CmUC02G028200 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC02G028200
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Eukaryotic translation initiation factor 4C
Location	CmU531Chr02: 2276865 .. 2277813 (+)
RNA-Seq Expression	CmUC02G028200
Synteny	CmUC02G028200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCTTTAGTTGTGGTCATCGAGAGTACTCGTTGTACTTTCTACTTTCACACCCAATCTTTATTATGCAAAAATGTTGCAGTAACCAAAACTTTAAGTTATGTTGGGAGTGATTCTCACTCTTAAACCTCCTTTTTATTCCGTCAAAATTAATTTTGATGATATGGAAATTGCATTCAAAAGTGTAAAATTAAATATTATATTAATTTTTAAGAAAGTTGAGAGAAAATGATCTGTTGTGCTAGTTAAACCCCACGTGATCATATTTGCTGATTTGGTTGGTGGTTTTGTGCATACATGCTCATGCCCAAGTGTAGTCATGATAACTCATTAGTGTTGAACGGATCCTTTCCCCTTTTCGGATAATCTGTTTTGATAATTCATGATTAATTTAGATTTTGCTAGTGATCTTTTTTGCAAACACACTTTTACTTTCTAGCATAGCTTGTGAAGCTATGTTTCTGGTGGCTAATTTTCCATCATAATACTGATAGTATAATCTGCGATAATGCCAAAGAACAAGGGAAAGGGGGAAAGAATAGGAAGAGAGGTAAGAATGAGGCAGATGACGAGAAGCGTGAGCTTGTGTTTAAGGAAGATGGGCAGGAATATGCTCAAGTGCTACGAATGCTAGGTAATGGTCGATGTGAAGCGATGTGTATCGATGGGATTAAACGTGTCTGCCATATTCGAGGAAAAATGCACAAGAAAGTTTGGATTGCAGCTGGGGATATTATACTCGTTGGTCTTCATGACTATCAAGACGACAAAGCTGATGTGATTCTCAAATACATGTCTGATGAAGCCAGGCTTTTGAAAGCTTACAGTGAGTTACCCGAGAATACACGTCTTAATGAGGGTATCGTGGGGGGTATGGATGATGATGATGATGAAGGTGGTGGTGATGCTTATATTGAGTTTGAGGATGAAGACATTGATAAGATTTAG

mRNA sequence

ATGATCTTTAGTTGTGGTCATCGAGAGTACTCGTTTATAATCTGCGATAATGCCAAAGAACAAGGGAAAGGGGGAAAGAATAGGAAGAGAGGTAAGAATGAGGCAGATGACGAGAAGCGTGAGCTTGTGTTTAAGGAAGATGGGCAGGAATATGCTCAAGTGCTACGAATGCTAGGTAATGGTCGATGTGAAGCGATGTGTATCGATGGGATTAAACGTGTCTGCCATATTCGAGGAAAAATGCACAAGAAAGTTTGGATTGCAGCTGGGGATATTATACTCGTTGGTCTTCATGACTATCAAGACGACAAAGCTGATGTGATTCTCAAATACATGTCTGATGAAGCCAGGCTTTTGAAAGCTTACAGTGAGTTACCCGAGAATACACGTCTTAATGAGGGTATCGTGGGGGGTATGGATGATGATGATGATGAAGGTGGTGGTGATGCTTATATTGAGTTTGAGGATGAAGACATTGATAAGATTTAG

Coding sequence (CDS)

ATGATCTTTAGTTGTGGTCATCGAGAGTACTCGTTTATAATCTGCGATAATGCCAAAGAACAAGGGAAAGGGGGAAAGAATAGGAAGAGAGGTAAGAATGAGGCAGATGACGAGAAGCGTGAGCTTGTGTTTAAGGAAGATGGGCAGGAATATGCTCAAGTGCTACGAATGCTAGGTAATGGTCGATGTGAAGCGATGTGTATCGATGGGATTAAACGTGTCTGCCATATTCGAGGAAAAATGCACAAGAAAGTTTGGATTGCAGCTGGGGATATTATACTCGTTGGTCTTCATGACTATCAAGACGACAAAGCTGATGTGATTCTCAAATACATGTCTGATGAAGCCAGGCTTTTGAAAGCTTACAGTGAGTTACCCGAGAATACACGTCTTAATGAGGGTATCGTGGGGGGTATGGATGATGATGATGATGAAGGTGGTGGTGATGCTTATATTGAGTTTGAGGATGAAGACATTGATAAGATTTAG

