CmUC01G012380 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC01G012380
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Reverse transcriptase
Location	CmU531Chr01: 24715610 .. 24716119 (+)
RNA-Seq Expression	CmUC01G012380
Synteny	CmUC01G012380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGTGGGCAGACATGAAGCGCAGGGCCCTTGAGTTCCAATCTGGAGACAAAGTACTGATTAAGTTGCGCCCGAAACAGTTTCGGTTTCGAGGACAAAGAGGCCAAAGGGTTGTGAGGAAATACGAAGGACCAGTGGATGTGATTGAGAAAGTCGGAAAGGCCTCATATCGGGTTCAGTTACCCTCATGGATGAAGATTCATCCTGTCATACATGTGAGTAACTTGAAGCCTTACCATCCTGACCCCAACGACGAACGACGTAATGTGGTGACTCGCCCTCCCGTCACTATGAAGAACCCAACAGAAAAAGTGATCAATGAGATACTTGCTAACAAAACCCGCCGCGTGGGGAGACCAAGACGAGATCTGAAAGAATTCCTGGTGAAGTGGAGAGACCTCCTAGAAGAAGAGATCAGTTGGGAGCGCGCTGAAGACCTGCAGTCAGCTACCGTTCAAATTGCTGAGTTCGAGCAGAGACTATTGACAGGGACGTCAACCAATTAA

mRNA sequence

ATGAAGAAGTGGGCAGACATGAAGCGCAGGGCCCTTGAGTTCCAATCTGGAGACAAAGTACTGATTAAGTTGCGCCCGAAACAGTTTCGGTTTCGAGGACAAAGAGGCCAAAGGGTTGTGAGGAAATACGAAGGACCAGTGGATGTGATTGAGAAAGTCGGAAAGGCCTCATATCGGGTTCAGTTACCCTCATGGATGAAGATTCATCCTGTCATACATGTGAGTAACTTGAAGCCTTACCATCCTGACCCCAACGACGAACGACGTAATGTGGTGACTCGCCCTCCCGTCACTATGAAGAACCCAACAGAAAAAGTGATCAATGAGATACTTGCTAACAAAACCCGCCGCGTGGGGAGACCAAGACGAGATCTGAAAGAATTCCTGGTGAAGTGGAGAGACCTCCTAGAAGAAGAGATCAGTTGGGAGCGCGCTGAAGACCTGCAGTCAGCTACCGTTCAAATTGCTGAGTTCGAGCAGAGACTATTGACAGGGACGTCAACCAATTAA

Coding sequence (CDS)

ATGAAGAAGTGGGCAGACATGAAGCGCAGGGCCCTTGAGTTCCAATCTGGAGACAAAGTACTGATTAAGTTGCGCCCGAAACAGTTTCGGTTTCGAGGACAAAGAGGCCAAAGGGTTGTGAGGAAATACGAAGGACCAGTGGATGTGATTGAGAAAGTCGGAAAGGCCTCATATCGGGTTCAGTTACCCTCATGGATGAAGATTCATCCTGTCATACATGTGAGTAACTTGAAGCCTTACCATCCTGACCCCAACGACGAACGACGTAATGTGGTGACTCGCCCTCCCGTCACTATGAAGAACCCAACAGAAAAAGTGATCAATGAGATACTTGCTAACAAAACCCGCCGCGTGGGGAGACCAAGACGAGATCTGAAAGAATTCCTGGTGAAGTGGAGAGACCTCCTAGAAGAAGAGATCAGTTGGGAGCGCGCTGAAGACCTGCAGTCAGCTACCGTTCAAATTGCTGAGTTCGAGCAGAGACTATTGACAGGGACGTCAACCAATTAA

Protein sequence

MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMKNPTEKVINEILANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTSTN

Homology

[Close]

BLAST of CmUC01G012380 vs. NCBI nr
Match: XP_038882325.1 (uncharacterized protein LOC120073574 [Benincasa hispida])

HSP 1 Score: 248.1 bits (632), Expect = 5.6e-62
Identity = 120/160 (75.00%), Postives = 140/160 (87.50%), Query Frame = 0


