CmUC02G026350 (gene) Watermelon (USVL531) v1

Overview
NameCmUC02G026350
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionRibosome assembly factor mrt4
LocationCmU531Chr02: 628367 .. 629888 (-)
RNA-Seq ExpressionCmUC02G026350
SyntenyCmUC02G026350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTAAGTCGAAGCGTGATAGACCAGGTCCGTTTTGATCTATTTTTTGCTCATATCTGTGAATCTGTCGCGTTATTTTGTGTTTTTGTTGGTCTGTTCTATCTGCCTTGTTTTCCATGCTAAAAGAAATAGATTTTAGCTCATCTGGTTATTGTGCTGTAATATGAAAATCTGTTACAGGAACCTCACACAGTACAAGGAGGGATTGGTTAAGCTATATTACGGGAAATAGTCACTAGAAAAGTTGTAGTTGTAAGATAGAAGTTCCTTTTTTTTTTTTTTTTTTTTTGTTGGGTGTATTCTTGCCTCTTATGAGGGGAACTTCATTCTGAAGTGCTTAGTTCACTAGGTTGGCTGCAAGTCGACCAGCATTTGTGTTGTTACATTGCATCATGTTATAGGACTTGAATGTAAAGATATATGAGGCTCTTTAATATGCACACAAAACCAGTTCAGCACCATGACACTGTCAAGTGCCTTATATTTAGTTCAGTATACCTTTTCTTATAGCTATTTGAGCTGCATATTAAAGAAATCAAAATAGGATAGATTCCATAAATATTAGCATCTTTCTTGCTCGATTTGAGCTGCATATTATTCTTCTAAGGCTCTTCAAAGTTCTATTGAAGTTATTTGATGTGTTACTTGAGCAAGTACTTTAAGAGTCAGGAATTTGTAGAGGCTTCCTAATAGGAGTAGGTCATTTGCTACCCACTCCTTGAACTAAGGGTTATTACAAATCTGATGCTCTGTGAGCCTCAAGCTTGCTTTCCTTGATGGTAGGCATGGCTTTAGTGTGCCCTAGAAGATAGTTTGTCATCAAGTTTGAGGGAAAAATCAATTTAGTATAGGTGTTGCCAGGAGGTGGCTGAGGTGAAAGTTTCTGTGTATGTACAAAATGTAGAGTTGCGTACAACATATGGAACATGATGTCTAAAGTTACAGCGTTTACTGCGTGAGACTAATTTCTAGAAAAATAAATTTAGTCGGCTGATTCATGTTGTTAAACAGAATCCAAATAACAGTAACCTTAATAGAATTTAATGACTTGCTTTAAGAGTAGAAAGATGCTAAAATTTGTTCTTTTAGTTCAAGGTTCTTGTTGAATATGGGTTAACGGGTTAGTTATATTATGGGTTAATTTTTTTGAGGCAGTTTAAGAAGTTAAATGACTTGTGGTGGTAGTATTCAGTGTCAAACTTGTGTGGTTTTTAACTTAAAAGAAAGAGGAAAAATATGAACTTTTAGTCCATTGCAGATTAGTGTCTTGACTAATTGTTCCGTGGGATAAATGCAGTTACTTTATCAAAAACCAAGAAGAAAGGAAGGGAACACAAGAAATCAATGGTGGATCTGATCAGGCAGGCTGTGGAAAATTACAACTCAATTTTTGTTTTCACTGTTGAGAACATGAGAAACCTCAAGTTTAAGGAACTCAGGGAGCAGCTGAAGTCATCTAGCAGGCAAGTTGTATTTCCTGACTTCTGTATTATTTATTTGCTACATCATTTCAAATATTGA

mRNA sequence

ATGCCTAAGTCGAAGCGTGATAGACCAGGTCCGAACCTCACACAGTACAAGGAGGGATTGTTCAAGGTTCTTGTTGAATATGGGTTAACGGTTACTTTATCAAAAACCAAGAAGAAAGGAAGGGAACACAAGAAATCAATGGTGGATCTGATCAGGCAGGCTGTGGAAAATTACAACTCAATTTTTGTTTTCACTGTTGAGAACATGAGAAACCTCAAGTTTAAGGAACTCAGGGAGCAGCTGAAGTCATCTAGCAGGCAAGTTGTATTTCCTGACTTCTGTATTATTTATTTGCTACATCATTTCAAATATTGA

Coding sequence (CDS)

