CmUC02G028820 (gene) Watermelon (USVL531) v1

Overview
NameCmUC02G028820
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionPHYTOCHROME_2 domain-containing protein
LocationCmU531Chr02: 2766763 .. 2767188 (-)
RNA-Seq ExpressionCmUC02G028820
SyntenyCmUC02G028820
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCAAGGACCCCGAAGAGGCCGCCAACACGGCCACTGAGGAAGAAAGTTTGGCATTCAAGAAGAAGCGGGCTCGACGCGTGAGCTTTGCTGATGTCGAGATCACTTCTGTGCATATCTTTAAGCGCGATGAGGACTACGAGACGCCTCCTGAGCCCCAAGCCACTCCGGAGGCTGCTCTTCCGGACAACGAGGTCCTAGGGTTCTTCAGGGACTTGGCTGATAGCGATGATTCCCGTGAATCTTCGCCTAATTTAGATGACGATGTTCTTGGGCAGAGGAAATCGTTTTTGAGGCCGCTTGGATCGCCGTCGCCGGGGAGTATTTCTGCCGGTTCTGCAGCCTCCAATGATGGCATGTTTTTCTGTTTCTTTCTCTCTTCGTTTTATGTAGCATTTTGTTTGTTGGGTTTTTCGATTTGA

mRNA sequence

ATGGCTTCCAAGGACCCCGAAGAGGCCGCCAACACGGCCACTGAGGAAGAAAGTTTGGCATTCAAGAAGAAGCGGGCTCGACGCGTGAGCTTTGCTGATGTCGAGATCACTTCTGTGCATATCTTTAAGCGCGATGAGGACTACGAGACGCCTCCTGAGCCCCAAGCCACTCCGGAGGCTGCTCTTCCGGACAACGAGGTCCTAGGGTTCTTCAGGGACTTGGCTGATAGCGATGATTCCCGTGAATCTTCGCCTAATTTAGATGACGATGTTCTTGGGCAGAGGAAATCGTTTTTGAGGCCGCTTGGATCGCCGTCGCCGGGGAGTATTTCTGCCGGTTCTGCAGCCTCCAATGATGGCATGTTTTTCTGTTTCTTTCTCTCTTCGTTTTATGTAGCATTTTGTTTGTTGGGTTTTTCGATTTGA

Coding sequence (CDS)

ATGGCTTCCAAGGACCCCGAAGAGGCCGCCAACACGGCCACTGAGGAAGAAAGTTTGGCATTCAAGAAGAAGCGGGCTCGACGCGTGAGCTTTGCTGATGTCGAGATCACTTCTGTGCATATCTTTAAGCGCGATGAGGACTACGAGACGCCTCCTGAGCCCCAAGCCACTCCGGAGGCTGCTCTTCCGGACAACGAGGTCCTAGGGTTCTTCAGGGACTTGGCTGATAGCGATGATTCCCGTGAATCTTCGCCTAATTTAGATGACGATGTTCTTGGGCAGAGGAAATCGTTTTTGAGGCCGCTTGGATCGCCGTCGCCGGGGAGTATTTCTGCCGGTTCTGCAGCCTCCAATGATGGCATGTTTTTCTGTTTCTTTCTCTCTTCGTTTTATGTAGCATTTTGTTTGTTGGGTTTTTCGATTTGA

Protein sequence

MASKDPEEAANTATEEESLAFKKKRARRVSFADVEITSVHIFKRDEDYETPPEPQATPEAALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSAASNDGMFFCFFLSSFYVAFCLLGFSI
Homology
[Close]
BLAST of CmUC02G028820 vs. NCBI nr
Match: XP_004144623.1 (uncharacterized protein LOC101212645 isoform X1 [Cucumis sativus] >XP_031744676.1 uncharacterized protein LOC101212645 isoform X1 [Cucumis sativus] >KGN43391.1 hypothetical protein Csa_020302 [Cucumis sativus])

HSP 1 Score: 222.2 bits (565), Expect = 2.7e-54
Identity = 115/119 (96.64%), Postives = 115/119 (96.64%), Query Frame = 0 

Query: 1   MASKDPEEAANTATEEESLAFKKKRARRVSFADVEITSVHIFKRDEDYETPPEPQATPEA 60
           MASKDPEE ANTATEEESLAFKKKRARRVSFAD EITSVHIFKRDEDYETPPEPQ TPEA
Sbjct: 1   MASKDPEETANTATEEESLAFKKKRARRVSFADREITSVHIFKRDEDYETPPEPQTTPEA 60

Query: 61  ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSAASND 120
           ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSA SND
Sbjct: 61  ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSATSND 119

[Close]
BLAST of CmUC02G028820 vs. NCBI nr
Match: XP_031744677.1 (uncharacterized protein LOC101212645 isoform X2 [Cucumis sativus])

HSP 1 Score: 222.2 bits (565), Expect = 2.7e-54
Identity = 115/119 (96.64%), Postives = 115/119 (96.64%), Query Frame = 0 

