CmUC01G015110 (gene) Watermelon (USVL531) v1

Overview
NameCmUC01G015110
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionUnknown protein
LocationCmU531Chr01: 28614154 .. 28615370 (+)
RNA-Seq ExpressionCmUC01G015110
SyntenyCmUC01G015110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACTACCAATTCAATCGTTAAACATTCTCTGCCATTTTCCAGCATTTAATGGCGGCAATCCTGGGGCGTTTCTTCTGCTTTTCAACTCCTTTTTATCTCTCTTCTTCTTCTTCCTCTTCATTTCAAAGGTCCGTAGTTGCCTCGACCTTTCACAGTTTTGACTCTTTCTTTCTTTCTTTCTTTCTTTCTCGCCTGCTTTTGTTTCTTTCTTTGTTTATTTACTGCCAACACTCCTTTTTCCACCCAATCACACGCCAACCTTCTTTGATTCTTCTCTTTATTTGTCCTTTGATTCAAATTCCATAAACCCTATTCTTGCTCTTCTTCCTGACCCCTTTTTCCTGCGGAATCTGGATGAATTGGATCTAATTTAATGTGGGTTTTGCTTCAATTTTGTTGTTTTTATGTTTATTGCTTTGCTGCTTGTGGATTTTTGGATGTCGGGATTTGTTGATCGGTGTGTTCAATCTCTGAATGAAATTGGGTCTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTGACTCGTTGATTTTACTCTTCAGCTCTTGAATATTTCCCCGCTTTTAATTCATTTTTTAGCTTCTTGTTCAAAGATTTCAATTGTTTTAGCTTGAATTTCTGTTGGGGCATTTTTCTTTCTTTCTTTTTAATATTTATATTGTGGTTATACAATGGTCTAAGAGTTAATTATGGCCAAAATGTAACGATTCGACAAGGAATCATCTCTCTGTTACGATTATTACTATTATTTTTTTGGTTAGAGATCTGAATCCCCCAATTTTAAATGCTATAACAATGAAAGCTCTTAAGTAGAAGGACCTGCGCTTTAAAATTGGCCCGTGTATGGTTTTCGTTTTTGGTTGGCCAGTAGATGTTTTGTGTTATGATTTTCTTGTATGTAAATAAATTTGGAACGTTCTTGTAAAATTTGATGTTTTCTTTTTAAACTTGTTGACCTTTAGGAGTTATTTTTCTTCACTTGTCTTTTTGACTTCTATTCAGGTTATTTCCCCTCTGCACCTACCGGTCGTTTAATATGTTTAAGTTAAATCTTTTCTGAAGGAAATATTATAAAATTTTATTGGTTCTTCTTCGGCCTTCTATTTATTTATACCAGTCATTGGATTTTTGCTGATAGTAAATTGTGTACTACAGATAATACTGTTGAGCATCAAGATCAAGCACTTCAGGTTTTTTCTTTTGAATGAAGATTGA

mRNA sequence

ATGTCACTACCAATTCAATCGTTAAACATTCTCTGCCATTTTCCAGCATTTAATGGCGGCAATCCTGGGGCGTTTCTTCTGCTTTTCAACTCCTTTTTATCTCTCTTCTTCTTCTTCCTCTTCATTTCAAAGGTCCTCATTGGATTTTTGCTGATAGTAAATTGTGTACTACAGATAATACTGTTGAGCATCAAGATCAAGCACTTCAGGTTTTTTCTTTTGAATGAAGATTGA

Coding sequence (CDS)

ATGTCACTACCAATTCAATCGTTAAACATTCTCTGCCATTTTCCAGCATTTAATGGCGGCAATCCTGGGGCGTTTCTTCTGCTTTTCAACTCCTTTTTATCTCTCTTCTTCTTCTTCCTCTTCATTTCAAAGGTCCTCATTGGATTTTTGCTGATAGTAAATTGTGTACTACAGATAATACTGTTGAGCATCAAGATCAAGCACTTCAGGTTTTTTCTTTTGAATGAAGATTGA

Protein sequence

MSLPIQSLNILCHFPAFNGGNPGAFLLLFNSFLSLFFFFLFISKVLIGFLLIVNCVLQIILLSIKIKHFRFFLLNED
Homology
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BLAST of CmUC01G015110 vs. NCBI nr
Match: KAG7027116.1 (hypothetical protein SDJN02_11127 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 92.0 bits (227), Expect = 2.3e-15
Identity = 51/77 (66.23%), Postives = 56/77 (72.73%), Query Frame = 0 

Query: 1  MSLPIQSLNILCHFPAFNGGNPGAFLLLFNSFLSLFFFFLFISKVLIGFLLIVNCVLQII 60
          M +P QSLNILCHFPAFNGGNPGAFLL+FNSFL+LFFF   ISK              ++
Sbjct: 1  MCVPFQSLNILCHFPAFNGGNPGAFLLIFNSFLALFFFIRSISK--------------LV 60

Query: 61 LLSIKIKHFRFFLLNED 78
          L SIKIKHF FFLLNED
Sbjct: 61 LRSIKIKHFCFFLLNED 63

The following BLAST results are available for this feature:
BLAST of CmUC01G015110 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7027116.12.3e-1566.23hypothetical protein SDJN02_11127 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of CmUC01G015110 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CmUC01G015110 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CmUC01G015110 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC01G015110.1CmUC01G015110.1mRNA