CmUC01G021840 (gene) Watermelon (USVL531) v1

Overview
NameCmUC01G021840
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionUnknown protein
LocationCmU531Chr01: 34028390 .. 34029507 (-)
RNA-Seq ExpressionCmUC01G021840
SyntenyCmUC01G021840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAGAGCTCCCACACCCTTCCTCGCTCCCACACCCTTCCTCACTCCCTCTGCTCAGCGTCGTCTTCCCATTTCGCCTATTTTTCTCGACACAGTTCTCGCAAAACGCAACCGTAGCCACGAGCTTCGGCCCAGTCCCATTCCAAGGCGTGGGGGCTTGGCAATCATGGCACAGCAAAGCCCTCAAATGCTTCCCCACTAGAAAATTAGCGCCATGGACCTTGGAATCGCACCCCCAACACAACCTGGCTGCGTCCGATTCGCACATCACCGTAGCCACACACTCGCACAGCTCGCACAATTTCTTCATTTTAGTTACCCCTCACTCTCATCACTTATTTATTTATACAAACAGAGAGAAGCAAAGCAATGAAGGGTGGCCCATATTATGCAGAGATGTAAGGGAATCAAGTTGGGACTTGGGTTCCTATTTTTTCTCTGTATTTGGACGAAGAAATATCATGGAAAGGGGGTAATGGGGATTTTGTTTTCTGTCTTTTTTGGTTTAGTGTACGGTGCTTGTTATGGTCATTTTTGGGGCAAGTGGGTGTTTTAGATAATTTTGTGGCTACAATCAATGAATCCCATTCCTGTGGGCGAACATTTCTGGGTTTTTTTCTTTTTTTCATGTGGGCTTCCAAGTTTTTTACGGTTTTTTCCTATTTGGTTTCCTCTGAATTTTCCTAAATTTCTGTTGCACTCTGTCTCAACATAGTCAACAACCCATTTTACAATTGTCTACGTGTCCAGGTTAATTAAAGTATAATAACATTTTTTAAAAAACATTACAAATATGACCAAAGTTATTTTTGATAAACGCCGCTATTCATATTGTATGTTACCCGTTGACTTTGAAAACAAAATTTATTTTGCTATATTTGTAATTTTTTGCATTATACTACTACATCTACAACCGCCCCTAAAATATAGTTGTTCTATAATGTTCAACAGGTTATATCCACAATTATATTGTACAGAAAAAGAAAAAGGCATTGAAGTAATTGATGAAAATTTATTCTTTTGATTTGTGGATTTTGATTGACTTTTTAAAATCTTTGATTTAAAGGGGAAAAATCATTTTCATAGACTTTATAGTTTGAGGATCATTCAAATTACATGA

mRNA sequence

TTAGAGCTCCCACACCCTTCCTCGCTCCCACACCCTTCCTCACTCCCTCTGCTCAGCGTCGTCTTCCCATTTCGCCTATTTTTCTCGACACAGTTCTCGCAAAACGCAACCGTAGCCACGAGCTTCGGCCCAGTCCCATTCCAAGGCGTGGGGGCTTGGCAATCATGGCACAGCAAAGCCCTCAAATGCTTCCCCACTAGAAAATTAGCGCCATGGACCTTGGAATCGCACCCCCAACACAACCTGGCTGCGTCCGATTCGCACATCACCGTAGCCACACACTCGCACAGCTCGCACAATTTCTTCATTTTAGTTACCCCTCACTCTCATCACTTATTTATTTATACAAACAGAGAGAAGCAAAGCAATGAAGGGTGGCCCATATTATGCAGAGATTGTACGGTGCTTGTTATGGTCATTTTTGGGGCAAAAAAAGAAAAAGGCATTGAAGGGAAAAATCATTTTCATAGACTTTATAGTTTGAGGATCATTCAAATTACATGA

Coding sequence (CDS)

TTAGAGCTCCCACACCCTTCCTCGCTCCCACACCCTTCCTCACTCCCTCTGCTCAGCGTCGTCTTCCCATTTCGCCTATTTTTCTCGACACAGTTCTCGCAAAACGCAACCGTAGCCACGAGCTTCGGCCCAGTCCCATTCCAAGGCGTGGGGGCTTGGCAATCATGGCACAGCAAAGCCCTCAAATGCTTCCCCACTAGAAAATTAGCGCCATGGACCTTGGAATCGCACCCCCAACACAACCTGGCTGCGTCCGATTCGCACATCACCGTAGCCACACACTCGCACAGCTCGCACAATTTCTTCATTTTAGTTACCCCTCACTCTCATCACTTATTTATTTATACAAACAGAGAGAAGCAAAGCAATGAAGGGTGGCCCATATTATGCAGAGATTGTACGGTGCTTGTTATGGTCATTTTTGGGGCAAAAAAAGAAAAAGGCATTGAAGGGAAAAATCATTTTCATAGACTTTATAGTTTGAGGATCATTCAAATTACATGA

Protein sequence

LELPHPSSLPHPSSLPLLSVVFPFRLFFSTQFSQNATVATSFGPVPFQGVGAWQSWHSKALKCFPTRKLAPWTLESHPQHNLAASDSHITVATHSHSSHNFFILVTPHSHHLFIYTNREKQSNEGWPILCRDCTVLVMVIFGAKKEKGIEGKNHFHRLYSLRIIQIT
Homology
[Close]
BLAST of CmUC01G021840 vs. NCBI nr
Match: KAG8100284.1 (hypothetical protein GUJ93_ZPchr0013g35681 [Zizania palustris])

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-05
Identity = 37/82 (45.12%), Postives = 40/82 (48.78%), Query Frame = 0 

Query: 4   PHPSSLPHPSSLPLLSVVFPFRLFFSTQFSQNATVATSFGPVPFQGVGAWQSWHSKALKC 63
           P PSS    S  P      P R    T  S N  V  S  P    GVG    WHS A  C
Sbjct: 28  PSPSSAISSSPQPQPPPPPPPR---RTHRSHNDAVVPSLDPAARHGVGRAHPWHSSARAC 87

Query: 64  FPTRKLAPWTLESHPQHNLAAS 86
             TRKLAPWT  SHPQH++A+S
Sbjct: 88  RTTRKLAPWTCASHPQHSVASS 106

The following BLAST results are available for this feature:
BLAST of CmUC01G021840 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG8100284.11.6e-0545.12hypothetical protein GUJ93_ZPchr0013g35681 [Zizania palustris][more]
BLAST of CmUC01G021840 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CmUC01G021840 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CmUC01G021840 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC01G021840.1CmUC01G021840.1mRNA