Query: 1   MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRV 60
           MKKWAD K RALEFQ+GDKVLIKLRP+QFRFRGQ+ QR+VRKYEGPV+VIEKVG+ SYRV
Sbjct: 41  MKKWADKKWRALEFQAGDKVLIKLRPEQFRFRGQKDQRLVRKYEGPVEVIEKVGRTSYRV 100

Query: 61  QLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMKNPTEKVINEILANKTRRVGR 120
           QLPSWMKIHPVIHVS LKPYHPDP DE+RN++ RPPVTMK+  EK + +IL  +TRR+GR
Sbjct: 101 QLPSWMKIHPVIHVSILKPYHPDPEDEQRNMLRRPPVTMKSSAEKEVAQILDKRTRRIGR 160

Query: 121 PRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQ 161
           PRR+L EFLVKW+DL +EEISWERA+D ++A   IA FEQ
Sbjct: 161 PRRELTEFLVKWKDLPDEEISWERAKDSKNAAPAIANFEQ 200

[Close]

BLAST of CmUC01G012380 vs. NCBI nr
Match: XP_038885809.1 (uncharacterized protein LOC120076104 [Benincasa hispida])

HSP 1 Score: 224.6 bits (571), Expect = 6.6e-55
Identity = 108/141 (76.60%), Postives = 125/141 (88.65%), Query Frame = 0


Query: 1   MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRV 60
           MKKWAD KRRALEFQ+GDKVLIKLRP++FRFRGQR QR+VRKYEGPV+VIEKVG+ SYRV
Sbjct: 33  MKKWADKKRRALEFQAGDKVLIKLRPEKFRFRGQRDQRLVRKYEGPVEVIEKVGRTSYRV 92

Query: 61  QLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMKNPTEKVINEILANKTRRVGR 120
           QLPSWMKIHPVIHVS LKPYH DP DE+RN++ RPPVTMK+  EK + +IL  + RR+GR
Sbjct: 93  QLPSWMKIHPVIHVSILKPYHSDPEDEQRNMLRRPPVTMKSSAEKEVAQILDKRARRIGR 152

Query: 121 PRRDLKEFLVKWRDLLEEEIS 142
           PRR+L EFLVKW+DL +EEIS
Sbjct: 153 PRRELTEFLVKWKDLPDEEIS 173

[Close]

BLAST of CmUC01G012380 vs. NCBI nr
Match: KAA0067557.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 213.0 bits (541), Expect = 2.0e-51
Identity = 105/168 (62.50%), Postives = 132/168 (78.57%), Query Frame = 0


Query: 1    MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRV 60
            MKKWAD KRR LEF++GD+VLIKLRP+Q RFRG++ QR+VRKYEGPV+V++KVG  SYRV
Sbjct: 1415 MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRV 1474

Query: 61   QLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMKNPTEKVINEILANKTRRVGR 120
             LP+WMKI+PVIHVSNLKPYH D  D +RNVVTRP + +    +K + EILA + RR  R
Sbjct: 1475 ALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRR 1534

Query: 121  PRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST 169
            P R + E+LVKW++L  EE SWER EDL++   +I +F+ R LTGTST
Sbjct: 1535 PARRIHEYLVKWKNLPVEETSWERVEDLEAWKQKIEDFKLRQLTGTST 1582

[Close]

BLAST of CmUC01G012380 vs. NCBI nr
Match: TYK19637.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK20902.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK28777.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 213.0 bits (541), Expect = 2.0e-51
Identity = 105/168 (62.50%), Postives = 132/168 (78.57%), Query Frame = 0


Query: 1   MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRV 60
           MKKWAD KRR LEF++GD+VLIKLRP+Q RFRG++ QR+VRKYEGPV+V++KVG  SYRV
Sbjct: 91  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRV 150

Query: 61  QLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMKNPTEKVINEILANKTRRVGR 120
            LP+WMKI+PVIHVSNLKPYH D  D +RNVVTRP + +    +K + EILA + RR  R
Sbjct: 151 ALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRR 210

