CmUC01G015240 (gene) Watermelon (USVL531) v1

Overview
NameCmUC01G015240
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionHeat shock protein 40
LocationCmU531Chr01: 28763461 .. 28763706 (-)
RNA-Seq ExpressionCmUC01G015240
SyntenyCmUC01G015240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAAGAAAAACAGCGACGAGAAAAGAAATTCGATTGTGGTTAGGTATGGGGAAACAAGAAGAAAGGCAACGCCGTATTGGTCGCCGGCGATGGATAATATAGTGCAAGTTTCTTACAAGAAGCTATTGATTGAAGCAATGGATCAAATCGATTCGAAAATCGATCGTGTTCTTTATTCTTCCAACAAGACCAGGAGATTACCAATTTTTGATGAGATTTGTCCATTTTATTCCTCTTTGTGA

mRNA sequence

ATGGACAAGAAAAACAGCGACGAGAAAAGAAATTCGATTGTGGTTAGGTATGGGGAAACAAGAAGAAAGGCAACGCCGTATTGGTCGCCGGCGATGGATAATATAGTGCAAGTTTCTTACAAGAAGCTATTGATTGAAGCAATGGATCAAATCGATTCGAAAATCGATCGTGTTCTTTATTCTTCCAACAAGACCAGGAGATTACCAATTTTTGATGAGATTTGTCCATTTTATTCCTCTTTGTGA

Coding sequence (CDS)

ATGGACAAGAAAAACAGCGACGAGAAAAGAAATTCGATTGTGGTTAGGTATGGGGAAACAAGAAGAAAGGCAACGCCGTATTGGTCGCCGGCGATGGATAATATAGTGCAAGTTTCTTACAAGAAGCTATTGATTGAAGCAATGGATCAAATCGATTCGAAAATCGATCGTGTTCTTTATTCTTCCAACAAGACCAGGAGATTACCAATTTTTGATGAGATTTGTCCATTTTATTCCTCTTTGTGA

Protein sequence

MDKKNSDEKRNSIVVRYGETRRKATPYWSPAMDNIVQVSYKKLLIEAMDQIDSKIDRVLYSSNKTRRLPIFDEICPFYSSL
Homology
BLAST of CmUC01G015240 vs. NCBI nr
Match: TYK12969.1 (heat shock protein 40 [Cucumis melo var. makuwa])

HSP 1 Score: 107.8 bits (268), Expect = 4.3e-20
Identity = 50/80 (62.50%), Postives = 67/80 (83.75%), Query Frame = 0

Query: 1  MDKKNSDEKRNSIVVRYGETRRKATPYWSPAMDNIVQVSYKKLLIEAMDQIDSKIDRVLY 60
          M+KKN+D+K+  IV+R GETR+K+T  WSPAMDNIV++S K  L +A+D++DSKID +LY
Sbjct: 1  MEKKNNDDKKAPIVLRSGETRKKSTANWSPAMDNIVKLSRKMTLGKALDELDSKIDAILY 60

Query: 61 SSNKTRRLPIFDEICPFYSS 81
          S  KT+RLPIF+EICP +SS
Sbjct: 61 SPRKTKRLPIFEEICPIHSS 80

BLAST of CmUC01G015240 vs. NCBI nr
Match: KAE8647478.1 (hypothetical protein Csa_003673 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 8.2e-19
Identity = 49/81 (60.49%), Postives = 69/81 (85.19%), Query Frame = 0

Query: 1  MDKKNSDEKRNSIVVRYGETRRKATPYWSPAMDNIVQVSYKKLLIEAMDQIDSKIDRVLY 60
          M+KKN+D+K+  IV+R GET++K+T  WSPAMDNIV++S K  L EA+D++D+KID +LY
Sbjct: 1  MEKKNNDDKKTPIVLRSGETKKKSTSNWSPAMDNIVKLSPKMSLGEALDELDAKIDAILY 60

Query: 61 SSN-KTRRLPIFDEICPFYSS 81
          SS+ +T+RLPIF+EICP +SS
Sbjct: 61 SSSRRTKRLPIFEEICPIHSS 81

BLAST of CmUC01G015240 vs. NCBI nr
Match: KAG6604244.1 (hypothetical protein SDJN03_04853, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 78.6 bits (192), Expect = 2.8e-11
Identity = 44/76 (57.89%), Postives = 54/76 (71.05%), Query Frame = 0

Query: 6  SDEKRNSIVVRYGETRRKATPYWSPAMDNIVQV-SYKKLLIEAMDQIDSKIDRVLYSSNK 65
          + +KR  IVV  GET  K T  WSP MD+IVQ+ S  K L + +D+IDSKIDRVLYSS  
Sbjct: 11 NSQKRIPIVVNPGETSTKFT-MWSPLMDHIVQISSSNKSLADNVDEIDSKIDRVLYSSKN 70

Query: 66 TRRLPIFDEICPFYSS 81
           RRLPIF+E+CP  S+
Sbjct: 71 FRRLPIFEEMCPSSSA 85

BLAST of CmUC01G015240 vs. ExPASy TrEMBL
Match: A0A5D3CRK5 (Heat shock protein 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005660 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.1e-20
Identity = 50/80 (62.50%), Postives = 67/80 (83.75%), Query Frame = 0

Query: 1  MDKKNSDEKRNSIVVRYGETRRKATPYWSPAMDNIVQVSYKKLLIEAMDQIDSKIDRVLY 60
          M+KKN+D+K+  IV+R GETR+K+T  WSPAMDNIV++S K  L +A+D++DSKID +LY
Sbjct: 1  MEKKNNDDKKAPIVLRSGETRKKSTANWSPAMDNIVKLSRKMTLGKALDELDSKIDAILY 60

Query: 61 SSNKTRRLPIFDEICPFYSS 81
          S  KT+RLPIF+EICP +SS
Sbjct: 61 SPRKTKRLPIFEEICPIHSS 80

BLAST of CmUC01G015240 vs. ExPASy TrEMBL
Match: A0A0A0KKZ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486980 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 4.0e-19
Identity = 49/81 (60.49%), Postives = 69/81 (85.19%), Query Frame = 0

Query: 1  MDKKNSDEKRNSIVVRYGETRRKATPYWSPAMDNIVQVSYKKLLIEAMDQIDSKIDRVLY 60
          M+KKN+D+K+  IV+R GET++K+T  WSPAMDNIV++S K  L EA+D++D+KID +LY
Sbjct: 1  MEKKNNDDKKTPIVLRSGETKKKSTSNWSPAMDNIVKLSPKMSLGEALDELDAKIDAILY 60

Query: 61 SSN-KTRRLPIFDEICPFYSS 81
          SS+ +T+RLPIF+EICP +SS
Sbjct: 61 SSSRRTKRLPIFEEICPIHSS 81

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK12969.14.3e-2062.50heat shock protein 40 [Cucumis melo var. makuwa][more]
KAE8647478.18.2e-1960.49hypothetical protein Csa_003673 [Cucumis sativus][more]
KAG6604244.12.8e-1157.89hypothetical protein SDJN03_04853, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CRK52.1e-2062.50Heat shock protein 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25... [more]
A0A0A0KKZ24.0e-1960.49Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486980 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC01G015240.1CmUC01G015240.1mRNA