CmUC01G013030 (gene) Watermelon (USVL531) v1

Overview
NameCmUC01G013030
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
Descriptionubiquitin-like protein 5
LocationCmU531Chr01: 25545055 .. 25545381 (-)
RNA-Seq ExpressionCmUC01G013030
SyntenyCmUC01G013030
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCACCATACCCTTCCTTTCTTCTCTATATAAACCGCATCGAATCCCCAAATTTCTTCATATCGCGAAATTCTCTCCCTTCGTTAGGGTTTCAAGGGCGAAGATGATCGAGGTGGTGCTCAACGATCGTCTCGGGAAGAAGGTCCGGGTGAAGTGTAACGAGGACGATACGATTGGCGACTTGAAGAAGCTCGTCGCCGCTCAGACCGGTACCAGGGCAGAGAAAATCAGGATCCAAAAGTGGTACAACATCTACAAGGATCATATCACTCTCAAGGATTACGAGATTCACGACGGCATGGGTCTCGAGCTCTATTACAACTGA

mRNA sequence

ATGACCACCATACCCTTCCTTTCTTCTCTATATAAACCGCATCGAATCCCCAAATTTCTTCATATCGCGAAATTCTCTCCCTTCGTTAGGGTTTCAAGGGCGAAGATGATCGAGGTGGTGCTCAACGATCGTCTCGGGAAGAAGGTCCGGGTGAAGTGTAACGAGGACGATACGATTGGCGACTTGAAGAAGCTCGTCGCCGCTCAGACCGGTACCAGGGCAGAGAAAATCAGGATCCAAAAGTGGTACAACATCTACAAGGATCATATCACTCTCAAGGATTACGAGATTCACGACGGCATGGGTCTCGAGCTCTATTACAACTGA

Coding sequence (CDS)

ATGACCACCATACCCTTCCTTTCTTCTCTATATAAACCGCATCGAATCCCCAAATTTCTTCATATCGCGAAATTCTCTCCCTTCGTTAGGGTTTCAAGGGCGAAGATGATCGAGGTGGTGCTCAACGATCGTCTCGGGAAGAAGGTCCGGGTGAAGTGTAACGAGGACGATACGATTGGCGACTTGAAGAAGCTCGTCGCCGCTCAGACCGGTACCAGGGCAGAGAAAATCAGGATCCAAAAGTGGTACAACATCTACAAGGATCATATCACTCTCAAGGATTACGAGATTCACGACGGCATGGGTCTCGAGCTCTATTACAACTGA

Protein sequence

MTTIPFLSSLYKPHRIPKFLHIAKFSPFVRVSRAKMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDYEIHDGMGLELYYN
Homology
BLAST of CmUC01G013030 vs. NCBI nr
Match: KCW51380.1 (hypothetical protein EUGRSUZ_J00924, partial [Eucalyptus grandis])

HSP 1 Score: 156.0 bits (393), Expect = 1.8e-34
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = 0

Query: 29  VRVSRAKMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKD 88
           +RVS AKMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRA+KIRIQKWYNIYKD
Sbjct: 55  IRVS-AKMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKD 114

Query: 89  HITLKDYEIHDGMGLELYYN 109
           HITLKDYEIHDGMGLELYYN
Sbjct: 115 HITLKDYEIHDGMGLELYYN 133

BLAST of CmUC01G013030 vs. NCBI nr
Match: KAG6520004.1 (hypothetical protein ZIOFF_017033 [Zingiber officinale])

HSP 1 Score: 155.2 bits (391), Expect = 3.2e-34
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 0

Query: 33  RAKMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITL 92
           +AKMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRA+KIRIQKWYNIYKDHITL
Sbjct: 380 KAKMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITL 439

Query: 93  KDYEIHDGMGLELYYN 109
           KDYEIHDGMGLELYYN
Sbjct: 440 KDYEIHDGMGLELYYN 455

BLAST of CmUC01G013030 vs. NCBI nr
Match: CAA7058928.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 154.1 bits (388), Expect = 7.0e-34
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0

Query: 35  KMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKD 94
           KMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKD
Sbjct: 520 KMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKD 579

