLKAE DLAPEI+GFN LLKALV +NLG
Sbjct: 121 EDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYLKAETDLAPEIEGFNNLLKALVSYNLG 180

Query: 181 ELAMESYYLMKEVGCEPDKASFRILIKGLESTGEAVDLRTVKQDAQKLYGESLEFLEEEE 240
           ELAMESYYLMKEVGCEPDKASFRI+IKGLEST E+VDLR VK+DAQ+LYGESLEFLEEE+
Sbjct: 181 ELAMESYYLMKEVGCEPDKASFRIVIKGLESTRESVDLRPVKKDAQELYGESLEFLEEED 240

Query: 241 ETATAISMH 250
           E AT IS H
Sbjct: 241 EAATGISTH 249

[Close]

BLAST of CmUC02G029000 vs. TAIR 10
Match: AT5G09320.1 (Vacuolar sorting protein 9 (VPS9) domain )

HSP 1 Score: 228.4 bits (581), Expect = 6.3e-60
Identity = 125/224 (55.80%), Postives = 157/224 (70.09%), Query Frame = 0


Query: 40  VTMRGGSENRKPLQKGRNLSIEAIQAVQSLKRAKKDLQQ---------------LDRVHD 99
           + MR  S+NRKPLQ+GR LSIEAIQAVQ+LKRA   L                 LDRV  
Sbjct: 487 IKMRDRSKNRKPLQRGRMLSIEAIQAVQALKRANPLLPPPPVPSTSTTSSSSALLDRVII 546

Query: 100 AKLRRLLKFDMMAVLRELLRQNECSLALKVFEDVRNEHWYKPQVSLYADIITVLASNGLF 159
           +K RRLLKFDM+AVLRELLRQNECSLALKVFE++R E+WYKPQV +Y D+ITV+A N L 
Sbjct: 547 SKFRRLLKFDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMADNSLM 606

Query: 160 ERVEIIHSYLKAEADLAPEIDGFNALLKALVCHNLGELAMESYYLMKEVGCEPDKASFRI 219
           E V  ++S +K+E  L  EI+ FN LL  L+ H L +L M+ Y  M+ +G EPD+ASFR+
Sbjct: 607 EEVNYLYSAMKSEKGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQSIGYEPDRASFRV 666

Query: 220 LIKGLESTGEAVDLRTVKQDAQKLYGESLEFLEEEEETATAISM 249
           L+ GLES GE      V+QDA + YGESLEF+EE+EE ++  S+
Sbjct: 667 LVLGLESNGEMGLSAIVRQDAHEYYGESLEFIEEDEEISSGTSV 710

[Close]

BLAST of CmUC02G029000 vs. TAIR 10
Match: AT3G46870.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 93.6 bits (231), Expect = 2.4e-19
Identity = 63/193 (32.64%), Postives = 105/193 (54.40%), Query Frame = 0


Query: 49  RKPLQKGRNL-SIEAIQAVQSLKRAKKDLQQLDRVHDAKLRRLLKFDMMAVLRELLRQNE 108
           R PL +G+ L   EA+  +  LKR K+D ++LD+     + RLLK DM+AV+ EL RQ E
Sbjct: 63  RGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEE 122

Query: 109 CSLALKVFEDVRNEHWYKPQVSLYADIITVLASNGLFERVEIIHSYLKAEADLAPEIDGF 168
            +LA+K+FE ++ + WY+P V +Y D+I  LA +   +    +   +K E +L P+   +
Sbjct: 123 TALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKE-NLFPDSQTY 182

Query: 169 NALLKALVCHNLGELAMESYYLMKEVGCEPDKASFRILIKGLESTGEAVDLRTVKQDAQK 228
             +++  +       AM  Y  M +    P++  FR+L+KGL      +    VK+D ++
Sbjct: 183 TEVIRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGL--LPHPLLRNKVKKDFEE 242

Query: 229 LYGESLEFLEEEE 241
           L+ E   +   EE
Sbjct: 243 LFPEKHAYDPPEE 252

[Close]

BLAST of CmUC02G029000 vs. TAIR 10
Match: AT3G27750.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Vacuolar sorting protein 9 (VPS9) domain (TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 90.1 bits (222), Expect = 2.7e-18
Identity = 69/177 (38.98%), Postives = 97/177 (54.80%), Query Frame = 0


Query: 44  GGSENRKPLQKGRNLSIEAIQAVQSLKRAKKDLQQLDRVHDAKLRRLLKFDMMAVLRELL 103
           G  +NR PL KGR LS EAIQ++QSLKRA +    L  +    LRRL+K D+++VLRELL
Sbjct: 34  GPRDNRGPLLKGRILSTEAIQSIQSLKRAHRTGVSLS-LTLRPLRRLIKSDLISVLRELL 93

Query: 104 RQNECSLALKVFEDVRNEHWYKP-QVSLYADIITVLASNGLFERVEIIHSYLKAEADLAP 163
           RQ+ C+LA+ V   +R E  Y P  + LYADI+  L  N  F+ ++ +   +    D   
Sbjct: 94  RQDYCTLAVHVLSTLRTE--YPPLDLVLYADIVNALTRNKEFDEIDRLIGEIDG-IDQRS 153

