CmUC01G022730 (gene) Watermelon (USVL531) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATCAAAGTCATAAATCAAAGAACCACTTATTCAGGTGCAATTACTATTTATGTTGTTTGTGGATTTTCGGACGCAATAGAAATTACCCCAATTTTGTGTTCCAAACAAAAGCCCCTTTTGTTTGTTTTGTTGAATCTGATCAAATTCTCCGCAGCCCCCTCGTGATTTTCAAATCAATTTCCCTCACTTTCAATTTCTCATCAATTCATATATAAAAACCACATTCATGATTCAACCCTCAATAACTCTATTCATTCCAAAACCGCCATGCTTAACCAAACTGTGAGCTTCCCTTCCTCTCTTCCACTCTCTTTCAACCAATTAATTATGGTTTCCCCTTTCTGTTTTTCATTCTAATTCTTAATTATTATTTGTAGGATCATCAAGAGCTTCTCAACGGCTGGCCGCTTGGACTCCAAGTTATGAACACCAGACTTCGAATAATGGCAGACCCAGGGAGAGACGGTTTTTCCCCCTCCGATCCTTCCCCTGATTTCCACATTCCTTCAATGACTTTCTCCTCTCTCTCTTCCTCTGACCTCGACACTATGGTTTTTTAACTTATCTCCGTATTTCATTTCTCAATTTAACTCTTTTTGCTTACTTACATTTGGTTCTTTTAACAGTCCACGGCCTCGTTCTTCCAAGACCACAGCGTTTCTCTCGGCCGGCTGATCGGACTAAAGCCCCCCGACAAGACGTGGTTGTACTTCCCCACGGGGGAGACTCAGAGTGTATCGGTTAATTCCGCAGGCTTGGATGTTCCGAAAACGAACACCTCTGAAAATAAAATATCGGGACGAATCTGCATTCCGATTGTGATTGGTATAATCTTGAAGATGATGAGAAGTCGGAGAAATTCGAGAAGTTGAAGGTTAATACAACGCCGAAGGAGATTCAAGTACAATTCTTCCAACCTCATTTCTTGGCTTCTGAATTATGTAAACCAGTTTCAATGCGCAGTCTACTTCAAGAGTATAAAACAAAATAGGGGAAGGGTTTGAGGTTTCATTTTCTCCATCACTTTCCATAGAAACAAACAGAAACCAGATATCGAGGACTAATCCAAAATGTATTTGAAGAATTCCGATGCAAAATTTTCTAGTATTATCAGTATATGTAACGCAACCCC ATCAAAGTCATAAATCAAAGAACCACTTATTCAGGTGCAATTACTATTTATGTTGTTTGTGGATTTTCGGACGCAATAGAAATTACCCCAATTTTGTGTTCCAAACAAAAGCCCCTTTTGTTTGTTTTGTTGAATCTGATCAAATTCTCCGCAGCCCCCTCGTGATTTTCAAATCAATTTCCCTCACTTTCAATTTCTCATCAATTCATATATAAAAACCACATTCATGATTCAACCCTCAATAACTCTATTCATTCCAAAACCGCCATGCTTAACCAAACTGATCATCAAGAGCTTCTCAACGGCTGGCCGCTTGGACTCCAAGTTATGAACACCAGACTTCGAATAATGGCAGACCCAGGGAGAGACGGTTTTTCCCCCTCCGATCCTTCCCCTGATTTCCACATTCCTTCAATGACTTTCTCCTCTCTCTCTTCCTCTGACCTCGACACTATGTCCACGGCCTCGTTCTTCCAAGACCACAGCGTTTCTCTCGGCCGGCTGATCGGACTAAAGCCCCCCGACAAGACGTGGTTGTACTTCCCCACGGGGGAGACTCAGAGTGTATCGGTTAATTCCGCAGGCTTGGATGTTCCGAAAACGAACACCTCTGAAAATAAAATATCGGGACGAATCTGCATTCCGATTGTGATTGGTATAATCTTGAAGATGATGAGAAGTCGGAGAAATTCGAGAAGTTGAAGGTTAATACAACGCCGAAGGAGATTCAAGTACAATTCTTCCAACCTCATTTCTTGGCTTCTGAATTATGTAAACCAGTTTCAATGCGCAGTCTACTTCAAGAGTATAAAACAAAATAGGGGAAGGGTTTGAGGTTTCATTTTCTCCATCACTTTCCATAGAAACAAACAGAAACCAGATATCGAGGACTAATCCAAAATGTATTTGAAGAATTCCGATGCAAAATTTTCTAGTATTATCAGTATATGTAACGCAACCCC ATGCTTAACCAAACTGATCATCAAGAGCTTCTCAACGGCTGGCCGCTTGGACTCCAAGTTATGAACACCAGACTTCGAATAATGGCAGACCCAGGGAGAGACGGTTTTTCCCCCTCCGATCCTTCCCCTGATTTCCACATTCCTTCAATGACTTTCTCCTCTCTCTCTTCCTCTGACCTCGACACTATGTCCACGGCCTCGTTCTTCCAAGACCACAGCGTTTCTCTCGGCCGGCTGATCGGACTAAAGCCCCCCGACAAGACGTGGTTGTACTTCCCCACGGGGGAGACTCAGAGTGTATCGGTTAATTCCGCAGGCTTGGATGTTCCGAAAACGAACACCTCTGAAAATAAAATATCGGGACGAATCTGCATTCCGATTGTGATTGGTATAATCTTGAAGATGATGAGAAGTCGGAGAAATTCGAGAAGTTGA MLNQTDHQELLNGWPLGLQVMNTRLRIMADPGRDGFSPSDPSPDFHIPSMTFSSLSSSDLDTMSTASFFQDHSVSLGRLIGLKPPDKTWLYFPTGETQSVSVNSAGLDVPKTNTSENKISGRICIPIVIGIILKMMRSRRNSRS Homology
BLAST of CmUC01G022730 vs. NCBI nr
Match: XP_038883341.1 (uncharacterized protein At3g17950-like [Benincasa hispida]) HSP 1 Score: 234.6 bits (597), Expect = 5.5e-58 Identity = 118/146 (80.82%), Postives = 130/146 (89.04%), Query Frame = 0
BLAST of CmUC01G022730 vs. NCBI nr