ATGCCTAAGTCGAAGCGTGATAGACCAGGTCCGAACCTCACACAGTACAAGGAGGGATTGTTCAAGGTTCTTGTTGAATATGGGTTAACGGTTACTTTATCAAAAACCAAGAAGAAAGGAAGGGAACACAAGAAATCAATGGTGGATCTGATCAGGCAGGCTGTGGAAAATTACAACTCAATTTTTGTTTTCACTGTTGAGAACATGAGAAACCTCAAGTTTAAGGAACTCAGGGAGCAGCTGAAGTCATCTAGCAGGCAAGTTGTATTTCCTGACTTCTGTATTATTTATTTGCTACATCATTTCAAATATTGA

Protein sequence

MPKSKRDRPGPNLTQYKEGLFKVLVEYGLTVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREQLKSSSRQVVFPDFCIIYLLHHFKY
Homology
BLAST of CmUC02G026350 vs. NCBI nr
Match: XP_022933518.1 (mRNA turnover protein 4 homolog [Cucurbita moschata] >KAG6588508.1 mRNA turnover protein 4-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 114.4 bits (285), Expect = 5.9e-22
Identity = 64/86 (74.42%), Postives = 65/86 (75.58%), Query Frame = 0

Query: 1  MPKSKRDRPGPNLTQYKEGLFKVLVEYGLTVTLSKTKKKGREHKKSMVDLIRQAVENYNS 60
          MPKSKRDRP                     VTLSKTKKKGREHKKSMVDLIRQAVENYNS
Sbjct: 1  MPKSKRDRP---------------------VTLSKTKKKGREHKKSMVDLIRQAVENYNS 60

Query: 61 IFVFTVENMRNLKFKELREQLKSSSR 87
          I+VFTVENMRNLKFKELREQLKSSSR
Sbjct: 61 IYVFTVENMRNLKFKELREQLKSSSR 65

BLAST of CmUC02G026350 vs. NCBI nr
Match: XP_022969955.1 (mRNA turnover protein 4 homolog [Cucurbita maxima])

HSP 1 Score: 114.4 bits (285), Expect = 5.9e-22
Identity = 64/86 (74.42%), Postives = 65/86 (75.58%), Query Frame = 0

Query: 1  MPKSKRDRPGPNLTQYKEGLFKVLVEYGLTVTLSKTKKKGREHKKSMVDLIRQAVENYNS 60
          MPKSKRDRP                     VTLSKTKKKGREHKKSMVDLIRQAVENYNS
Sbjct: 1  MPKSKRDRP---------------------VTLSKTKKKGREHKKSMVDLIRQAVENYNS 60

Query: 61 IFVFTVENMRNLKFKELREQLKSSSR 87
          I+VFTVENMRNLKFKELREQLKSSSR
Sbjct: 61 IYVFTVENMRNLKFKELREQLKSSSR 65

BLAST of CmUC02G026350 vs. NCBI nr
Match: XP_023529350.1 (mRNA turnover protein 4 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 114.4 bits (285), Expect = 5.9e-22
Identity = 64/86 (74.42%), Postives = 65/86 (75.58%), Query Frame = 0

Query: 1  MPKSKRDRPGPNLTQYKEGLFKVLVEYGLTVTLSKTKKKGREHKKSMVDLIRQAVENYNS 60
          MPKSKRDRP                     VTLSKTKKKGREHKKSMVDLIRQAVENYNS
Sbjct: 1  MPKSKRDRP---------------------VTLSKTKKKGREHKKSMVDLIRQAVENYNS 60

Query: 61 IFVFTVENMRNLKFKELREQLKSSSR 87
          I+VFTVENMRNLKFKELREQLKSSSR
Sbjct: 61 IYVFTVENMRNLKFKELREQLKSSSR 65

BLAST of CmUC02G026350 vs. NCBI nr
Match: XP_038902849.1 (mRNA turnover protein 4 homolog [Benincasa hispida])

HSP 1 Score: 114.0 bits (284), Expect = 7.8e-22
Identity = 64/86 (74.42%), Postives = 65/86 (75.58%), Query Frame = 0

Query: 1  MPKSKRDRPGPNLTQYKEGLFKVLVEYGLTVTLSKTKKKGREHKKSMVDLIRQAVENYNS 60
          MPKSKRDRP                     VTLSKTKKKGREHKKSMV+LIRQAVENYNS
Sbjct: 1  MPKSKRDRP---------------------VTLSKTKKKGREHKKSMVELIRQAVENYNS 60