Query: 164 EIDGFNALLKALVCHNLGELAMESYYLMKEVG-----CEPDKASFRILIKGLESTGE 215
           +      L++A+V     E  +  Y LM+E G      E D+    +L KGL   GE
Sbjct: 154 DDKALAKLIRAVVGAERRESVVRVYTLMRESGWGSESWEADEYVAEVLSKGLLRLGE 206

[Close]

BLAST of CmUC02G029000 vs. TAIR 10
Match: AT1G62350.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 83.6 bits (205), Expect = 2.5e-16
Identity = 57/172 (33.14%), Postives = 91/172 (52.91%), Query Frame = 0


Query: 58  LSIEAIQAVQSLKRAKKDLQQLDRVHDAKLRRLLKFDMMAVLRELLRQNECSLALKVFED 117
           +S E + A + LKR +    +LDR   + + RLLK D+++VL E  RQN+  L +K++E 
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 118 VRNEHWYKPQVSLYADIITVLASNGLFERVEIIHSYLKAEADLAPEIDGFNALLKALVCH 177
           VR E WY+P +  Y D++ +LA N   +  + +   LK E  L  +   F  L++  + +
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQ-HTFGDLVRGFLDN 120

Query: 178 NLGELAMESYYLMKEVGCEPDKASFRILIKGLESTGEAVDLRTVKQDAQKLY 230
            L   AM  Y  M+E    P    FR+++KGL    E  +   VK D  +L+
Sbjct: 121 ELPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELRE--KVKDDFLELF 169

[Close]

BLAST of CmUC02G029000 vs. TAIR 10
Match: AT2G35130.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-09
Identity = 35/119 (29.41%), Postives = 64/119 (53.78%), Query Frame = 0


Query: 110 LALKVFEDVRNEHWYKPQVSLYADIITVLASNGLFERVEIIHSYLKAEADLAPEIDGFNA 169
           ++ K++ ++R+ H  KP +  Y  ++   A  GL E+ E I   L+ E  L P++  +NA
Sbjct: 282 MSWKLYCEMRS-HQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQ-EDGLEPDVYVYNA 341

Query: 170 LLKALVCHNLGELAMESYYLMKEVGCEPDKASFRILIKGLESTGEAVDLRTVKQDAQKL 229
           L+++         A E + LM+ +GCEPD+AS+ I++      G   D   V ++ ++L
Sbjct: 342 LMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRL 398

The following BLAST results are available for this feature:

BLAST of CmUC02G029000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888189.1	3.1e-117	89.56	protein THYLAKOID ASSEMBLY 8, chloroplastic-like [Benincasa hispida]	[more]
XP_008451190.1	1.0e-112	87.55	PREDICTED: pentatricopeptide repeat-containing protein At3g46870-like [Cucumis m...	[more]
XP_031744771.1	1.7e-112	87.50	protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucumis sativus] >KGN43371.1 h...	[more]
TYK08129.1	3.0e-112	87.15	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
KAG6572189.1	5.6e-111	85.14	Protein THYLAKOID ASSEMBLY 8-like, chloroplastic, partial [Cucurbita argyrosperm...	[more]

BLAST of CmUC02G029000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STF9	3.4e-18	32.64	Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
Q9LVW6	3.8e-17	38.98	Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=T...	[more]
Q1PFH7	3.5e-15	33.14	Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX...	[more]
O82178	1.9e-08	29.41	Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana OX...	[more]
Q9SCP4	2.1e-07	28.32	Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana OX...	[more]

BLAST of CmUC02G029000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UZI6	5.0e-113	87.55	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3BRZ8	5.0e-113	87.55	pentatricopeptide repeat-containing protein At3g46870-like OS=Cucumis melo OX=36...	[more]
A0A0A0K6A9	8.5e-113	87.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G027870 PE=4 SV=1	[more]
A0A5D3CCT4	1.4e-112	87.15	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A6J1HX85	3.6e-111	85.54	protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita maxima OX=3661 GN=...	[more]

BLAST of CmUC02G029000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G09320.1	6.3e-60	55.80	Vacuolar sorting protein 9 (VPS9) domain	[more]
AT3G46870.1	2.4e-19	32.64	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G27750.1	2.7e-18	38.98	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G62350.1	2.5e-16	33.14	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G35130.1	1.3e-09	29.41	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 69..89
None	No IPR available	PANTHER	PTHR47594:SF4	THYLAKOID ASSEMBLY8	coord: 26..244
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 165..209 e-value: 9.9E-8 score: 32.1
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 167..198 e-value: 0.0013 score: 16.7
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 57..228 e-value: 4.3E-44 score: 152.3
IPR044190	Protein THYLAKOID ASSEMBLY 8-like	PANTHER	PTHR47594	PPR CONTAINING PLANT-LIKE PROTEIN	coord: 26..244

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC02G029000.1	CmUC02G029000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0000373	Group II intron splicing
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding