CmUC01G024840 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC01G024840
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Germin-like protein
Location	CmU531Chr01: 36273111 .. 36274415 (-)
RNA-Seq Expression	CmUC01G024840
Synteny	CmUC01G024840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCAGCCAAGCTGCCCCCACCCAAGTTTCAACCCACACTCTCTTTACTCACAAAACCAAGTTTCAACTTCAAAATCTTTATGTACATACATATGCCTTCTCAACTTCTTTTTTCACCTCTCTTTCTCCCTTCTTTATCCATGGCTTTGGCCCCTAACCTTAGTCCATTTCAACACTTTTCGATCGCAGATCCAAATAGCAATCATAAGATATCAAACTTATAAGCACTACTTCCACTTTTTTTTTTTTATTTCTATTTCTAACTTTTCAAAATCATTATTAAGCCAATGTTAATTTTGTTTACAATTAAATTAGACTTAGTTATCTAGATTGCTATAGCTTTTTAAATAATTGATGACAACAATACTTTTTAGAAAAAATAGATGTGTTATGACGCAAATTAATGTTTGGTAAAATTTTAGCTTTTAAGACTTGAAAAAGTTATTTATAGCATTTCATAAGTAAATATTAAATTATTGTGTTTTAAATATAATAACTAAAACAAACTAATATTAAAATTGGGTTGTTTTCAAATATAGCAAAATGAACGAAAATATTTACAAATATAGACAAATTACACTGTTTATCAGTGATAGATCACGATAGATGTCTGTCGCTCAAGTAATAAAATTATGTCTGCTGAATATCACTGATAGATAGTGAAATTTTTATGTATTTGTAAATAGTTTGATATTTTTTCCATTTATAATAATTTTTCATTAAAATTTGTATTTTTTAAAAATAATTATTTAAAAAATATATCTTGTTGCTCTAAATTATTAATGGTTAGATATTAAGAGAAACAACTTTAATGTGAGAAAGACAATAATATATAAAATAAATATTAATTTTGAAAGATACAATTAAAAATTTATTAAAAAGTTAAATCTGATTATATGAGAATCTTAAAGTTGGCTTAGAATCCTAGTTTATACTGATATGGATTAGAGGTTTTATTTTTTACGGTGAAAGTGAACGGTCTTGTTTGCAAGATCCGAACTTGGTCGAAGCTAAGGATTTCTTCTTCAGTGGGTTGCATGTGGCCAAAGACACCAACACAACCACTTGCTCTTAAGTAACTCTAGTGACCCTGGTGCAAATCCCAGGGCTCAACACTCTTGGCATCTCCTTGGGTCACATTGACTTCGCCCCGCGAGCATCACTACTCCCCACAGGCACCCACTTGCCACCGAAATCTTGACAGTCCTTGAAGGAAAGCTCTTGGCTGGCTTCATCATTAACAATCTTGAGAACCGTTTGATCACCAAGACATTGAACAAGGGCAATTCCCAAAAGATTTGA

mRNA sequence

ATGAAGCAGCCAAGCTGCCCCCACCCAAGTTTCAACCCACACTCTCTTTACTCACAAAACCAATGGGTTGCATGTGGCCAAAGACACCAACACAACCACTTGCTCTTAAGTAACTCTAGTGACCCTGGTGCAAATCCCAGGGCTCAACACTCTTGGCATCTCCTTGGGCACCCACTTGCCACCGAAATCTTGACAGTCCTTGAAGGAAAGCTCTTGGCTGGCTTCATCATTAACAATCTTGAGAACCGTTTGATCACCAAGACATTGAACAAGGGCAATTCCCAAAAGATTTGA

Coding sequence (CDS)

ATGAAGCAGCCAAGCTGCCCCCACCCAAGTTTCAACCCACACTCTCTTTACTCACAAAACCAATGGGTTGCATGTGGCCAAAGACACCAACACAACCACTTGCTCTTAAGTAACTCTAGTGACCCTGGTGCAAATCCCAGGGCTCAACACTCTTGGCATCTCCTTGGGCACCCACTTGCCACCGAAATCTTGACAGTCCTTGAAGGAAAGCTCTTGGCTGGCTTCATCATTAACAATCTTGAGAACCGTTTGATCACCAAGACATTGAACAAGGGCAATTCCCAAAAGATTTGA

Protein sequence

MKQPSCPHPSFNPHSLYSQNQWVACGQRHQHNHLLLSNSSDPGANPRAQHSWHLLGHPLATEILTVLEGKLLAGFIINNLENRLITKTLNKGNSQKI

Homology

[Close]