Query: 61 IFVFTVENMRNLKFKELREQLKSSSR 87
          IFVFTVENMRNLKFKELREQLKSSSR
Sbjct: 61 IFVFTVENMRNLKFKELREQLKSSSR 65

BLAST of CmUC02G026350 vs. NCBI nr
Match: XP_022157470.1 (mRNA turnover protein 4 homolog [Momordica charantia])

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-21
Identity = 63/86 (73.26%), Postives = 65/86 (75.58%), Query Frame = 0

Query: 1  MPKSKRDRPGPNLTQYKEGLFKVLVEYGLTVTLSKTKKKGREHKKSMVDLIRQAVENYNS 60
          MPKSKRDRP                     VTLSKTKKKGREHKKSMVDLIRQAVENYNS
Sbjct: 1  MPKSKRDRP---------------------VTLSKTKKKGREHKKSMVDLIRQAVENYNS 60

Query: 61 IFVFTVENMRNLKFKELREQLKSSSR 87
          I+VFTVENMRNLKFKELREQLKS+SR
Sbjct: 61 IYVFTVENMRNLKFKELREQLKSTSR 65

BLAST of CmUC02G026350 vs. ExPASy Swiss-Prot
Match: A4FV84 (mRNA turnover protein 4 homolog OS=Bos taurus OX=9913 GN=MRTO4 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 4.3e-07
Identity = 31/84 (36.90%), Postives = 47/84 (55.95%), Query Frame = 0

Query: 1  MPKSKRDRPGPNLTQYKEGLFKVLVEYGLTVTLSKTKKKGREHKKSMVDLIRQAVENYNS 60
          MPKSKRD+                      V+L+KT KKG E K+++++ +R+ V+ Y  
Sbjct: 1  MPKSKRDK---------------------KVSLTKTAKKGLELKQNLIEELRKCVDTYKY 60

Query: 61 IFVFTVENMRNLKFKELREQLKSS 85
          +F+F+V NMRN K K++R   K S
Sbjct: 61 LFIFSVANMRNSKLKDIRNAWKHS 63

BLAST of CmUC02G026350 vs. ExPASy Swiss-Prot
Match: Q9UKD2 (mRNA turnover protein 4 homolog OS=Homo sapiens OX=9606 GN=MRTO4 PE=1 SV=2)

HSP 1 Score: 55.5 bits (132), Expect = 4.3e-07
Identity = 31/84 (36.90%), Postives = 47/84 (55.95%), Query Frame = 0

Query: 1  MPKSKRDRPGPNLTQYKEGLFKVLVEYGLTVTLSKTKKKGREHKKSMVDLIRQAVENYNS 60
          MPKSKRD+                      V+L+KT KKG E K+++++ +R+ V+ Y  
Sbjct: 1  MPKSKRDK---------------------KVSLTKTAKKGLELKQNLIEELRKCVDTYKY 60

Query: 61 IFVFTVENMRNLKFKELREQLKSS 85
          +F+F+V NMRN K K++R   K S
Sbjct: 61 LFIFSVANMRNSKLKDIRNAWKHS 63

BLAST of CmUC02G026350 vs. ExPASy Swiss-Prot
Match: Q9D0I8 (mRNA turnover protein 4 homolog OS=Mus musculus OX=10090 GN=Mrto4 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 4.3e-07
Identity = 31/84 (36.90%), Postives = 47/84 (55.95%), Query Frame = 0

Query: 1  MPKSKRDRPGPNLTQYKEGLFKVLVEYGLTVTLSKTKKKGREHKKSMVDLIRQAVENYNS 60
          MPKSKRD+                      V+L+KT KKG E K+++++ +R+ V+ Y  
Sbjct: 1  MPKSKRDK---------------------KVSLTKTAKKGLELKQNLIEELRKCVDTYKY 60

Query: 61 IFVFTVENMRNLKFKELREQLKSS 85
          +F+F+V NMRN K K++R   K S
Sbjct: 61 LFIFSVANMRNSKLKDIRNAWKHS 63

BLAST of CmUC02G026350 vs. ExPASy Swiss-Prot
Match: Q7S302 (Ribosome assembly factor mrt4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=mrt4 PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.0e-04
Identity = 20/49 (40.82%), Postives = 34/49 (69.39%), Query Frame = 0

Query: 33 LSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREQL 82
          L++  KK RE K+ + + IR+ + NY   FVF+++NMRN   K++R++L
Sbjct: 12 LTQVTKKNREQKEKLFENIRECIPNYQHCFVFSIDNMRNNYLKDVRKEL 60