Protein sequence

MIFSCGHREYSFIICDNAKEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIRGKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGGMDDDDDEGGGDAYIEFEDEDIDKI

Homology

[Close]

BLAST of CmUC02G028200 vs. NCBI nr
Match: XP_022135622.1 (eukaryotic translation initiation factor 1A-like [Momordica charantia])

HSP 1 Score: 270.0 bits (689), Expect = 1.3e-68
Identity = 136/144 (94.44%), Postives = 139/144 (96.53%), Query Frame = 0


Query: 19  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 78
           K +GKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDG KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIR 62

Query: 79  GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 138
           GKMHKKVWIAAGDIILVGL +YQDDKADVILKYM DEARLLKAYSELPENTRLNEGIVGG
Sbjct: 63  GKMHKKVWIAAGDIILVGLREYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIVGG 122

Query: 139 MDDDDDEGGGDAYIEFEDEDIDKI 163
           M DDDDEGGGDAYIEFEDEDIDKI
Sbjct: 123 M-DDDDEGGGDAYIEFEDEDIDKI 145

[Close]

BLAST of CmUC02G028200 vs. NCBI nr
Match: XP_004144524.1 (eukaryotic translation initiation factor 1A [Cucumis sativus] >XP_008455498.1 PREDICTED: eukaryotic translation initiation factor 1A-like [Cucumis melo] >XP_038888593.1 eukaryotic translation initiation factor 1A-like [Benincasa hispida] >KAA0059115.1 eukaryotic translation initiation factor 1A [Cucumis melo var. makuwa] >KGN43463.1 hypothetical protein Csa_020194 [Cucumis sativus] >TYK21620.1 eukaryotic translation initiation factor 1A [Cucumis melo var. makuwa])

HSP 1 Score: 270.0 bits (689), Expect = 1.3e-68
Identity = 136/144 (94.44%), Postives = 138/144 (95.83%), Query Frame = 0


Query: 19  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 78
           K +GKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDG KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIR 62

Query: 79  GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 138
           GKMHKKVWIAAGDIILVGL DYQDDKADVILKYM DEARLLKAY ELPENTRLNEGIVGG
Sbjct: 63  GKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIVGG 122

Query: 139 MDDDDDEGGGDAYIEFEDEDIDKI 163
           M DDDDEGGGDAYIEFEDEDIDKI
Sbjct: 123 M-DDDDEGGGDAYIEFEDEDIDKI 145

[Close]

BLAST of CmUC02G028200 vs. NCBI nr
Match: XP_022930658.1 (eukaryotic translation initiation factor 1A-like [Cucurbita moschata] >XP_022988995.1 eukaryotic translation initiation factor 1A-like [Cucurbita maxima] >XP_023529812.1 eukaryotic translation initiation factor 1A-like [Cucurbita pepo subsp. pepo] >KAG6589133.1 hypothetical protein SDJN03_17698, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 268.9 bits (686), Expect = 2.9e-68
Identity = 135/144 (93.75%), Postives = 138/144 (95.83%), Query Frame = 0


Query: 19  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 78
           K +GKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDG KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIR 62

Query: 79  GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 138
           GKMHKKVWIAAGDIILVGL DYQDDKADVILKYM DEARLLKAY ELPENTRLNEGIVGG
Sbjct: 63  GKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIVGG 122

Query: 139 MDDDDDEGGGDAYIEFEDEDIDKI 163
           M DDDDEGGGDAYIEFEDEDID+I
Sbjct: 123 M-DDDDEGGGDAYIEFEDEDIDRI 145

[Close]

BLAST of CmUC02G028200 vs. NCBI nr
Match: XP_008342156.1 (eukaryotic translation initiation factor 1A [Malus domestica] >XP_008353593.1 eukaryotic translation initiation factor 1A [Malus domestica] >XP_009365161.1 PREDICTED: eukaryotic translation initiation factor 1A [Pyrus x bretschneideri] >KAB2613516.1 eukaryotic translation initiation factor 1A [Pyrus ussuriensis x Pyrus communis] >TQE07716.1 hypothetical protein C1H46_006649 [Malus baccata] >RXH67942.1 hypothetical protein DVH24_028089 [Malus domestica] >RXH67944.1 hypothetical protein DVH24_028091 [Malus domestica] >TQE07718.1 hypothetical protein C1H46_006651 [Malus baccata])