BLAST of CmUC01G024840 vs. NCBI nr
Match: XP_004134642.1 (putative germin-like protein 2-1 [Cucumis sativus] >KGN49475.1 hypothetical protein Csa_003502 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 7.3e-06
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 57  HPLATEILTVLEGKLLAGFIINNLENRLITKTLNKGN 94
           HP ATEILTVLEGKLL GFI +N ENRLITKTL+KG+
Sbjct: 110 HPRATEILTVLEGKLLVGFITSNPENRLITKTLHKGD 146

[Close]

BLAST of CmUC01G024840 vs. NCBI nr
Match: XP_008439539.1 (PREDICTED: putative germin-like protein 2-1 [Cucumis melo] >KAA0052478.1 putative germin-like protein 2-1 [Cucumis melo var. makuwa] >TYK13344.1 putative germin-like protein 2-1 [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 7.3e-06
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 57  HPLATEILTVLEGKLLAGFIINNLENRLITKTLNKGN 94
           HP ATEILTVLEG LL GF+ +N ENRLITKTLNKG+
Sbjct: 110 HPRATEILTVLEGTLLVGFVTSNTENRLITKTLNKGD 146

[Close]

BLAST of CmUC01G024840 vs. NCBI nr
Match: XP_004134615.1 (putative germin-like protein 2-1 [Cucumis sativus] >KGN49474.1 hypothetical protein Csa_004414 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 7.3e-06
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 57  HPLATEILTVLEGKLLAGFIINNLENRLITKTLNKGN 94
           HP ATEILTVLEG LL GF+ +N ENRLITKTLNKG+
Sbjct: 109 HPRATEILTVLEGTLLVGFVTSNTENRLITKTLNKGD 145

[Close]

BLAST of CmUC01G024840 vs. NCBI nr
Match: KAA0052477.1 (putative germin-like protein 2-1 [Cucumis melo var. makuwa] >TYK13345.1 putative germin-like protein 2-1 [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 9.5e-06
Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 57  HPLATEILTVLEGKLLAGFIINNLENRLITKTLNKGN 94
           HP ATEILTVLEGKLL GFI +N ENRLITKTL KG+
Sbjct: 111 HPRATEILTVLEGKLLVGFITSNPENRLITKTLRKGD 147

[Close]

BLAST of CmUC01G024840 vs. NCBI nr
Match: XP_008439538.1 (PREDICTED: putative germin-like protein 2-1 [Cucumis melo])

HSP 1 Score: 60.5 bits (145), Expect = 9.5e-06
Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 57  HPLATEILTVLEGKLLAGFIINNLENRLITKTLNKGN 94
           HP ATEILTVLEGKLL GFI +N ENRLITKTL KG+
Sbjct: 111 HPRATEILTVLEGKLLVGFITSNPENRLITKTLRKGD 147

[Close]

BLAST of CmUC01G024840 vs. ExPASy Swiss-Prot
Match: Q6K5Q0 (Putative germin-like protein 2-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0491600 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.5e-06
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 0


Query: 57  HPLATEILTVLEGKLLAGFIINNLENRLITKTLNKGN 94
           HP ATEILT+LEG L  GF+ +N EN+L TK LNKG+
Sbjct: 110 HPRATEILTILEGSLYVGFVTSNPENKLFTKVLNKGD 146

[Close]

BLAST of CmUC01G024840 vs. ExPASy Swiss-Prot
Match: Q6K5P9 (Putative germin-like protein 2-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0491700 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.0e-06
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 0


Query: 57  HPLATEILTVLEGKLLAGFIINNLENRLITKTLNKGN 94
           HP ATEI TVLEG L  GF+I+N EN+L TK LNKG+
Sbjct: 117 HPRATEIPTVLEGSLYVGFVISNPENKLFTKVLNKGD 153

[Close]

BLAST of CmUC01G024840 vs. ExPASy Swiss-Prot
Match: Q6K5P8 (Putative germin-like protein 2-3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0491800 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.0e-06
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 0


Query: 57  HPLATEILTVLEGKLLAGFIINNLENRLITKTLNKGN 94
           HP ATEILTVLEG L  GF+ +N EN+L TK +NKG+
Sbjct: 117 HPRATEILTVLEGSLYVGFVTSNPENKLFTKVINKGD 153

[Close]

BLAST of CmUC01G024840 vs. ExPASy Swiss-Prot
Match: Q2QXJ0 (Putative germin-like protein 12-4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0155000 PE=3 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 3.4e-06
Identity = 29/51 (56.86%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 46  PRAQHSWHLLGHPLATEILTVLEGKLLAGFIIN---NLENRLITKTLNKGN 94
           P+ Q+  H   HP ATEILTVLEG L  GF+ +   N EN+L TKTLNKG+
Sbjct: 104 PKGQNPPHT--HPRATEILTVLEGSLYVGFVTSNQANRENKLFTKTLNKGD 152

