CmUC01G022690 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC01G022690
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	F-box domain-containing protein
Location	CmU531Chr01: 34611787 .. 34612065 (-)
RNA-Seq Expression	CmUC01G022690
Synteny	CmUC01G022690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTGGAGCTTTTCGTCTTGGGCTGCACCGGCGTTGTCGTCTTCCTCCATGGAGCCAATTTCTTCTTCCACGCTCTCTGGCACCCTTTCACCGTCCGGTTTCTCAGGTATCCTCCTATTTTCTTCCATTCATTTAGGGCGTTTTCCTCTGTTCCTGAACACCACGCTCTATCCAATTCTTCACCCTCCTCTTCTATTCTCTCTTTCCCATTTTTCTGTGATTCTGCTAAACCTAATTACTCGAATTTTGATGAATGCTTGAGTTTCATCGGCTAA

mRNA sequence

ATGGCGTTGGAGCTTTTCGTCTTGGGCTGCACCGGCGTTGTCGTCTTCCTCCATGGAGCCAATTTCTTCTTCCACGCTCTCTGGCACCCTTTCACCGTCCGGTTTCTCAGGTATCCTCCTATTTTCTTCCATTCATTTAGGGCGTTTTCCTCTGTTCCTGAACACCACGCTCTATCCAATTCTTCACCCTCCTCTTCTATTCTCTCTTTCCCATTTTTCTGTGATTCTGCTAAACCTAATTACTCGAATTTTGATGAATGCTTGAGTTTCATCGGCTAA

Coding sequence (CDS)

ATGGCGTTGGAGCTTTTCGTCTTGGGCTGCACCGGCGTTGTCGTCTTCCTCCATGGAGCCAATTTCTTCTTCCACGCTCTCTGGCACCCTTTCACCGTCCGGTTTCTCAGGTATCCTCCTATTTTCTTCCATTCATTTAGGGCGTTTTCCTCTGTTCCTGAACACCACGCTCTATCCAATTCTTCACCCTCCTCTTCTATTCTCTCTTTCCCATTTTTCTGTGATTCTGCTAAACCTAATTACTCGAATTTTGATGAATGCTTGAGTTTCATCGGCTAA

Protein sequence

MALELFVLGCTGVVVFLHGANFFFHALWHPFTVRFLRYPPIFFHSFRAFSSVPEHHALSNSSPSSSILSFPFFCDSAKPNYSNFDECLSFIG

Homology

[Close]

BLAST of CmUC01G022690 vs. NCBI nr
Match: KAG7034606.1 (hypothetical protein SDJN02_04336 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 71.6 bits (174), Expect = 3.9e-09
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 1  MALELFVLGCTGVVVFLHGANFFFHALWHPFTVRFLRYPPIF 43
          MALEL VLGCTGVV+FLHGANFFFHALW  FTVR LR+ P+F
Sbjct: 1  MALELLVLGCTGVVIFLHGANFFFHALWQHFTVRSLRHFPLF 42

[Close]

BLAST of CmUC01G022690 vs. NCBI nr
Match: KAG8634527.1 (hypothetical protein MANES_17G048550v8 [Manihot esculenta])

HSP 1 Score: 56.6 bits (135), Expect = 1.3e-04
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 1  MALELFVLGCTGVVVFLHGANFFFHALWHPFTVRFLRY 39
          MA+ELFVLGCTGVV+FLHGANFFFHAL     VR L +
Sbjct: 1  MAVELFVLGCTGVVMFLHGANFFFHALSQHLAVRSLSF 38

[Close]

BLAST of CmUC01G022690 vs. NCBI nr
Match: PON37879.1 (hypothetical protein PanWU01x14_317000 [Parasponia andersonii])

HSP 1 Score: 56.2 bits (134), Expect = 1.7e-04
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 3  LELFVLGCTGVVVFLHGANFFFHALWHPFTVRFLR 38
          +ELF+LGCTG+VVFLHGANFFFHAL    T+R LR
Sbjct: 2  VELFLLGCTGIVVFLHGANFFFHALTQHLTIRSLR 36

[Close]

BLAST of CmUC01G022690 vs. NCBI nr
Match: PON61367.1 (hypothetical protein TorRG33x02_281910 [Trema orientale])

HSP 1 Score: 56.2 bits (134), Expect = 1.7e-04
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 3  LELFVLGCTGVVVFLHGANFFFHALWHPFTVRFLR 38
          +ELF+LGCTG+VVFLHGANFFFHAL    T+R LR
Sbjct: 2  VELFLLGCTGIVVFLHGANFFFHALTQHLTIRSLR 36

