CmUC01G014500 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC01G014500
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Iron-sulfur binding oxidoreductase
Location	CmU531Chr01: 27949473 .. 27949823 (+)
RNA-Seq Expression	CmUC01G014500
Synteny	CmUC01G014500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGATCTTGGGAGTAACTATAGGAGGTGTGTTGAATATTGGTGGGCAAAATTGGGATGGTAGCCACAACTTGGAAGGTTTCGAAGCCATTGGGAATCTGGAAAACAAGATTTTGCATGAAATTGTAGAATTCGTGGTGCCAGTGATTGCGAAGGCGGTAGGACATGAGCTGAGGTTGAAGGCTATTGTGGCTGCTAGCCTTCAGCTGCGACCCAACGGCAAACTGTACCGCATTAAGGTGAAGGTGGAAGCCAAAGTGGACTGTATTTGGTTAACTAAAACATATGAGGCTGATGTCTTTATCCCATTTTTTGGCCCTTGGGAATGCAAATCTTTCCATCTTTGCTAA

mRNA sequence

ATGACGATCTTGGGAGTAACTATAGGAGGTGTGTTGAATATTGGTGGGCAAAATTGGGATGGTAGCCACAACTTGGAAGGTTTCGAAGCCATTGGGAATCTGGAAAACAAGATTTTGCATGAAATTGTAGAATTCGTGGTGCCAGTGATTGCGAAGGCGGTAGGACATGAGCTGAGGTTGAAGGCTATTGTGGCTGCTAGCCTTCAGCTGCGACCCAACGGCAAACTGTACCGCATTAAGGTGAAGGTGGAAGCCAAAGTGGACTGTATTTGGTTAACTAAAACATATGAGGCTGATGTCTTTATCCCATTTTTTGGCCCTTGGGAATGCAAATCTTTCCATCTTTGCTAA

Coding sequence (CDS)

ATGACGATCTTGGGAGTAACTATAGGAGGTGTGTTGAATATTGGTGGGCAAAATTGGGATGGTAGCCACAACTTGGAAGGTTTCGAAGCCATTGGGAATCTGGAAAACAAGATTTTGCATGAAATTGTAGAATTCGTGGTGCCAGTGATTGCGAAGGCGGTAGGACATGAGCTGAGGTTGAAGGCTATTGTGGCTGCTAGCCTTCAGCTGCGACCCAACGGCAAACTGTACCGCATTAAGGTGAAGGTGGAAGCCAAAGTGGACTGTATTTGGTTAACTAAAACATATGAGGCTGATGTCTTTATCCCATTTTTTGGCCCTTGGGAATGCAAATCTTTCCATCTTTGCTAA

Protein sequence

MTILGVTIGGVLNIGGQNWDGSHNLEGFEAIGNLENKILHEIVEFVVPVIAKAVGHELRLKAIVAASLQLRPNGKLYRIKVKVEAKVDCIWLTKTYEADVFIPFFGPWECKSFHLC

Homology

[Close]

BLAST of CmUC01G014500 vs. NCBI nr
Match: KAE8645929.1 (hypothetical protein Csa_021384 [Cucumis sativus] >KGN48306.1 hypothetical protein Csa_002744 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-09
Identity = 35/90 (38.89%), Postives = 61/90 (67.78%), Query Frame = 0


Query: 28  FEAIGN-LENKILHEIVEFVVPVIAKAVGHELRLKAIVAASLQLRPNGKLYRIKVKVEAK 87
           F +I N  +++++ EI  + + V+++ +  EL+L+A+VAA++ L   GKLYR K++V+AK
Sbjct: 25  FRSIDNCAKDRVVVEIATWSLTVVSEKLQVELKLRAVVAAAIALFTKGKLYRFKIQVDAK 84

Query: 88  VDCIWLTKTYEADVFIPFFGPWECKSFHLC 117
            +C    +TY+ +V+IP  G WE +S  LC
Sbjct: 85  TNCGSSVQTYDVEVWIPLVGKWEVRSHRLC 114

[Close]