HSP 1 Score: 261.9 bits (668), Expect = 3.6e-66
Identity = 130/144 (90.28%), Postives = 135/144 (93.75%), Query Frame = 0


Query: 19  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 78
           K +GKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDG KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIR 62

Query: 79  GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 138
           GKMHKKVWIAAGDIILVGL DYQDDKADVILKYM DEARLLKAY ELPENTRLNEGI GG
Sbjct: 63  GKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIAGG 122

Query: 139 MDDDDDEGGGDAYIEFEDEDIDKI 163
           +DD++ EGG D YIEFEDEDIDKI
Sbjct: 123 IDDEETEGGVDDYIEFEDEDIDKI 146

[Close]

BLAST of CmUC02G028200 vs. NCBI nr
Match: XP_022895864.1 (eukaryotic translation initiation factor 1A-like [Olea europaea var. sylvestris] >CAA2986154.1 eukaryotic translation initiation factor 1A [Olea europaea subsp. europaea])

HSP 1 Score: 261.9 bits (668), Expect = 3.6e-66
Identity = 131/144 (90.97%), Postives = 137/144 (95.14%), Query Frame = 0


Query: 19  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 78
           K +GKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRLCHIR 62

Query: 79  GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 138
           GKMHKKVWIAAGDIILVGL DYQDDKADVILKYM DEARLLKAY ELPE+TRLNEGI GG
Sbjct: 63  GKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGG 122

Query: 139 MDDDDDEGGGDAYIEFEDEDIDKI 163
           +D++DD GGGD YIEFEDEDIDKI
Sbjct: 123 LDEEDD-GGGDDYIEFEDEDIDKI 145

[Close]

BLAST of CmUC02G028200 vs. ExPASy Swiss-Prot
Match: P56331 (Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia OX=3882 PE=2 SV=2)

HSP 1 Score: 239.2 bits (609), Expect = 3.3e-62
Identity = 123/145 (84.83%), Postives = 131/145 (90.34%), Query Frame = 0


Query: 19  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 78
           K +GKGGKNRKRGKNEADD+KRELVFKEDGQEYAQVLRMLGNGRCEAMCIDG KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIR 62

Query: 79  GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGI-VG 138
           GKMHKKVWIAAGDIILVGL DYQDDKADVILK M DEARLLKAY ELP+NTRLNEGI  G
Sbjct: 63  GKMHKKVWIAAGDIILVGLRDYQDDKADVILKLMPDEARLLKAYGELPDNTRLNEGIGAG 122

Query: 139 GMDDDDDEGGGDAYIEFEDEDIDKI 163
           G+D++ D    + YIEFEDEDIDKI
Sbjct: 123 GLDEEMDT--ANDYIEFEDEDIDKI 145

[Close]

BLAST of CmUC02G028200 vs. ExPASy Swiss-Prot
Match: P47815 (Eukaryotic translation initiation factor 1A OS=Triticum aestivum OX=4565 PE=1 SV=2)

HSP 1 Score: 231.1 bits (588), Expect = 8.9e-60
Identity = 117/145 (80.69%), Postives = 129/145 (88.97%), Query Frame = 0


Query: 19  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 78
           K +GKGGKNRKRGKNEADD+KRELVFKEDGQEYAQV RMLGNGRCEA+C+DG KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCHIR 62

Query: 79  GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 138
           GKMHKKVWIAAGDI+LVGL DYQDDKADVILKYM+DEARLLKAY ELP+  RLNEG+   
Sbjct: 63  GKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMNDEARLLKAYGELPDTVRLNEGV--- 122

Query: 139 MDDDDDEGGGDA-YIEFEDEDIDKI 163
             D  +EG GD+ YI+FEDEDIDKI
Sbjct: 123 DVDGPEEGEGDSDYIQFEDEDIDKI 144

[Close]

BLAST of CmUC02G028200 vs. ExPASy Swiss-Prot
Match: P47813 (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens OX=9606 GN=EIF1AX PE=1 SV=2)

HSP 1 Score: 191.4 bits (485), Expect = 7.8e-48
Identity = 100/144 (69.44%), Postives = 115/144 (79.86%), Query Frame = 0


Query: 19  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 78
           K +GKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG+KR+CHIR
Sbjct: 3   KNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIR 62

Query: 79  GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 138
           GK+ KKVWI   DIILVGL DYQD+KADVILKY +DEAR LKAY ELPE+ ++NE    G
Sbjct: 63  GKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFG 122