Query: 121 PRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST 169
           P R + E+LVKW++L  EE SWER EDL++   +I +F+ R LTGTST
Sbjct: 211 PARRIHEYLVKWKNLPVEETSWERVEDLEAWKQKIEDFKLRQLTGTST 258

[Close]

BLAST of CmUC01G012380 vs. NCBI nr
Match: KAA0037220.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcriptase [Cucumis melo var. makuwa] >TYJ99001.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK01698.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK02882.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 213.0 bits (541), Expect = 2.0e-51
Identity = 105/168 (62.50%), Postives = 132/168 (78.57%), Query Frame = 0


Query: 1    MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRV 60
            MKKWAD KRR LEF++GD+VLIKLRP+Q RFRG++ QR+VRKYEGPV+V++KVG  SYRV
Sbjct: 1419 MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRV 1478

Query: 61   QLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMKNPTEKVINEILANKTRRVGR 120
             LP+WMKI+PVIHVSNLKPYH D  D +RNVVTRP + +    +K + EILA + RR  R
Sbjct: 1479 ALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRR 1538

Query: 121  PRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST 169
            P R + E+LVKW++L  EE SWER EDL++   +I +F+ R LTGTST
Sbjct: 1539 PARRIHEYLVKWKNLPVEETSWERVEDLEAWKQKIEDFKLRQLTGTST 1586

[Close]

BLAST of CmUC01G012380 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 9.7e-52
Identity = 105/168 (62.50%), Postives = 132/168 (78.57%), Query Frame = 0


Query: 1    MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRV 60
            MKKWAD KRR LEF++GD+VLIKLRP+Q RFRG++ QR+VRKYEGPV+V++KVG  SYRV
Sbjct: 1419 MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRV 1478

Query: 61   QLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMKNPTEKVINEILANKTRRVGR 120
             LP+WMKI+PVIHVSNLKPYH D  D +RNVVTRP + +    +K + EILA + RR  R
Sbjct: 1479 ALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRR 1538

Query: 121  PRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST 169
            P R + E+LVKW++L  EE SWER EDL++   +I +F+ R LTGTST
Sbjct: 1539 PARRIHEYLVKWKNLPVEETSWERVEDLEAWKQKIEDFKLRQLTGTST 1586

[Close]

BLAST of CmUC01G012380 vs. ExPASy TrEMBL
Match: A0A5D3DBE0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00240 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 9.7e-52
Identity = 105/168 (62.50%), Postives = 132/168 (78.57%), Query Frame = 0


Query: 1   MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRV 60
           MKKWAD KRR LEF++GD+VLIKLRP+Q RFRG++ QR+VRKYEGPV+V++KVG  SYRV
Sbjct: 91  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRV 150

Query: 61  QLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMKNPTEKVINEILANKTRRVGR 120
            LP+WMKI+PVIHVSNLKPYH D  D +RNVVTRP + +    +K + EILA + RR  R
Sbjct: 151 ALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRR 210

Query: 121 PRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST 169
           P R + E+LVKW++L  EE SWER EDL++   +I +F+ R LTGTST
Sbjct: 211 PARRIHEYLVKWKNLPVEETSWERVEDLEAWKQKIEDFKLRQLTGTST 258

[Close]

BLAST of CmUC01G012380 vs. ExPASy TrEMBL
Match: A0A5A7UXR6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005550 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 9.7e-52
Identity = 105/168 (62.50%), Postives = 132/168 (78.57%), Query Frame = 0


Query: 1    MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRV 60
            MKKWAD KRR LEF++GD+VLIKLRP+Q RFRG++ QR+VRKYEGPV+V++KVG  SYRV
Sbjct: 1419 MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRV 1478

Query: 61   QLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMKNPTEKVINEILANKTRRVGR 120
             LP+WMKI+PVIHVSNLKPYH D  D +RNVVTRP + +    +K + EILA + RR  R
Sbjct: 1479 ALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRR 1538