Query: 1   MASKDPEEAANTATEEESLAFKKKRARRVSFADVEITSVHIFKRDEDYETPPEPQATPEA 60
           MASKDPEE ANTATEEESLAFKKKRARRVSFAD EITSVHIFKRDEDYETPPEPQ TPEA
Sbjct: 1   MASKDPEETANTATEEESLAFKKKRARRVSFADREITSVHIFKRDEDYETPPEPQTTPEA 60

Query: 61  ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSAASND 120
           ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSA SND
Sbjct: 61  ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSATSND 119

[Close]
BLAST of CmUC02G028820 vs. NCBI nr
Match: KAA0059264.1 (uncharacterized protein E6C27_scaffold430G001990 [Cucumis melo var. makuwa])

HSP 1 Score: 221.1 bits (562), Expect = 6.1e-54
Identity = 114/119 (95.80%), Postives = 114/119 (95.80%), Query Frame = 0 

Query: 1   MASKDPEEAANTATEEESLAFKKKRARRVSFADVEITSVHIFKRDEDYETPPEPQATPEA 60
           MASKDPEE ANTATEEESLAFKKKRARRVSFAD EITSVHIF RDEDYETPPEPQ TPEA
Sbjct: 1   MASKDPEETANTATEEESLAFKKKRARRVSFADCEITSVHIFNRDEDYETPPEPQTTPEA 60

Query: 61  ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSAASND 120
           ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSA SND
Sbjct: 61  ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSATSND 119

[Close]
BLAST of CmUC02G028820 vs. NCBI nr
Match: XP_016902820.1 (PREDICTED: uncharacterized protein LOC103500493 isoform X2 [Cucumis melo])

HSP 1 Score: 221.1 bits (562), Expect = 6.1e-54
Identity = 114/119 (95.80%), Postives = 114/119 (95.80%), Query Frame = 0 

Query: 1   MASKDPEEAANTATEEESLAFKKKRARRVSFADVEITSVHIFKRDEDYETPPEPQATPEA 60
           MASKDPEE ANTATEEESLAFKKKRARRVSFAD EITSVHIF RDEDYETPPEPQ TPEA
Sbjct: 1   MASKDPEETANTATEEESLAFKKKRARRVSFADCEITSVHIFNRDEDYETPPEPQTTPEA 60

Query: 61  ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSAASND 120
           ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSA SND
Sbjct: 61  ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSATSND 119

[Close]
BLAST of CmUC02G028820 vs. NCBI nr
Match: XP_008462023.1 (PREDICTED: uncharacterized protein LOC103500493 isoform X3 [Cucumis melo])

HSP 1 Score: 221.1 bits (562), Expect = 6.1e-54
Identity = 114/119 (95.80%), Postives = 114/119 (95.80%), Query Frame = 0 

Query: 1   MASKDPEEAANTATEEESLAFKKKRARRVSFADVEITSVHIFKRDEDYETPPEPQATPEA 60
           MASKDPEE ANTATEEESLAFKKKRARRVSFAD EITSVHIF RDEDYETPPEPQ TPEA
Sbjct: 1   MASKDPEETANTATEEESLAFKKKRARRVSFADCEITSVHIFNRDEDYETPPEPQTTPEA 60

Query: 61  ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSAASND 120
           ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSA SND
Sbjct: 61  ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSATSND 119

[Close]
BLAST of CmUC02G028820 vs. ExPASy TrEMBL
Match: A0A0A0K6D4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G031030 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.3e-54
Identity = 115/119 (96.64%), Postives = 115/119 (96.64%), Query Frame = 0 

Query: 1   MASKDPEEAANTATEEESLAFKKKRARRVSFADVEITSVHIFKRDEDYETPPEPQATPEA 60
           MASKDPEE ANTATEEESLAFKKKRARRVSFAD EITSVHIFKRDEDYETPPEPQ TPEA
Sbjct: 1   MASKDPEETANTATEEESLAFKKKRARRVSFADREITSVHIFKRDEDYETPPEPQTTPEA 60

Query: 61  ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSAASND 120
           ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSA SND
Sbjct: 61  ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSATSND 119

[Close]
BLAST of CmUC02G028820 vs. ExPASy TrEMBL
Match: A0A5A7UW10 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001990 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.0e-54
Identity = 114/119 (95.80%), Postives = 114/119 (95.80%), Query Frame = 0 

Query: 1   MASKDPEEAANTATEEESLAFKKKRARRVSFADVEITSVHIFKRDEDYETPPEPQATPEA 60
           MASKDPEE ANTATEEESLAFKKKRARRVSFAD EITSVHIF RDEDYETPPEPQ TPEA
Sbjct: 1   MASKDPEETANTATEEESLAFKKKRARRVSFADCEITSVHIFNRDEDYETPPEPQTTPEA 60

Query: 61  ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSAASND 120
           ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSA SND
Sbjct: 61  ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSATSND 119

[Close]
BLAST of CmUC02G028820 vs. ExPASy TrEMBL
Match: A0A5D3BZ82 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84663G00140 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.0e-54
Identity = 114/119 (95.80%), Postives = 114/119 (95.80%), Query Frame = 0 

