CmUC02G026180 (gene) Watermelon (USVL531) v1

Overview
NameCmUC02G026180
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionUnknown protein
LocationCmU531Chr02: 506022 .. 506538 (-)
RNA-Seq ExpressionCmUC02G026180
SyntenyCmUC02G026180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGGTTGTCTCCTCGCCGTTGTTCAACACACTCTCCGTGTAAGTAATTGACTCGCTATTTGGGTTCTTTGTCCTAAATTCGTTTATGTAATCTTTGTCCAATTTCCTCTCTCTGCTAATTTCTGTTTCCATTGCTGAAACGATCGTTGCGTTCTCTTCTGGTTTTGGTTCAATTATTTCTTGTGCAGTGATGAATCGCATTACGGTTAAGCTCACTCCTAGATATTTTGACATTCTCCATACGTATGATAGGGCTTCTCTATCATCTCGTCCACCAAAGCACAACGGAGTTGCCTTGTTTGATGCGACTCGATTCAAGCCGTTTAAGCCTCGATGGACTAGGATTCCAACGGAGCAAGGGGCATTGGCTAACACATTTTGGTTAACCAATCTAAATGCTGGATTTGTGGCTTCCATTCCTCCATCGACTGTTTTGCTTATGGAATGGGATGATTATGAAGGCAACCGTTTATCCTCGGCTAAATTGCATATGTCTTCGTGCATTGTGGAGTAA

mRNA sequence

ATGCTTGGTTGTCTCCTCGCCGTTGTTCAACACACTCTCCGTGTAATGATGAATCGCATTACGGTTAAGCTCACTCCTAGATATTTTGACATTCTCCATACGTATGATAGGGCTTCTCTATCATCTCGTCCACCAAAGCACAACGGAGTTGCCTTGTTTGATGCGACTCGATTCAAGCCGTTTAAGCCTCGATGGACTAGGATTCCAACGGAGCAAGGGGCATTGGCTAACACATTTTGGTTAACCAATCTAAATGCTGGATTTGTGGCTTCCATTCCTCCATCGACTGTTTTGCTTATGGAATGGGATGATTATGAAGGCAACCGTTTATCCTCGGCTAAATTGCATATGTCTTCGTGCATTGTGGAGTAA

Coding sequence (CDS)

ATGCTTGGTTGTCTCCTCGCCGTTGTTCAACACACTCTCCGTGTAATGATGAATCGCATTACGGTTAAGCTCACTCCTAGATATTTTGACATTCTCCATACGTATGATAGGGCTTCTCTATCATCTCGTCCACCAAAGCACAACGGAGTTGCCTTGTTTGATGCGACTCGATTCAAGCCGTTTAAGCCTCGATGGACTAGGATTCCAACGGAGCAAGGGGCATTGGCTAACACATTTTGGTTAACCAATCTAAATGCTGGATTTGTGGCTTCCATTCCTCCATCGACTGTTTTGCTTATGGAATGGGATGATTATGAAGGCAACCGTTTATCCTCGGCTAAATTGCATATGTCTTCGTGCATTGTGGAGTAA

Protein sequence

MLGCLLAVVQHTLRVMMNRITVKLTPRYFDILHTYDRASLSSRPPKHNGVALFDATRFKPFKPRWTRIPTEQGALANTFWLTNLNAGFVASIPPSTVLLMEWDDYEGNRLSSAKLHMSSCIVE
Homology
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BLAST of CmUC02G026180 vs. ExPASy TrEMBL
Match: J3NFD9 (Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.2e-04
Identity = 35/95 (36.84%), Postives = 48/95 (50.53%), Query Frame = 0 

Query: 29  FDILHTYDRASLSSRPPKHNGVALFDATRFKPF-KPRWTRIPTEQGALANTFWLTNLNAG 88
           FD+      AS SS PP +       A     F +PR TR+PTE GA  +TFW T+ +  
Sbjct: 192 FDMNDASVSASRSSAPPMNTTTTPCGAPSACCFPRPRSTRMPTEHGASCSTFWFTSRSPR 251

Query: 89  FVASIPPSTV-LLMEWDDYEGNRLSSAKLHMSSCI 122
           + AS+ PS + LL           SSA++ MS C+
Sbjct: 252 WPASMAPSALCLLWNGSSTSAAMASSAQMQMSLCM 286

The following BLAST results are available for this feature:
BLAST of CmUC02G026180 vs.
Match NameE-valueIdentityDescription
BLAST of CmUC02G026180 vs.
Match NameE-valueIdentityDescription
BLAST of CmUC02G026180 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
J3NFD93.2e-0436.84Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1[more]
BLAST of CmUC02G026180 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC02G026180.1CmUC02G026180.1mRNA