CmUC01G009880 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC01G009880
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Retrotransposon protein
Location	CmU531Chr01: 13234261 .. 13234741 (-)
RNA-Seq Expression	CmUC01G009880
Synteny	CmUC01G009880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTAGTAACGCATGTAGCGGATTCGGTTGGAACGAAGAATTCAAGTGTGTGGATGCAGAGAAGGAGGTGTTTGACGCATGGGTTCGAGTAACATAATACATTACAATATAGTATCATAATACATTACAGTATTTTATCATGATTGGAGTATTTTTTCTAACATAATATATATCCATTTATAGTCCCATCCTAACTCAAAGGGTATAAGGCACAAACCCTTTCTGCACTATGATGAACTTTCCATTGTATTTGGTAAGGATAGAGCTACTGGTTAGAATTGTGTGACTCCTAATGATCTATGCTCTGAAAATAACGCATGGAAGATGTTAGGTTGGGATCCCAGGAGAATGAGCTACCAGGAAATCGACCGACTAGTAACATACCGACGTTTGATTGCATGGATGACAGTTTACCAGATACACCTACCAGTAGGCAACCTGGATCGAGCAACGCTTCAAGAGGAACCAAGCGAAATTAA

mRNA sequence

ATGCTTAGTAACGCATGTAGCGGATTCGGTTGGAACGAAGAATTCAAGTGTGTGGATGCAGAGAAGGAGGTGTTTGACGCATGGGTTCGATCCCATCCTAACTCAAAGGGTATAAGGCACAAACCCTTTCTGCACTATGATGAACTTTCCATTGTATTTGGTAAGGATAGAGCTACTGGAAATCGACCGACTAGTAACATACCGACGTTTGATTGCATGGATGACAGTTTACCAGATACACCTACCAGTAGGCAACCTGGATCGAGCAACGCTTCAAGAGGAACCAAGCGAAATTAA

Coding sequence (CDS)

ATGCTTAGTAACGCATGTAGCGGATTCGGTTGGAACGAAGAATTCAAGTGTGTGGATGCAGAGAAGGAGGTGTTTGACGCATGGGTTCGATCCCATCCTAACTCAAAGGGTATAAGGCACAAACCCTTTCTGCACTATGATGAACTTTCCATTGTATTTGGTAAGGATAGAGCTACTGGAAATCGACCGACTAGTAACATACCGACGTTTGATTGCATGGATGACAGTTTACCAGATACACCTACCAGTAGGCAACCTGGATCGAGCAACGCTTCAAGAGGAACCAAGCGAAATTAA

Protein sequence

MLSNACSGFGWNEEFKCVDAEKEVFDAWVRSHPNSKGIRHKPFLHYDELSIVFGKDRATGNRPTSNIPTFDCMDDSLPDTPTSRQPGSSNASRGTKRN

Homology

[Close]

BLAST of CmUC01G009880 vs. NCBI nr
Match: XP_038877524.1 (uncharacterized protein LOC120069782 [Benincasa hispida])

HSP 1 Score: 124.0 bits (310), Expect = 7.1e-25
Identity = 67/128 (52.34%), Postives = 77/128 (60.16%), Query Frame = 0


Query: 1   MLSNACSGFGWNEEFKCVDAEKEVFDAWVRSHPNSKGIRHKPFLHYDELSIVFGKDRATG 60
           MLSNACSGF WN+EFKC++ EKEVFD    SHPN+KG++HKPFL+YDELSIVFGKDRAT 
Sbjct: 18  MLSNACSGFDWNDEFKCMEVEKEVFD----SHPNAKGLKHKPFLYYDELSIVFGKDRATS 77

Query: 61  -------------------------------NRPTSNIPTFDCMDDSLPDTPTSRQPGSS 98
                                          + P  NI T D M++  PDTP SR  GSS
Sbjct: 78  EGSETPYDQASATDEHLEDIRLGSQVNEQQESIPDMNITTVDGMNEVFPDTPISRYTGSS 137

[Close]

BLAST of CmUC01G009880 vs. NCBI nr
Match: XP_038889264.1 (uncharacterized protein At2g29880-like [Benincasa hispida])

HSP 1 Score: 115.9 bits (289), Expect = 1.9e-22
Identity = 52/79 (65.82%), Postives = 57/79 (72.15%), Query Frame = 0


Query: 1   MLSNACSGFGWNEEFKCVDAEKEVFDAWVRSHPNSKGIRHKPFLHYDELSIVFGKDRATG 60
           MLSNAC+GFGWN+EFKCV  EKEVFD WV SHPN KG+RHKPF H DELSIVFGKDRAT 
Sbjct: 82  MLSNACNGFGWNDEFKCVQVEKEVFDVWVWSHPNVKGLRHKPFPHCDELSIVFGKDRATS 141