Query: 139 MDDDDDEGGGDAYIEFEDEDIDKI 163
             DDD+    D  I  +DEDID I
Sbjct: 123 PGDDDEIQFDD--IGDDDEDIDDI 144

[Close]

BLAST of CmUC02G028200 vs. ExPASy Swiss-Prot
Match: Q8BMJ3 (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus OX=10090 GN=Eif1ax PE=2 SV=3)

HSP 1 Score: 191.4 bits (485), Expect = 7.8e-48
Identity = 100/144 (69.44%), Postives = 115/144 (79.86%), Query Frame = 0


Query: 19  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 78
           K +GKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG+KR+CHIR
Sbjct: 3   KNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIR 62

Query: 79  GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 138
           GK+ KKVWI   DIILVGL DYQD+KADVILKY +DEAR LKAY ELPE+ ++NE    G
Sbjct: 63  GKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFG 122

Query: 139 MDDDDDEGGGDAYIEFEDEDIDKI 163
             DDD+    D  I  +DEDID I
Sbjct: 123 PGDDDEIQFDD--IGDDDEDIDDI 144

[Close]

BLAST of CmUC02G028200 vs. ExPASy Swiss-Prot
Match: Q5RA42 (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii OX=9601 GN=EIF1AX PE=2 SV=3)

HSP 1 Score: 191.4 bits (485), Expect = 7.8e-48
Identity = 100/144 (69.44%), Postives = 115/144 (79.86%), Query Frame = 0


Query: 19  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 78
           K +GKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG+KR+CHIR
Sbjct: 3   KNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIR 62

Query: 79  GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 138
           GK+ KKVWI   DIILVGL DYQD+KADVILKY +DEAR LKAY ELPE+ ++NE    G
Sbjct: 63  GKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFG 122

Query: 139 MDDDDDEGGGDAYIEFEDEDIDKI 163
             DDD+    D  I  +DEDID I
Sbjct: 123 PGDDDEIQFDD--IGDDDEDIDDI 144

[Close]

BLAST of CmUC02G028200 vs. ExPASy TrEMBL
Match: A0A5A7UZV0 (Eukaryotic translation initiation factor 4C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold150G00180 PE=3 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 6.4e-69
Identity = 136/144 (94.44%), Postives = 138/144 (95.83%), Query Frame = 0


Query: 19  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 78
           K +GKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDG KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIR 62

Query: 79  GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 138
           GKMHKKVWIAAGDIILVGL DYQDDKADVILKYM DEARLLKAY ELPENTRLNEGIVGG
Sbjct: 63  GKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIVGG 122

Query: 139 MDDDDDEGGGDAYIEFEDEDIDKI 163
           M DDDDEGGGDAYIEFEDEDIDKI
Sbjct: 123 M-DDDDEGGGDAYIEFEDEDIDKI 145

[Close]

BLAST of CmUC02G028200 vs. ExPASy TrEMBL
Match: A0A0A0K1Y5 (Eukaryotic translation initiation factor 4C OS=Cucumis sativus OX=3659 GN=Csa_7G037660 PE=3 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 6.4e-69
Identity = 136/144 (94.44%), Postives = 138/144 (95.83%), Query Frame = 0


Query: 19  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 78
           K +GKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDG KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIR 62

Query: 79  GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 138
           GKMHKKVWIAAGDIILVGL DYQDDKADVILKYM DEARLLKAY ELPENTRLNEGIVGG
Sbjct: 63  GKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIVGG 122

Query: 139 MDDDDDEGGGDAYIEFEDEDIDKI 163
           M DDDDEGGGDAYIEFEDEDIDKI
Sbjct: 123 M-DDDDEGGGDAYIEFEDEDIDKI 145

[Close]

BLAST of CmUC02G028200 vs. ExPASy TrEMBL
Match: A0A6J1C384 (Eukaryotic translation initiation factor 4C OS=Momordica charantia OX=3673 GN=LOC111007531 PE=3 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 6.4e-69
Identity = 136/144 (94.44%), Postives = 139/144 (96.53%), Query Frame = 0


Query: 19  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 78
           K +GKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDG KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIR 62

Query: 79  GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 138
           GKMHKKVWIAAGDIILVGL +YQDDKADVILKYM DEARLLKAYSELPENTRLNEGIVGG
Sbjct: 63  GKMHKKVWIAAGDIILVGLREYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIVGG 122