[Close]

BLAST of CmUC01G024840 vs. ExPASy Swiss-Prot
Match: Q2QXJ2 (Germin-like protein 12-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0154800 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 4.4e-06
Identity = 29/51 (56.86%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 46  PRAQHSWHLLGHPLATEILTVLEGKLLAGFIINNL---ENRLITKTLNKGN 94
           P+ Q+  H   HP ATEILTVLEG L  GF+ +N    EN+L TKTLNKG+
Sbjct: 104 PKGQNPPHT--HPRATEILTVLEGTLYVGFVTSNQANGENKLFTKTLNKGD 152

[Close]

BLAST of CmUC01G024840 vs. ExPASy TrEMBL
Match: A0A5A7UBA7 (Germin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009690 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.5e-06
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 57  HPLATEILTVLEGKLLAGFIINNLENRLITKTLNKGN 94
           HP ATEILTVLEG LL GF+ +N ENRLITKTLNKG+
Sbjct: 110 HPRATEILTVLEGTLLVGFVTSNTENRLITKTLNKGD 146

[Close]

BLAST of CmUC01G024840 vs. ExPASy TrEMBL
Match: A0A0A0KKX1 (Germin-like protein OS=Cucumis sativus OX=3659 GN=Csa_6G525590 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.5e-06
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 57  HPLATEILTVLEGKLLAGFIINNLENRLITKTLNKGN 94
           HP ATEILTVLEG LL GF+ +N ENRLITKTLNKG+
Sbjct: 109 HPRATEILTVLEGTLLVGFVTSNTENRLITKTLNKGD 145

[Close]

BLAST of CmUC01G024840 vs. ExPASy TrEMBL
Match: A0A0A0KIB9 (Germin-like protein OS=Cucumis sativus OX=3659 GN=Csa_6G525600 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.5e-06
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 57  HPLATEILTVLEGKLLAGFIINNLENRLITKTLNKGN 94
           HP ATEILTVLEGKLL GFI +N ENRLITKTL+KG+
Sbjct: 110 HPRATEILTVLEGKLLVGFITSNPENRLITKTLHKGD 146

[Close]

BLAST of CmUC01G024840 vs. ExPASy TrEMBL
Match: A0A1S3AZN5 (Germin-like protein OS=Cucumis melo OX=3656 GN=LOC103484305 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.5e-06
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 57  HPLATEILTVLEGKLLAGFIINNLENRLITKTLNKGN 94
           HP ATEILTVLEG LL GF+ +N ENRLITKTLNKG+
Sbjct: 110 HPRATEILTVLEGTLLVGFVTSNTENRLITKTLNKGD 146

[Close]

BLAST of CmUC01G024840 vs. ExPASy TrEMBL
Match: A0A5A7UDA2 (Germin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009700 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.6e-06
Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 57  HPLATEILTVLEGKLLAGFIINNLENRLITKTLNKGN 94
           HP ATEILTVLEGKLL GFI +N ENRLITKTL KG+
Sbjct: 111 HPRATEILTVLEGKLLVGFITSNPENRLITKTLRKGD 147

[Close]

BLAST of CmUC01G024840 vs. TAIR 10
Match: AT5G38940.1 (RmlC-like cupins superfamily protein )

HSP 1 Score: 46.6 bits (109), Expect = 1.3e-05
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 0


Query: 57  HPLATEILTVLEGKLLAGFIINNLENRLITKTLNKGN 94
           HP ATEIL V +G LL GF+ +N +NRL +K LN+G+
Sbjct: 115 HPRATEILVVEQGTLLVGFVTSNPDNRLFSKVLNEGD 151

[Close]

BLAST of CmUC01G024840 vs. TAIR 10
Match: AT5G38930.1 (RmlC-like cupins superfamily protein )

HSP 1 Score: 46.2 bits (108), Expect = 1.7e-05
Identity = 22/37 (59.46%), Postives = 27/37 (72.97%), Query Frame = 0


Query: 57  HPLATEILTVLEGKLLAGFIINNLENRLITKTLNKGN 94
           HP ATEIL V  G LL GF+ +N +NRL TK LN+G+
Sbjct: 115 HPRATEILVVELGTLLVGFVTSNPDNRLFTKVLNEGD 151

[Close]

BLAST of CmUC01G024840 vs. TAIR 10
Match: AT5G38960.1 (RmlC-like cupins superfamily protein )

HSP 1 Score: 45.4 bits (106), Expect = 2.9e-05
Identity = 23/37 (62.16%), Postives = 25/37 (67.57%), Query Frame = 0