Query: 61  NRPTSNIPTFDCMDDSLPD 80
               +        D+ L D
Sbjct: 142 EGSKTPFDQASATDEHLED 160

[Close]

BLAST of CmUC01G009880 vs. NCBI nr
Match: XP_038887032.1 (uncharacterized protein LOC120077200 [Benincasa hispida])

HSP 1 Score: 114.4 bits (285), Expect = 5.6e-22
Identity = 52/79 (65.82%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 1  MLSNACSGFGWNEEFKCVDAEKEVFDAWVRSHPNSKGIRHKPFLHYDELSIVFGKDRATG 60
          MLSNA SGFGWN+EFK V+ EKEVFD WVR HPN+KG+RHKPF HYDELSIVFGKDRA G
Sbjct: 1  MLSNAYSGFGWNDEFKYVEVEKEVFDVWVRFHPNAKGLRHKPFPHYDELSIVFGKDRAIG 60

Query: 61 NRPTSNIPTFDCMDDSLPD 80
              +        D+ L D
Sbjct: 61 EGSDTPYDQASATDEHLED 79

[Close]

BLAST of CmUC01G009880 vs. NCBI nr
Match: XP_038896734.1 (uncharacterized protein At2g29880-like [Benincasa hispida])

HSP 1 Score: 114.0 bits (284), Expect = 7.3e-22
Identity = 46/60 (76.67%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1   MLSNACSGFGWNEEFKCVDAEKEVFDAWVRSHPNSKGIRHKPFLHYDELSIVFGKDRATG 60
           MLSNAC+ FGWN+EFKCV+ EKEVFD WV+SHPN+KG+RHKP  HY+ELSI+FGKD ATG
Sbjct: 79  MLSNACNEFGWNDEFKCVEVEKEVFDVWVQSHPNAKGLRHKPLPHYEELSIIFGKDMATG 138

[Close]

BLAST of CmUC01G009880 vs. NCBI nr
Match: KAA0052286.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK01852.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 104.0 bits (258), Expect = 7.6e-19
Identity = 53/109 (48.62%), Postives = 68/109 (62.39%), Query Frame = 0


Query: 1   MLSNACSGFGWNEEFKCVDAEKEVFDAWVRSHPNSKGIRHKPFLHYDELSIVFGKDRATG 60
           M   ACSGFGWN+E KC+ AEKE+FD WVRSHP +KG+ +KPFL+YDEL+ VFG+DRATG
Sbjct: 53  MRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPFLYYDELTYVFGRDRATG 112

Query: 61  -----------NRPTSNIPTFDCMDDSLPDTPTSRQPGSSNASRGTKRN 99
                      N P      FD  D++    P +   GS    RG++R+
Sbjct: 113 RFAETFADVESNEPGGGYDRFDMGDENEEFLPVTGSSGSKR-KRGSQRD 160

[Close]

BLAST of CmUC01G009880 vs. ExPASy TrEMBL
Match: A0A5A7UDL5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G001010 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.7e-19
Identity = 53/109 (48.62%), Postives = 68/109 (62.39%), Query Frame = 0


Query: 1   MLSNACSGFGWNEEFKCVDAEKEVFDAWVRSHPNSKGIRHKPFLHYDELSIVFGKDRATG 60
           M   ACSGFGWN+E KC+ AEKE+FD WVRSHP +KG+ +KPFL+YDEL+ VFG+DRATG
Sbjct: 53  MRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPFLYYDELTYVFGRDRATG 112

Query: 61  -----------NRPTSNIPTFDCMDDSLPDTPTSRQPGSSNASRGTKRN 99
                      N P      FD  D++    P +   GS    RG++R+
Sbjct: 113 RFAETFADVESNEPGGGYDRFDMGDENEEFLPVTGSSGSKR-KRGSQRD 160

[Close]

BLAST of CmUC01G009880 vs. ExPASy TrEMBL
Match: A0A1S3CTN6 (uncharacterized protein LOC103504332 OS=Cucumis melo OX=3656 GN=LOC103504332 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 4.8e-19
Identity = 49/83 (59.04%), Postives = 60/83 (72.29%), Query Frame = 0


Query: 6   CSGFGWNEEFKCVDAEKEVFDAWVRSHPNSKGIRHKPFLHYDELSIVFGKDRATGNRPTS 65
           CSGFGWN+E KC+ AEKEVFD WV+SHP +KG+ +K F+HYDELS VFGKDRATG R  S
Sbjct: 84  CSGFGWNDEKKCIVAEKEVFDDWVKSHPTAKGLLNKSFVHYDELSYVFGKDRATGGRAES 143

Query: 66  -------NIPTFDCM-DDSLPDT 81
                  + P +D    D++PDT
Sbjct: 144 FADIGSNDPPGYDAFAADAMPDT 166

[Close]