Match: XP_008439814.1 (PREDICTED: uncharacterized protein LOC103484500 [Cucumis melo]) HSP 1 Score: 198.7 bits (504), Expect = 3.3e-47 Identity = 106/149 (71.14%), Postives = 120/149 (80.54%), Query Frame = 0
BLAST of CmUC01G022730 vs. NCBI nr
Match: XP_011658225.1 (uncharacterized protein LOC105435964 [Cucumis sativus] >KGN49251.1 hypothetical protein Csa_003245 [Cucumis sativus]) HSP 1 Score: 198.7 bits (504), Expect = 3.3e-47 Identity = 106/147 (72.11%), Postives = 121/147 (82.31%), Query Frame = 0
BLAST of CmUC01G022730 vs. NCBI nr
Match: XP_023517383.1 (uncharacterized protein LOC111781162 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 189.1 bits (479), Expect = 2.6e-44 Identity = 100/140 (71.43%), Postives = 116/140 (82.86%), Query Frame = 0
BLAST of CmUC01G022730 vs. NCBI nr
Match: XP_022926836.1 (uncharacterized protein LOC111433832 [Cucurbita moschata]) HSP 1 Score: 187.6 bits (475), Expect = 7.6e-44 Identity = 98/140 (70.00%), Postives = 116/140 (82.86%), Query Frame = 0
BLAST of CmUC01G022730 vs. ExPASy Swiss-Prot
Match: Q6DR24 (Uncharacterized protein At3g17950 OS=Arabidopsis thaliana OX=3702 GN=Y-3 PE=1 SV=1) HSP 1 Score: 48.5 bits (114), Expect = 7.3e-05 Identity = 31/75 (41.33%), Postives = 40/75 (53.33%), Query Frame = 0
BLAST of CmUC01G022730 vs. ExPASy TrEMBL
Match: A0A0A0KNE6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518080 PE=4 SV=1) HSP 1 Score: 198.7 bits (504), Expect = 1.6e-47 Identity = 106/147 (72.11%), Postives = 121/147 (82.31%), Query Frame = 0
BLAST of CmUC01G022730 vs. ExPASy TrEMBL
Match: A0A1S3B0C9 (uncharacterized protein LOC103484500 OS=Cucumis melo OX=3656 GN=LOC103484500 PE=4 SV=1) HSP 1 Score: 198.7 bits (504), Expect = 1.6e-47 Identity = 106/149 (71.14%), Postives = 120/149 (80.54%), Query Frame = 0
BLAST of CmUC01G022730 vs. ExPASy TrEMBL
Match: A0A6J1EFZ8 (uncharacterized protein LOC111433832 OS=Cucurbita moschata OX=3662 GN=LOC111433832 PE=4 SV=1) HSP 1 Score: 187.6 bits (475), Expect = 3.7e-44 Identity = 98/140 (70.00%), Postives = 116/140 (82.86%), Query Frame = 0
BLAST of CmUC01G022730 vs. ExPASy TrEMBL
Match: A0A6J1KXT6 (uncharacterized protein LOC111497316 OS=Cucurbita maxima OX=3661 GN=LOC111497316 PE=4 SV=1) HSP 1 Score: 185.3 bits (469), Expect = 1.8e-43 Identity = 97/140 (69.29%), Postives = 115/140 (82.14%), Query Frame = 0
BLAST of CmUC01G022730 vs. ExPASy TrEMBL
Match: A0A6J1CL22 (uncharacterized protein LOC111012415 OS=Momordica charantia OX=3673 GN=LOC111012415 PE=4 SV=1) HSP 1 Score: 174.1 bits (440), Expect = 4.2e-40 Identity = 96/142 (67.61%), Postives = 112/142 (78.87%), Query Frame = 0
BLAST of CmUC01G022730 vs. TAIR 10
Match: AT3G17950.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 48.5 bits (114), Expect = 5.2e-06 Identity = 31/75 (41.33%), Postives = 40/75 (53.33%), Query Frame = 0
BLAST of CmUC01G022730 vs. TAIR 10
Match: AT5G02440.1 (unknown protein; Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 47.8 bits (112), Expect = 8.8e-06 Identity = 36/89 (40.45%), Postives = 43/89 (48.31%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
|