Query: 95  YEIHDGMGLELYYN 109
           YEIHDGMGLELYYN
Sbjct: 580 YEIHDGMGLELYYN 593

BLAST of CmUC01G013030 vs. NCBI nr
Match: XP_026416497.1 (ubiquitin-like protein 5 [Papaver somniferum])

HSP 1 Score: 153.7 bits (387), Expect = 9.2e-34
Identity = 74/81 (91.36%), Postives = 77/81 (95.06%), Query Frame = 0

Query: 28  FVRVSRAKMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYK 87
           F R S+AK IEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRA+KIRIQKWYN+YK
Sbjct: 22  FGRNSKAKKIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNVYK 81

Query: 88  DHITLKDYEIHDGMGLELYYN 109
           DHITL DYEIHDGMGLELYYN
Sbjct: 82  DHITLADYEIHDGMGLELYYN 102

BLAST of CmUC01G013030 vs. NCBI nr
Match: RWW43537.1 (hypothetical protein BHE74_00050784 [Ensete ventricosum])

HSP 1 Score: 153.7 bits (387), Expect = 9.2e-34
Identity = 72/76 (94.74%), Postives = 76/76 (100.00%), Query Frame = 0

Query: 33  RAKMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITL 92
           +AKMIEVVLNDRLGKKVRVKCN+DDTIGDLKKLVAAQTGTRA+KIRIQKWYN+YKDHITL
Sbjct: 30  KAKMIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRADKIRIQKWYNVYKDHITL 89

Query: 93  KDYEIHDGMGLELYYN 109
           KDYEIHDGMGLELYYN
Sbjct: 90  KDYEIHDGMGLELYYN 105

BLAST of CmUC01G013030 vs. ExPASy Swiss-Prot
Match: Q9FGZ9 (Ubiquitin-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=UBL5 PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 7.8e-36
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 0

Query: 36  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 95
           MIEVVLNDRLGKKVRVKCN+DDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY
Sbjct: 1   MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60

Query: 96  EIHDGMGLELYYN 109
           EIHDGMGLELYYN
Sbjct: 61  EIHDGMGLELYYN 73

BLAST of CmUC01G013030 vs. ExPASy Swiss-Prot
Match: Q3T0Z3 (Ubiquitin-like protein 5 OS=Bos taurus OX=9913 GN=UBL5 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 7.8e-28
Identity = 58/72 (80.56%), Postives = 64/72 (88.89%), Query Frame = 0

Query: 36  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 95
           MIEVV NDRLGKKVRVKCN DDTIGDLKKL+AAQTGTR  KI ++KWY I+KDH++L DY
Sbjct: 1   MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60

Query: 96  EIHDGMGLELYY 108
           EIHDGM LELYY
Sbjct: 61  EIHDGMNLELYY 72

BLAST of CmUC01G013030 vs. ExPASy Swiss-Prot
Match: Q9BZL1 (Ubiquitin-like protein 5 OS=Homo sapiens OX=9606 GN=UBL5 PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 7.8e-28
Identity = 58/72 (80.56%), Postives = 64/72 (88.89%), Query Frame = 0

Query: 36  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 95
           MIEVV NDRLGKKVRVKCN DDTIGDLKKL+AAQTGTR  KI ++KWY I+KDH++L DY
Sbjct: 1   MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60

Query: 96  EIHDGMGLELYY 108
           EIHDGM LELYY
Sbjct: 61  EIHDGMNLELYY 72

BLAST of CmUC01G013030 vs. ExPASy Swiss-Prot
Match: Q6EGX7 (Ubiquitin-like protein 5 OS=Mesocricetus auratus OX=10036 GN=UBL5 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 7.8e-28
Identity = 58/72 (80.56%), Postives = 64/72 (88.89%), Query Frame = 0

Query: 36  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 95
           MIEVV NDRLGKKVRVKCN DDTIGDLKKL+AAQTGTR  KI ++KWY I+KDH++L DY
Sbjct: 1   MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60