Query: 57  HPLATEILTVLEGKLLAGFIINNLENRLITKTLNKGN 94
           HP ATEIL V EG L  GF  +  ENRL  KTLNKG+
Sbjct: 114 HPRATEILLVQEGTLFVGFFSSFPENRLFNKTLNKGD 150

[Close]

BLAST of CmUC01G024840 vs. TAIR 10
Match: AT4G14630.1 (germin-like protein 9 )

HSP 1 Score: 43.9 bits (102), Expect = 8.6e-05
Identity = 26/49 (53.06%), Postives = 31/49 (63.27%), Query Frame = 0


Query: 46  PRAQHSWHLLGHPLATEILTVLEGKLLAGFIINNLE-NRLITKTLNKGN 94
           P  Q+  H   HP ATEIL V +G LL GFI +N + NRL  KTLN G+
Sbjct: 106 PNGQNPPHT--HPRATEILVVQQGTLLVGFISSNQDGNRLFAKTLNVGD 152

[Close]

BLAST of CmUC01G024840 vs. TAIR 10
Match: AT3G04200.1 (RmlC-like cupins superfamily protein )

HSP 1 Score: 41.6 bits (96), Expect = 4.3e-04
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 0


Query: 57  HPLATEILTVLEGKLLAGFIINNLE-NRLITKTLNKGN 94
           HP ATEIL V +GKLL GF+ +N + NRL  K L +G+
Sbjct: 115 HPRATEILVVTKGKLLVGFVSSNQDNNRLFYKVLKRGD 152

The following BLAST results are available for this feature:

BLAST of CmUC01G024840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134642.1	7.3e-06	81.08	putative germin-like protein 2-1 [Cucumis sativus] >KGN49475.1 hypothetical prot...	[more]
XP_008439539.1	7.3e-06	78.38	PREDICTED: putative germin-like protein 2-1 [Cucumis melo] >KAA0052478.1 putativ...	[more]
XP_004134615.1	7.3e-06	78.38	putative germin-like protein 2-1 [Cucumis sativus] >KGN49474.1 hypothetical prot...	[more]
KAA0052477.1	9.5e-06	81.08	putative germin-like protein 2-1 [Cucumis melo var. makuwa] >TYK13345.1 putative...	[more]
XP_008439538.1	9.5e-06	81.08	PREDICTED: putative germin-like protein 2-1 [Cucumis melo]	[more]

BLAST of CmUC01G024840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6K5Q0	1.5e-06	64.86	Putative germin-like protein 2-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os0...	[more]
Q6K5P9	2.0e-06	67.57	Putative germin-like protein 2-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os0...	[more]
Q6K5P8	2.0e-06	64.86	Putative germin-like protein 2-3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os0...	[more]
Q2QXJ0	3.4e-06	56.86	Putative germin-like protein 12-4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os...	[more]
Q2QXJ2	4.4e-06	56.86	Germin-like protein 12-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g015480...	[more]

BLAST of CmUC01G024840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UBA7	3.5e-06	78.38	Germin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G...	[more]
A0A0A0KKX1	3.5e-06	78.38	Germin-like protein OS=Cucumis sativus OX=3659 GN=Csa_6G525590 PE=3 SV=1	[more]
A0A0A0KIB9	3.5e-06	81.08	Germin-like protein OS=Cucumis sativus OX=3659 GN=Csa_6G525600 PE=3 SV=1	[more]
A0A1S3AZN5	3.5e-06	78.38	Germin-like protein OS=Cucumis melo OX=3656 GN=LOC103484305 PE=3 SV=1	[more]
A0A5A7UDA2	4.6e-06	81.08	Germin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G...	[more]

BLAST of CmUC01G024840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G38940.1	1.3e-05	56.76	RmlC-like cupins superfamily protein	[more]
AT5G38930.1	1.7e-05	59.46	RmlC-like cupins superfamily protein	[more]
AT5G38960.1	2.9e-05	62.16	RmlC-like cupins superfamily protein	[more]
AT4G14630.1	8.6e-05	53.06	germin-like protein 9	[more]
AT3G04200.1	4.3e-04	55.26	RmlC-like cupins superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006045	Cupin 1	PFAM	PF00190	Cupin_1	coord: 57..93 e-value: 3.0E-5 score: 23.6
IPR014710	RmlC-like jelly roll fold	GENE3D	2.60.120.10	Jelly Rolls	coord: 43..95 e-value: 1.7E-8 score: 36.1
IPR011051	RmlC-like cupin domain superfamily	SUPERFAMILY	51182	RmlC-like cupins	coord: 57..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC01G024840.1	CmUC01G024840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0048046	apoplast
molecular_function	GO:0030145	manganese ion binding