Query: 121  PRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST 169
            P R + E+LVKW++L  EE SWER EDL++   +I +F+ R LTGTST
Sbjct: 1539 PARRIHEYLVKWKNLPVEETSWERVEDLEAWKQKIEDFKLRQLTGTST 1586

[Close]

BLAST of CmUC01G012380 vs. ExPASy TrEMBL
Match: A0A5A7T0E2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001310 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 9.7e-52
Identity = 105/168 (62.50%), Postives = 132/168 (78.57%), Query Frame = 0


Query: 1    MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRV 60
            MKKWAD KRR LEF++GD+VLIKLRP+Q RFRG++ QR+VRKYEGPV+V++KVG  SYRV
Sbjct: 1419 MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRV 1478

Query: 61   QLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMKNPTEKVINEILANKTRRVGR 120
             LP+WMKI+PVIHVSNLKPYH D  D +RNVVTRP + +    +K + EILA + RR  R
Sbjct: 1479 ALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRR 1538

Query: 121  PRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST 169
            P R + E+LVKW++L  EE SWER EDL++   +I +F+ R LTGTST
Sbjct: 1539 PARRIHEYLVKWKNLPMEETSWERVEDLEAWKQKIEDFKLRQLTGTST 1586

[Close]

BLAST of CmUC01G012380 vs. ExPASy TrEMBL
Match: A0A5D3BYE6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00260 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 9.7e-52
Identity = 105/168 (62.50%), Postives = 132/168 (78.57%), Query Frame = 0


Query: 1    MKKWADMKRRALEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRV 60
            MKKWAD KRR LEF++GD+VLIKLRP+Q RFRG++ QR+VRKYEGPV+V++KVG  SYRV
Sbjct: 1419 MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRV 1478

Query: 61   QLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMKNPTEKVINEILANKTRRVGR 120
             LP+WMKI+PVIHVSNLKPYH D  D +RNVVTRP + +    +K + EILA + RR  R
Sbjct: 1479 ALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRR 1538

Query: 121  PRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST 169
            P R + E+LVKW++L  EE SWER EDL++   +I +F+ R LTGTST
Sbjct: 1539 PARRIHEYLVKWKNLPVEETSWERVEDLEAWKQKIEDFKLRQLTGTST 1586

The following BLAST results are available for this feature:

BLAST of CmUC01G012380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882325.1	5.6e-62	75.00	uncharacterized protein LOC120073574 [Benincasa hispida]	[more]
XP_038885809.1	6.6e-55	76.60	uncharacterized protein LOC120076104 [Benincasa hispida]	[more]
KAA0067557.1	2.0e-51	62.50	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK19637.1	2.0e-51	62.50	reverse transcriptase [Cucumis melo var. makuwa] >TYK20902.1 reverse transcripta...	[more]
KAA0037220.1	2.0e-51	62.50	reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcripta...	[more]

BLAST of CmUC01G012380 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC01G012380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C4R1	9.7e-52	62.50	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5D3DBE0	9.7e-52	62.50	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24...	[more]
A0A5A7UXR6	9.7e-52	62.50	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22...	[more]
A0A5A7T0E2	9.7e-52	62.50	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20...	[more]
A0A5D3BYE6	9.7e-52	62.50	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]

BLAST of CmUC01G012380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000953	Chromo/chromo shadow domain	SMART	SM00298	chromo_7	coord: 104..163 e-value: 6.7E-4 score: 29.0
IPR000953	Chromo/chromo shadow domain	PROSITE	PS50013	CHROMO_2	coord: 101..169 score: 11.924001
IPR023780	Chromo domain	PFAM	PF00385	Chromo	coord: 106..161 e-value: 2.1E-9 score: 37.1
None	No IPR available	GENE3D	2.40.50.40		coord: 97..162 e-value: 1.2E-9 score: 39.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..98
None	No IPR available	CDD	cd00024	CD_CSD	coord: 120..160 e-value: 4.94144E-6 score: 40.1529
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 66..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC01G012380.1	CmUC01G012380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process