Query: 96  EIHDGMGLELYY 108
           EIHDGM LELYY
Sbjct: 61  EIHDGMNLELYY 72

BLAST of CmUC01G013030 vs. ExPASy Swiss-Prot
Match: Q9EPV8 (Ubiquitin-like protein 5 OS=Mus musculus OX=10090 GN=Ubl5 PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 7.8e-28
Identity = 58/72 (80.56%), Postives = 64/72 (88.89%), Query Frame = 0

Query: 36  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 95
           MIEVV NDRLGKKVRVKCN DDTIGDLKKL+AAQTGTR  KI ++KWY I+KDH++L DY
Sbjct: 1   MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60

Query: 96  EIHDGMGLELYY 108
           EIHDGM LELYY
Sbjct: 61  EIHDGMNLELYY 72

BLAST of CmUC01G013030 vs. ExPASy TrEMBL
Match: A0A059ADC7 (Ubiquitin-like domain-containing protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J00924 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 9.0e-35
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = 0

Query: 29  VRVSRAKMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKD 88
           +RVS AKMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRA+KIRIQKWYNIYKD
Sbjct: 55  IRVS-AKMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKD 114

Query: 89  HITLKDYEIHDGMGLELYYN 109
           HITLKDYEIHDGMGLELYYN
Sbjct: 115 HITLKDYEIHDGMGLELYYN 133

BLAST of CmUC01G013030 vs. ExPASy TrEMBL
Match: J3N5Z0 (Ubiquitin-like domain-containing protein OS=Oryza brachyantha OX=4533 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.2e-34
Identity = 75/79 (94.94%), Postives = 75/79 (94.94%), Query Frame = 0

Query: 30  RVSRAKMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDH 89
           RV   KMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTR EKIRIQKWYNIYKDH
Sbjct: 107 RVEEVKMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYNIYKDH 166

Query: 90  ITLKDYEIHDGMGLELYYN 109
           ITLKDYEIHDGMGLELYYN
Sbjct: 167 ITLKDYEIHDGMGLELYYN 185

BLAST of CmUC01G013030 vs. ExPASy TrEMBL
Match: A0A6D2L053 (Ubiquitin-like domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS46164 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.4e-34
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0

Query: 35  KMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKD 94
           KMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKD
Sbjct: 520 KMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKD 579

Query: 95  YEIHDGMGLELYYN 109
           YEIHDGMGLELYYN
Sbjct: 580 YEIHDGMGLELYYN 593

BLAST of CmUC01G013030 vs. ExPASy TrEMBL
Match: A0A3L6PNH3 (Ubiquitin-like protein 5 OS=Panicum miliaceum OX=4540 GN=C2845_PM18G00450 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 4.4e-34
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0

Query: 34  AKMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLK 93
           AKMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTR EKIRIQKWYNIYKDHITLK
Sbjct: 89  AKMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYNIYKDHITLK 148

Query: 94  DYEIHDGMGLELYYN 109
           DYEIHDGMGLELYYN
Sbjct: 149 DYEIHDGMGLELYYN 163

BLAST of CmUC01G013030 vs. ExPASy TrEMBL
Match: A0A176W1C7 (Ubiquitin-like domain-containing protein OS=Marchantia polymorpha subsp. ruderalis OX=1480154 GN=AXG93_3786s1220 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 5.8e-34
Identity = 75/83 (90.36%), Postives = 76/83 (91.57%), Query Frame = 0

Query: 26  SPFVRVSRAKMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNI 85
           S F R+   KMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWY I
Sbjct: 43  SRFARLEAGKMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYII 102

Query: 86  YKDHITLKDYEIHDGMGLELYYN 109
           YKDHITL DYEIHDGMGLELYYN
Sbjct: 103 YKDHITLADYEIHDGMGLELYYN 125

BLAST of CmUC01G013030 vs. TAIR 10
Match: AT5G42300.1 (ubiquitin-like protein 5 )

HSP 1 Score: 151.0 bits (380), Expect = 5.5e-37
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 0

Query: 36  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 95
           MIEVVLNDRLGKKVRVKCN+DDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY
Sbjct: 1   MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60