Query: 139 MDDDDDEGGGDAYIEFEDEDIDKI 163
           M DDDDEGGGDAYIEFEDEDIDKI
Sbjct: 123 M-DDDDEGGGDAYIEFEDEDIDKI 145

[Close]

BLAST of CmUC02G028200 vs. ExPASy TrEMBL
Match: A0A1S3C1S5 (Eukaryotic translation initiation factor 4C OS=Cucumis melo OX=3656 GN=LOC103495650 PE=3 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 6.4e-69
Identity = 136/144 (94.44%), Postives = 138/144 (95.83%), Query Frame = 0


Query: 19  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 78
           K +GKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDG KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIR 62

Query: 79  GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 138
           GKMHKKVWIAAGDIILVGL DYQDDKADVILKYM DEARLLKAY ELPENTRLNEGIVGG
Sbjct: 63  GKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIVGG 122

Query: 139 MDDDDDEGGGDAYIEFEDEDIDKI 163
           M DDDDEGGGDAYIEFEDEDIDKI
Sbjct: 123 M-DDDDEGGGDAYIEFEDEDIDKI 145

[Close]

BLAST of CmUC02G028200 vs. ExPASy TrEMBL
Match: A0A6J1JL52 (Eukaryotic translation initiation factor 4C OS=Cucurbita maxima OX=3661 GN=LOC111486190 PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 1.4e-68
Identity = 135/144 (93.75%), Postives = 138/144 (95.83%), Query Frame = 0


Query: 19  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 78
           K +GKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDG KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIR 62

Query: 79  GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 138
           GKMHKKVWIAAGDIILVGL DYQDDKADVILKYM DEARLLKAY ELPENTRLNEGIVGG
Sbjct: 63  GKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIVGG 122

Query: 139 MDDDDDEGGGDAYIEFEDEDIDKI 163
           M DDDDEGGGDAYIEFEDEDID+I
Sbjct: 123 M-DDDDEGGGDAYIEFEDEDIDRI 145

[Close]

BLAST of CmUC02G028200 vs. TAIR 10
Match: AT5G35680.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 256.1 bits (653), Expect = 1.8e-68
Identity = 128/144 (88.89%), Postives = 135/144 (93.75%), Query Frame = 0


Query: 19  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 78
           K +GKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+ MCIDG+KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCHIR 62

Query: 79  GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 138
           GKMHKKVWIAAGDIILVGL DYQDDKADVILKYMSDEARLLKAY ELPENTRLNEGIVG 
Sbjct: 63  GKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIVGD 122

Query: 139 MDDDDDEGGGDAYIEFEDEDIDKI 163
           +DDDDD  G D YIEFEDEDID+I
Sbjct: 123 LDDDDDVVGED-YIEFEDEDIDRI 145

[Close]

BLAST of CmUC02G028200 vs. TAIR 10
Match: AT5G35680.2 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 256.1 bits (653), Expect = 1.8e-68
Identity = 128/144 (88.89%), Postives = 135/144 (93.75%), Query Frame = 0


Query: 19  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 78
           K +GKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+ MCIDG+KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCHIR 62

Query: 79  GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 138
           GKMHKKVWIAAGDIILVGL DYQDDKADVILKYMSDEARLLKAY ELPENTRLNEGIVG 
Sbjct: 63  GKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIVGD 122

Query: 139 MDDDDDEGGGDAYIEFEDEDIDKI 163
           +DDDDD  G D YIEFEDEDID+I
Sbjct: 123 LDDDDDVVGED-YIEFEDEDIDRI 145

[Close]

BLAST of CmUC02G028200 vs. TAIR 10
Match: AT2G04520.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 254.6 bits (649), Expect = 5.3e-68
Identity = 126/144 (87.50%), Postives = 134/144 (93.06%), Query Frame = 0


Query: 19  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 78
           K +GKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCIDG KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIR 62

Query: 79  GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 138
           GKMHKKVWIAAGDI+LVGL DYQDDKADVILKYMSDEARLLKAY ELPENTRLNEGIVG 
Sbjct: 63  GKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIVGD 122

Query: 139 MDDDDDEGGGDAYIEFEDEDIDKI 163
           ++DDDD    D Y+EFEDEDID+I
Sbjct: 123 LEDDDDNNDDD-YVEFEDEDIDRI 145

[Close]

BLAST of CmUC02G028200 vs. TAIR 10
Match: AT5G35680.3 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 239.6 bits (610), Expect = 1.8e-63
Identity = 115/126 (91.27%), Postives = 121/126 (96.03%), Query Frame = 0