[Close]

BLAST of CmUC01G022690 vs. NCBI nr
Match: TYI04626.1 (hypothetical protein ES332_A10G032800v1 [Gossypium tomentosum])

HSP 1 Score: 56.2 bits (134), Expect = 1.7e-04
Identity = 28/37 (75.68%), Postives = 29/37 (78.38%), Query Frame = 0


Query: 1  MALELFVLGCTGVVVFLHGANFFFHALWHPFTVRFLR 38
          M +ELFVLGCTGVVVFLHGANFFFH L     VR LR
Sbjct: 1  MMMELFVLGCTGVVVFLHGANFFFHVLSQHLAVRSLR 37

[Close]

BLAST of CmUC01G022690 vs. ExPASy TrEMBL
Match: A0A2P5AMV0 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_317000 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.2e-05
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 3  LELFVLGCTGVVVFLHGANFFFHALWHPFTVRFLR 38
          +ELF+LGCTG+VVFLHGANFFFHAL    T+R LR
Sbjct: 2  VELFLLGCTGIVVFLHGANFFFHALTQHLTIRSLR 36

[Close]

BLAST of CmUC01G022690 vs. ExPASy TrEMBL
Match: A0A5D2NLM3 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A10G032800v1 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.2e-05
Identity = 28/37 (75.68%), Postives = 29/37 (78.38%), Query Frame = 0


Query: 1  MALELFVLGCTGVVVFLHGANFFFHALWHPFTVRFLR 38
          M +ELFVLGCTGVVVFLHGANFFFH L     VR LR
Sbjct: 1  MMMELFVLGCTGVVVFLHGANFFFHVLSQHLAVRSLR 37

[Close]

BLAST of CmUC01G022690 vs. ExPASy TrEMBL
Match: A0A2P5CJZ9 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_281910 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.2e-05
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 3  LELFVLGCTGVVVFLHGANFFFHALWHPFTVRFLR 38
          +ELF+LGCTG+VVFLHGANFFFHAL    T+R LR
Sbjct: 2  VELFLLGCTGIVVFLHGANFFFHALTQHLTIRSLR 36

[Close]

BLAST of CmUC01G022690 vs. ExPASy TrEMBL
Match: A0A5D2AZA5 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A10G032000v1 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.4e-04
Identity = 27/38 (71.05%), Postives = 29/38 (76.32%), Query Frame = 0


Query: 1  MALELFVLGCTGVVVFLHGANFFFHALWHPFTVRFLRY 39
          M +ELFVLGCTGVVVFLHGANFFFH L     VR L +
Sbjct: 1  MMMELFVLGCTGVVVFLHGANFFFHVLSQHLAVRSLSF 38

[Close]

BLAST of CmUC01G022690 vs. ExPASy TrEMBL
Match: A0A5J5TXY1 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A10G030200v1 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.4e-04
Identity = 27/38 (71.05%), Postives = 29/38 (76.32%), Query Frame = 0


Query: 1  MALELFVLGCTGVVVFLHGANFFFHALWHPFTVRFLRY 39
          M +ELFVLGCTGVVVFLHGANFFFH L     VR L +
Sbjct: 1  MMMELFVLGCTGVVVFLHGANFFFHVLSQHLAVRSLSF 38

The following BLAST results are available for this feature:

BLAST of CmUC01G022690 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034606.1	3.9e-09	80.95	hypothetical protein SDJN02_04336 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG8634527.1	1.3e-04	73.68	hypothetical protein MANES_17G048550v8 [Manihot esculenta]	[more]
PON37879.1	1.7e-04	74.29	hypothetical protein PanWU01x14_317000 [Parasponia andersonii]	[more]
PON61367.1	1.7e-04	74.29	hypothetical protein TorRG33x02_281910 [Trema orientale]	[more]
TYI04626.1	1.7e-04	75.68	hypothetical protein ES332_A10G032800v1 [Gossypium tomentosum]	[more]

BLAST of CmUC01G022690 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC01G022690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5AMV0	8.2e-05	74.29	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_317000 PE...	[more]
A0A5D2NLM3	8.2e-05	75.68	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A10G032800v1 P...	[more]
A0A2P5CJZ9	8.2e-05	74.29	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_281910 PE=4 SV...	[more]
A0A5D2AZA5	2.4e-04	71.05	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A10G032000v1 PE=...	[more]
A0A5J5TXY1	2.4e-04	71.05	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A10G030200v1 PE...	[more]

BLAST of CmUC01G022690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC01G022690.1	CmUC01G022690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008270	zinc ion binding