Query: 96  EIHDGMGLELYYN 109
           EIHDGMGLELYYN
Sbjct: 61  EIHDGMGLELYYN 73

BLAST of CmUC01G013030 vs. TAIR 10
Match: AT3G45180.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 146.4 bits (368), Expect = 1.4e-35
Identity = 70/73 (95.89%), Postives = 71/73 (97.26%), Query Frame = 0

Query: 36  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 95
           MIEVVLNDRLGKKVRVKCNE+DTIGDLKKLVAAQTGTR EKIRIQKWYNIYKDHI LKDY
Sbjct: 1   MIEVVLNDRLGKKVRVKCNEEDTIGDLKKLVAAQTGTRPEKIRIQKWYNIYKDHIPLKDY 60

Query: 96  EIHDGMGLELYYN 109
           EIHDGMGLELYYN
Sbjct: 61  EIHDGMGLELYYN 73

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KCW51380.11.8e-3496.25hypothetical protein EUGRSUZ_J00924, partial [Eucalyptus grandis][more]
KAG6520004.13.2e-3497.37hypothetical protein ZIOFF_017033 [Zingiber officinale][more]
CAA7058928.17.0e-34100.00unnamed protein product [Microthlaspi erraticum][more]
XP_026416497.19.2e-3491.36ubiquitin-like protein 5 [Papaver somniferum][more]
RWW43537.19.2e-3494.74hypothetical protein BHE74_00050784 [Ensete ventricosum][more]
Match NameE-valueIdentityDescription
Q9FGZ97.8e-3698.63Ubiquitin-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=UBL5 PE=3 SV=1[more]
Q3T0Z37.8e-2880.56Ubiquitin-like protein 5 OS=Bos taurus OX=9913 GN=UBL5 PE=3 SV=1[more]
Q9BZL17.8e-2880.56Ubiquitin-like protein 5 OS=Homo sapiens OX=9606 GN=UBL5 PE=1 SV=1[more]
Q6EGX77.8e-2880.56Ubiquitin-like protein 5 OS=Mesocricetus auratus OX=10036 GN=UBL5 PE=3 SV=1[more]
Q9EPV87.8e-2880.56Ubiquitin-like protein 5 OS=Mus musculus OX=10090 GN=Ubl5 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A059ADC79.0e-3596.25Ubiquitin-like domain-containing protein (Fragment) OS=Eucalyptus grandis OX=711... [more]
J3N5Z01.2e-3494.94Ubiquitin-like domain-containing protein OS=Oryza brachyantha OX=4533 PE=4 SV=1[more]
A0A6D2L0533.4e-34100.00Ubiquitin-like domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN... [more]
A0A3L6PNH34.4e-3498.67Ubiquitin-like protein 5 OS=Panicum miliaceum OX=4540 GN=C2845_PM18G00450 PE=4 S... [more]
A0A176W1C75.8e-3490.36Ubiquitin-like domain-containing protein OS=Marchantia polymorpha subsp. ruderal... [more]
Match NameE-valueIdentityDescription
AT5G42300.15.5e-3798.63ubiquitin-like protein 5 [more]
AT3G45180.11.4e-3595.89Ubiquitin-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000626Ubiquitin-like domainPFAMPF00240ubiquitincoord: 46..105
e-value: 1.0E-6
score: 28.4
IPR000626Ubiquitin-like domainPROSITEPS50053UBIQUITIN_2coord: 37..108
score: 10.266311
NoneNo IPR availableGENE3D3.10.20.90coord: 18..108
e-value: 5.2E-31
score: 108.4
NoneNo IPR availablePANTHERPTHR13042:SF13UBIQUITIN-LIKE PROTEIN 5coord: 32..108
NoneNo IPR availableCDDcd01791Ubl_UBL5coord: 36..106
e-value: 6.34357E-51
score: 153.243
IPR039732Ubiquitin-like modifier Hub1/Ubl5PANTHERPTHR13042UBIQUITIN-LIKE PROTEIN 5coord: 32..108
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 32..108

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC01G013030.1CmUC01G013030.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006464 cellular protein modification process
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
molecular_function GO:0005515 protein binding
molecular_function GO:0031386 protein tag