Query: 19  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 78
           K +GKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+ MCIDG+KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCHIR 62

Query: 79  GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 138
           GKMHKKVWIAAGDIILVGL DYQDDKADVILKYMSDEARLLKAY ELPENTRLNEGIVG 
Sbjct: 63  GKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIVGD 122

Query: 139 MDDDDD 145
           +DDDDD
Sbjct: 123 LDDDDD 128

The following BLAST results are available for this feature:

BLAST of CmUC02G028200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135622.1	1.3e-68	94.44	eukaryotic translation initiation factor 1A-like [Momordica charantia]	[more]
XP_004144524.1	1.3e-68	94.44	eukaryotic translation initiation factor 1A [Cucumis sativus] >XP_008455498.1 PR...	[more]
XP_022930658.1	2.9e-68	93.75	eukaryotic translation initiation factor 1A-like [Cucurbita moschata] >XP_022988...	[more]
XP_008342156.1	3.6e-66	90.28	eukaryotic translation initiation factor 1A [Malus domestica] >XP_008353593.1 eu...	[more]
XP_022895864.1	3.6e-66	90.97	eukaryotic translation initiation factor 1A-like [Olea europaea var. sylvestris]...	[more]

BLAST of CmUC02G028200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P56331	3.3e-62	84.83	Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia OX=3882 PE=...	[more]
P47815	8.9e-60	80.69	Eukaryotic translation initiation factor 1A OS=Triticum aestivum OX=4565 PE=1 SV...	[more]
P47813	7.8e-48	69.44	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens OX=96...	[more]
Q8BMJ3	7.8e-48	69.44	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus OX=10...	[more]
Q5RA42	7.8e-48	69.44	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii OX=96...	[more]

BLAST of CmUC02G028200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UZV0	6.4e-69	94.44	Eukaryotic translation initiation factor 4C OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A0A0K1Y5	6.4e-69	94.44	Eukaryotic translation initiation factor 4C OS=Cucumis sativus OX=3659 GN=Csa_7G...	[more]
A0A6J1C384	6.4e-69	94.44	Eukaryotic translation initiation factor 4C OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A1S3C1S5	6.4e-69	94.44	Eukaryotic translation initiation factor 4C OS=Cucumis melo OX=3656 GN=LOC103495...	[more]
A0A6J1JL52	1.4e-68	93.75	Eukaryotic translation initiation factor 4C OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

BLAST of CmUC02G028200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G35680.1	1.8e-68	88.89	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G35680.2	1.8e-68	88.89	Nucleic acid-binding, OB-fold-like protein	[more]
AT2G04520.1	5.3e-68	87.50	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G35680.3	1.8e-63	91.27	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001253	Translation initiation factor 1A (eIF-1A)	SMART	SM00652	eIF1neu4	coord: 44..126 e-value: 3.8E-45 score: 166.0
IPR001253	Translation initiation factor 1A (eIF-1A)	TIGRFAM	TIGR00523	TIGR00523	coord: 30..126 e-value: 7.9E-33 score: 110.4
IPR001253	Translation initiation factor 1A (eIF-1A)	PANTHER	PTHR21668	EIF-1A	coord: 19..162
IPR001253	Translation initiation factor 1A (eIF-1A)	HAMAP	MF_00216	aIF_1A	coord: 32..126 score: 17.827541
IPR001253	Translation initiation factor 1A (eIF-1A)	CDD	cd05793	S1_IF1A	coord: 49..125 e-value: 3.70349E-39 score: 125.714
None	No IPR available	GENE3D	2.40.50.140		coord: 18..162 e-value: 1.1E-52 score: 179.3
None	No IPR available	PANTHER	PTHR21668:SF18	EUKARYOTIC TRANSLATION INITIATION FACTOR 1A-LIKE	coord: 19..162
IPR006196	RNA-binding domain, S1, IF1 type	PFAM	PF01176	eIF-1a	coord: 48..109 e-value: 5.7E-21 score: 74.1
IPR006196	RNA-binding domain, S1, IF1 type	PROSITE	PS50832	S1_IF1_TYPE	coord: 38..112 score: 30.697508
IPR018104	Translation initiation factor 1A (eIF-1A), conserved site	PROSITE	PS01262	IF1A	coord: 57..79
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 20..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC02G028200.1	CmUC02G028200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003723	RNA binding