Query: 1   MASKDPEEAANTATEEESLAFKKKRARRVSFADVEITSVHIFKRDEDYETPPEPQATPEA 60
           MASKDPEE ANTATEEESLAFKKKRARRVSFAD EITSVHIF RDEDYETPPEPQ TPEA
Sbjct: 1   MASKDPEETANTATEEESLAFKKKRARRVSFADCEITSVHIFNRDEDYETPPEPQTTPEA 60

Query: 61  ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSAASND 120
           ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSA SND
Sbjct: 61  ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSATSND 119

[Close]
BLAST of CmUC02G028820 vs. ExPASy TrEMBL
Match: A0A1S3CFV9 (uncharacterized protein LOC103500493 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103500493 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.0e-54
Identity = 114/119 (95.80%), Postives = 114/119 (95.80%), Query Frame = 0 

Query: 1   MASKDPEEAANTATEEESLAFKKKRARRVSFADVEITSVHIFKRDEDYETPPEPQATPEA 60
           MASKDPEE ANTATEEESLAFKKKRARRVSFAD EITSVHIF RDEDYETPPEPQ TPEA
Sbjct: 1   MASKDPEETANTATEEESLAFKKKRARRVSFADCEITSVHIFNRDEDYETPPEPQTTPEA 60

Query: 61  ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSAASND 120
           ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSA SND
Sbjct: 61  ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSATSND 119

[Close]
BLAST of CmUC02G028820 vs. ExPASy TrEMBL
Match: A0A1S4E4B4 (uncharacterized protein LOC103500493 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500493 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.0e-54
Identity = 114/119 (95.80%), Postives = 114/119 (95.80%), Query Frame = 0 

Query: 1   MASKDPEEAANTATEEESLAFKKKRARRVSFADVEITSVHIFKRDEDYETPPEPQATPEA 60
           MASKDPEE ANTATEEESLAFKKKRARRVSFAD EITSVHIF RDEDYETPPEPQ TPEA
Sbjct: 1   MASKDPEETANTATEEESLAFKKKRARRVSFADCEITSVHIFNRDEDYETPPEPQTTPEA 60

Query: 61  ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSAASND 120
           ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSA SND
Sbjct: 61  ALPDNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGSISAGSATSND 119

[Close]
BLAST of CmUC02G028820 vs. TAIR 10
Match: AT2G04235.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; Has 713 Blast hits to 345 proteins in 122 species: Archae - 2; Bacteria - 262; Metazoa - 138; Fungi - 55; Plants - 39; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink). )

HSP 1 Score: 96.7 bits (239), Expect = 1.6e-20
Identity = 67/144 (46.53%), Postives = 88/144 (61.11%), Query Frame = 0 

Query: 1   MASKDPEEAANT----ATEEESLAFKKKRARRVSFADVEITSVHIFKRDEDYETPP---- 60
           MAS+ PE+  N      T+EES+A ++KR RRVSFAD EITSVHIF RDEDYETPP    
Sbjct: 1   MASEKPEDPMNNTAGIGTDEESIAQRRKRLRRVSFADREITSVHIFNRDEDYETPPNTSA 60

Query: 61  -EPQATPEAALP--DNEVLGFFRDLADSDDSRESSPNLDDDVLGQRKSFLRPLGSPSPGS 120
            +PQ   + + P  DN+V+ FF +L+D +D+        + +L   KSFLRP  SPS G 
Sbjct: 61  AKPQNGGDTSEPDEDNKVIRFFGELSDREDTDGDGDGEYEPILD--KSFLRPKYSPSSGG 120

Query: 121 ISAGSAASNDG--MFFCFFLSSFY 132
            + GSA S++G     C F   F+
Sbjct: 121 STVGSATSDNGTLQLLCEFRVLFF 142

The following BLAST results are available for this feature:
BLAST of CmUC02G028820 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004144623.12.7e-5496.64uncharacterized protein LOC101212645 isoform X1 [Cucumis sativus] >XP_031744676.... [more]
XP_031744677.12.7e-5496.64uncharacterized protein LOC101212645 isoform X2 [Cucumis sativus][more]
KAA0059264.16.1e-5495.80uncharacterized protein E6C27_scaffold430G001990 [Cucumis melo var. makuwa][more]
XP_016902820.16.1e-5495.80PREDICTED: uncharacterized protein LOC103500493 isoform X2 [Cucumis melo][more]
XP_008462023.16.1e-5495.80PREDICTED: uncharacterized protein LOC103500493 isoform X3 [Cucumis melo][more]
BLAST of CmUC02G028820 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CmUC02G028820 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6D41.3e-5496.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G031030 PE=4 SV=1[more]
A0A5A7UW103.0e-5495.80Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BZ823.0e-5495.80Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CFV93.0e-5495.80uncharacterized protein LOC103500493 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S4E4B43.0e-5495.80uncharacterized protein LOC103500493 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
BLAST of CmUC02G028820 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G04235.11.6e-2046.53unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..62
NoneNo IPR availablePANTHERPTHR35707OS06G0608100 PROTEINcoord: 1..119

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC02G028820.1CmUC02G028820.1mRNA