BLAST of CmUC02G026350 vs. ExPASy Swiss-Prot
Match: Q6FJ04 (Ribosome assembly factor mrt4 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) OX=284593 GN=MRT4 PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.4e-04
Identity = 20/49 (40.82%), Postives = 36/49 (73.47%), Query Frame = 0

Query: 31 VTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELRE 80
          VTL++T KKGRE+K+ + D +R+A++ Y  +FV  ++++R    +E+RE
Sbjct: 10 VTLAQTDKKGRENKERIFDEVREALDTYKYVFVLQLDDVRTPVLQEIRE 58

BLAST of CmUC02G026350 vs. ExPASy TrEMBL
Match: A0A6J1I1E2 (Ribosome assembly factor mrt4 OS=Cucurbita maxima OX=3661 GN=LOC111468997 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.9e-22
Identity = 64/86 (74.42%), Postives = 65/86 (75.58%), Query Frame = 0

Query: 1  MPKSKRDRPGPNLTQYKEGLFKVLVEYGLTVTLSKTKKKGREHKKSMVDLIRQAVENYNS 60
          MPKSKRDRP                     VTLSKTKKKGREHKKSMVDLIRQAVENYNS
Sbjct: 1  MPKSKRDRP---------------------VTLSKTKKKGREHKKSMVDLIRQAVENYNS 60

Query: 61 IFVFTVENMRNLKFKELREQLKSSSR 87
          I+VFTVENMRNLKFKELREQLKSSSR
Sbjct: 61 IYVFTVENMRNLKFKELREQLKSSSR 65

BLAST of CmUC02G026350 vs. ExPASy TrEMBL
Match: A0A6J1F4Z2 (Ribosome assembly factor mrt4 OS=Cucurbita moschata OX=3662 GN=LOC111440919 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.9e-22
Identity = 64/86 (74.42%), Postives = 65/86 (75.58%), Query Frame = 0

Query: 1  MPKSKRDRPGPNLTQYKEGLFKVLVEYGLTVTLSKTKKKGREHKKSMVDLIRQAVENYNS 60
          MPKSKRDRP                     VTLSKTKKKGREHKKSMVDLIRQAVENYNS
Sbjct: 1  MPKSKRDRP---------------------VTLSKTKKKGREHKKSMVDLIRQAVENYNS 60

Query: 61 IFVFTVENMRNLKFKELREQLKSSSR 87
          I+VFTVENMRNLKFKELREQLKSSSR
Sbjct: 61 IYVFTVENMRNLKFKELREQLKSSSR 65

BLAST of CmUC02G026350 vs. ExPASy TrEMBL
Match: A0A6J1DT71 (Ribosome assembly factor mrt4 OS=Momordica charantia OX=3673 GN=LOC111024162 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 6.4e-22
Identity = 63/86 (73.26%), Postives = 65/86 (75.58%), Query Frame = 0

Query: 1  MPKSKRDRPGPNLTQYKEGLFKVLVEYGLTVTLSKTKKKGREHKKSMVDLIRQAVENYNS 60
          MPKSKRDRP                     VTLSKTKKKGREHKKSMVDLIRQAVENYNS
Sbjct: 1  MPKSKRDRP---------------------VTLSKTKKKGREHKKSMVDLIRQAVENYNS 60

Query: 61 IFVFTVENMRNLKFKELREQLKSSSR 87
          I+VFTVENMRNLKFKELREQLKS+SR
Sbjct: 61 IYVFTVENMRNLKFKELREQLKSTSR 65

BLAST of CmUC02G026350 vs. ExPASy TrEMBL
Match: A0A0A0KNA7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G453720 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 6.6e-19
Identity = 49/62 (79.03%), Postives = 57/62 (91.94%), Query Frame = 0

Query: 35 KTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREQLKSSSRQVVFPDFC 94
          K ++KGR+HKKSMV+ IRQ VENYNS+FVFTVENMRNLKFKELREQLKS+SRQV+  +FC
Sbjct: 13 KQRRKGRDHKKSMVESIRQGVENYNSVFVFTVENMRNLKFKELREQLKSASRQVLLSEFC 72

Query: 95 II 97
          II
Sbjct: 73 II 74

BLAST of CmUC02G026350 vs. ExPASy TrEMBL
Match: A0A4S4DS10 (Ribosome assembly factor mrt4 OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_022600 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 6.2e-17
Identity = 51/92 (55.43%), Postives = 65/92 (70.65%), Query Frame = 0