BLAST of CmUC01G014500 vs. NCBI nr
Match: KAA0025184.1 (Iron-sulfur binding oxidoreductase [Cucumis melo var. makuwa] >TYK07479.1 Iron-sulfur binding oxidoreductase [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 4.2e-08
Identity = 33/89 (37.08%), Postives = 56/89 (62.92%), Query Frame = 0


Query: 28  FEAIGN-LENKILHEIVEFVVPVIAKAVGHELRLKAIVAASLQLRPNGKLYRIKVKVEAK 87
           F AI N   +K++ +I  + + VIA     EL+L+ +V+A++ L   GKLYR+ ++ +AK
Sbjct: 25  FRAINNCATDKVVVQIATWTLTVIAAKHQIELKLRLVVSAAIALFTKGKLYRLTIQADAK 84

Query: 88  VDCIWLTKTYEADVFIPFFGPWECKSFHL 116
            +  W+  TY+ +V++P  GPWE +S  L
Sbjct: 85  TNSGWVVHTYDVEVWLPLVGPWEVRSHKL 113

[Close]

BLAST of CmUC01G014500 vs. ExPASy TrEMBL
Match: A0A0A0KKM6 (Iron-sulfur binding oxidoreductase OS=Cucumis sativus OX=3659 GN=Csa_6G465000 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.3e-10
Identity = 35/90 (38.89%), Postives = 61/90 (67.78%), Query Frame = 0


Query: 28  FEAIGN-LENKILHEIVEFVVPVIAKAVGHELRLKAIVAASLQLRPNGKLYRIKVKVEAK 87
           F +I N  +++++ EI  + + V+++ +  EL+L+A+VAA++ L   GKLYR K++V+AK
Sbjct: 25  FRSIDNCAKDRVVVEIATWSLTVVSEKLQVELKLRAVVAAAIALFTKGKLYRFKIQVDAK 84

Query: 88  VDCIWLTKTYEADVFIPFFGPWECKSFHLC 117
            +C    +TY+ +V+IP  G WE +S  LC
Sbjct: 85  TNCGSSVQTYDVEVWIPLVGKWEVRSHRLC 114

[Close]

BLAST of CmUC01G014500 vs. ExPASy TrEMBL
Match: A0A5A7SHS8 (Iron-sulfur binding oxidoreductase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G002130 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.0e-08
Identity = 33/89 (37.08%), Postives = 56/89 (62.92%), Query Frame = 0


Query: 28  FEAIGN-LENKILHEIVEFVVPVIAKAVGHELRLKAIVAASLQLRPNGKLYRIKVKVEAK 87
           F AI N   +K++ +I  + + VIA     EL+L+ +V+A++ L   GKLYR+ ++ +AK
Sbjct: 25  FRAINNCATDKVVVQIATWTLTVIAAKHQIELKLRLVVSAAIALFTKGKLYRLTIQADAK 84

Query: 88  VDCIWLTKTYEADVFIPFFGPWECKSFHL 116
            +  W+  TY+ +V++P  GPWE +S  L
Sbjct: 85  TNSGWVVHTYDVEVWLPLVGPWEVRSHKL 113

The following BLAST results are available for this feature:

BLAST of CmUC01G014500 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645929.1	1.3e-09	38.89	hypothetical protein Csa_021384 [Cucumis sativus] >KGN48306.1 hypothetical prote...	[more]
KAA0025184.1	4.2e-08	37.08	Iron-sulfur binding oxidoreductase [Cucumis melo var. makuwa] >TYK07479.1 Iron-s...	[more]

BLAST of CmUC01G014500 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC01G014500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKM6	6.3e-10	38.89	Iron-sulfur binding oxidoreductase OS=Cucumis sativus OX=3659 GN=Csa_6G465000 PE...	[more]
A0A5A7SHS8	2.0e-08	37.08	Iron-sulfur binding oxidoreductase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]

BLAST of CmUC01G014500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.450.10		coord: 19..115 e-value: 1.5E-5 score: 27.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC01G014500.1	CmUC01G014500.1	mRNA