BLAST of CmUC01G009880 vs. ExPASy TrEMBL
Match: A0A5A7VBC5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1290G00070 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 8.2e-19
Identity = 50/88 (56.82%), Postives = 62/88 (70.45%), Query Frame = 0


Query: 1   MLSNACSGFGWNEEFKCVDAEKEVFDAWVRSHPNSKGIRHKPFLHYDELSIVFGKDRATG 60
           M    CSGFGWN+E KC+ AEKEVFD WV+SHP +KG+ +K F HYDELS VFGKDRATG
Sbjct: 54  MCGPMCSGFGWNDENKCIVAEKEVFDDWVKSHPAAKGLLNKSFFHYDELSYVFGKDRATG 113

Query: 61  NRPTS--NIPTFDCMD------DSLPDT 81
           +R  S  N+ + D  +      D++PDT
Sbjct: 114 DRVESFANVRSNDPAEYDAFATDAVPDT 141

[Close]

BLAST of CmUC01G009880 vs. ExPASy TrEMBL
Match: A0A5D3CIF5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold107G00370 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.1e-18
Identity = 50/88 (56.82%), Postives = 62/88 (70.45%), Query Frame = 0


Query: 1   MLSNACSGFGWNEEFKCVDAEKEVFDAWVRSHPNSKGIRHKPFLHYDELSIVFGKDRATG 60
           M    CSGFGWN+E KC+ AEKEVFD WV+SHP +KG+ +K FLHYDELS VFGK RATG
Sbjct: 54  MCGPMCSGFGWNDENKCIVAEKEVFDDWVKSHPAAKGLLNKSFLHYDELSYVFGKYRATG 113

Query: 61  NRPTS--NIPTFDCMD------DSLPDT 81
           +R  S  N+ + D  +      D++PDT
Sbjct: 114 DRVESFANVRSNDPAEYDAFATDAVPDT 141

[Close]

BLAST of CmUC01G009880 vs. ExPASy TrEMBL
Match: A0A5D3C1M0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00570 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 5.3e-18
Identity = 50/92 (54.35%), Postives = 62/92 (67.39%), Query Frame = 0


Query: 6   CSGFGWNEEFKCVDAEKEVFDAWVRSHPNSKGIRHKPFLHYDELSIVFGKDRATGNRPTS 65
           CSGFGWN+E KC+  EKE+FD WV+SHP +KG+ +K F+HYDELS VFGKDRATG R  S
Sbjct: 88  CSGFGWNDEKKCIVVEKELFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAES 147

Query: 66  -------NIPTFDC-MDDSLPDT--PTSRQPG 88
                  + P +D    D++PDT  P    PG
Sbjct: 148 FADIGSNDPPGYDAGAADAMPDTDFPPMYSPG 179

[Close]

BLAST of CmUC01G009880 vs. TAIR 10
Match: AT1G30140.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27260.1); Has 313 Blast hits to 256 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 295; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 52.8 bits (125), Expect = 1.9e-07
Identity = 23/60 (38.33%), Postives = 37/60 (61.67%), Query Frame = 0


Query: 2   LSNACSGFGWNEEFKCVDAEKEVFDAWVRSHPNSKGIRHKPFLHYDELSIVFGKDRATGN 61
           L    SGFGW+ E K   A  EV+  ++++HPN K ++ +   H+++L I+FG   ATG+
Sbjct: 83  LKRFSSGFGWDPETKKFTAPDEVWRDYLKAHPNHKHMQTESIDHFEDLQIIFGDVVATGS 142

The following BLAST results are available for this feature:

BLAST of CmUC01G009880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877524.1	7.1e-25	52.34	uncharacterized protein LOC120069782 [Benincasa hispida]	[more]
XP_038889264.1	1.9e-22	65.82	uncharacterized protein At2g29880-like [Benincasa hispida]	[more]
XP_038887032.1	5.6e-22	65.82	uncharacterized protein LOC120077200 [Benincasa hispida]	[more]
XP_038896734.1	7.3e-22	76.67	uncharacterized protein At2g29880-like [Benincasa hispida]	[more]
KAA0052286.1	7.6e-19	48.62	retrotransposon protein [Cucumis melo var. makuwa] >TYK01852.1 retrotransposon p...	[more]

BLAST of CmUC01G009880 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC01G009880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UDL5	3.7e-19	48.62	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CTN6	4.8e-19	59.04	uncharacterized protein LOC103504332 OS=Cucumis melo OX=3656 GN=LOC103504332 PE=...	[more]
A0A5A7VBC5	8.2e-19	56.82	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CIF5	3.1e-18	56.82	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3C1M0	5.3e-18	54.35	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CmUC01G009880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G30140.1	1.9e-07	38.33	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..98
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 1..62
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC01G009880.1	CmUC01G009880.1	mRNA