Query: 1  MPKSKRDRPGPNLTQYKEGLFKVLV------EYGLTVTLSKTKKKGREHKKSMVDLIRQA 60
          MPKSKRDRPG + +         L       + G  +TLSKTKKKGR HK+S+V+ IR+ 
Sbjct: 1  MPKSKRDRPGLSSSPRSFNFIHCLAAEKPDGKRGSNLTLSKTKKKGRGHKESIVNSIREE 60

Query: 61 VENYNSIFVFTVENMRNLKFKELREQLKSSSR 87
          +E YNS++VF+ ENMRNLKFKE R++LKSSSR
Sbjct: 61 IEKYNSVYVFSFENMRNLKFKEFRDKLKSSSR 92

BLAST of CmUC02G026350 vs. TAIR 10
Match: AT1G25260.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 83.2 bits (204), Expect = 1.4e-16
Identity = 44/86 (51.16%), Postives = 57/86 (66.28%), Query Frame = 0

Query: 1  MPKSKRDRPGPNLTQYKEGLFKVLVEYGLTVTLSKTKKKGREHKKSMVDLIRQAVENYNS 60
          MPKSKRDRP                     VTLSKTKKKGREHK+ +V+ IR+AVE Y+S
Sbjct: 1  MPKSKRDRP---------------------VTLSKTKKKGREHKECIVNGIREAVEKYSS 60

Query: 61 IFVFTVENMRNLKFKELREQLKSSSR 87
          ++VF+ ENMRN+KFKE R+Q + + +
Sbjct: 61 VYVFSFENMRNIKFKEFRQQFRHNGK 65

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022933518.15.9e-2274.42mRNA turnover protein 4 homolog [Cucurbita moschata] >KAG6588508.1 mRNA turnover... [more]
XP_022969955.15.9e-2274.42mRNA turnover protein 4 homolog [Cucurbita maxima][more]
XP_023529350.15.9e-2274.42mRNA turnover protein 4 homolog [Cucurbita pepo subsp. pepo][more]
XP_038902849.17.8e-2274.42mRNA turnover protein 4 homolog [Benincasa hispida][more]
XP_022157470.11.3e-2173.26mRNA turnover protein 4 homolog [Momordica charantia][more]
Match NameE-valueIdentityDescription
A4FV844.3e-0736.90mRNA turnover protein 4 homolog OS=Bos taurus OX=9913 GN=MRTO4 PE=2 SV=1[more]
Q9UKD24.3e-0736.90mRNA turnover protein 4 homolog OS=Homo sapiens OX=9606 GN=MRTO4 PE=1 SV=2[more]
Q9D0I84.3e-0736.90mRNA turnover protein 4 homolog OS=Mus musculus OX=10090 GN=Mrto4 PE=1 SV=1[more]
Q7S3022.0e-0440.82Ribosome assembly factor mrt4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-... [more]
Q6FJ043.4e-0440.82Ribosome assembly factor mrt4 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / ... [more]
Match NameE-valueIdentityDescription
A0A6J1I1E22.9e-2274.42Ribosome assembly factor mrt4 OS=Cucurbita maxima OX=3661 GN=LOC111468997 PE=3 S... [more]
A0A6J1F4Z22.9e-2274.42Ribosome assembly factor mrt4 OS=Cucurbita moschata OX=3662 GN=LOC111440919 PE=3... [more]
A0A6J1DT716.4e-2273.26Ribosome assembly factor mrt4 OS=Momordica charantia OX=3673 GN=LOC111024162 PE=... [more]
A0A0A0KNA76.6e-1979.03Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G453720 PE=3 SV=1[more]
A0A4S4DS106.2e-1755.43Ribosome assembly factor mrt4 OS=Camellia sinensis var. sinensis OX=542762 GN=TE... [more]
Match NameE-valueIdentityDescription
AT1G25260.11.4e-1651.16Ribosomal protein L10 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR043141Ribosomal protein L10-like domain superfamilyGENE3D3.30.70.1730coord: 30..91
e-value: 4.5E-9
score: 38.3
IPR043141Ribosomal protein L10-like domain superfamilySUPERFAMILY160369Ribosomal protein L10-likecoord: 41..84
IPR001790Ribosomal protein L10PPFAMPF00466Ribosomal_L10coord: 40..89
e-value: 4.5E-9
score: 36.3
NoneNo IPR availablePANTHERPTHR45841MRNA TURNOVER PROTEIN 4 MRTO4coord: 30..87
NoneNo IPR availablePANTHERPTHR45841:SF4RIBOSOME ASSEMBLY FACTOR MRT4coord: 30..87

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC02G026350.1CmUC02G026350.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
cellular_component GO:0005840 ribosome