CmUC01G009560 (gene) Watermelon (USVL531) v1

Overview
NameCmUC01G009560
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionReverse transcriptase
LocationCmU531Chr01: 12269533 .. 12270843 (+)
RNA-Seq ExpressionCmUC01G009560
SyntenyCmUC01G009560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCGTGAGTGAACATAAATCGAACACACCACCCACTGTGGAATCAAAAGACTCATCTGTGCATTTAAGATATGTCTTTCTAGGAGAGTCTTCTACTTATCCAGTCATAATTTCTTCAAAATTGAATGAAGTATACGAGGCAAAATTATTAAGAGTCTTGCAGGAGCATGAGTGAGCTTTAGGGCGGTGATCAATTAGCGATTTGAAAGGTATCAGTCCATCTATTGTGATGCACAAAATACTAGTGGATGATTCCTATAGTCCTTCAATTGAGCATCGGAGAAGGCTTAATCCGACAATGAAAGAGGTAGTAAAGGCCGAAGTTCTTAAATTGCTAAATGCAAGAATTATTTATGCTATATATGATAGTTTCTTGGTGAGTCTAGTGCAGGTAGTACTAAAAGAAGGGTGGGAAGACAGTAGTGAAAAATGAGAATAATGAAAGTGTTCCCACCAGAATGGTGTCACACCCCCTTCTAGATTAATCTCTTTAACCCAAAAGAAGGTGTAAAGACAACAAATATCACCCTTTTGTGACGCTTACTGCCTGTCTCATAATATTCTCATACAATCACCTATACCAAAGCTTAAGAAGCAAGTATGGAACAACCAACAATTCTTTTAAACAATTATACAAGTCCATATTACAACATATTTTGTAGCCCAATTGTATCTGGTCAAAGAAAAACTATCCTATGCATACCTCGACTGTAAGCCCTACCTTCATTCCCAAGAACTTAACTTTCTTGGGAGAGTTGGCGAGCAAGTAGGCGGGTAGTTGAGATGGGAAGTAGCCAAGAGCCTTGTTATGAAATAATCGAGTGGTGTATTATAGGTGTGGCTGGCAAGAAAATTGGCTAAGTGTTGGAGCATGTGTTTAAGACCTTGAGTAGTCGAGCCACCAAAAGTGTGAGTGATGCGGGCTTAGAGGATGGGCTGAAGGATGCGTCTTTCTTGGTGAAGGATGCGTCCATAGTGAGTTGGTTGAAGGCTTTTGACGCATTGCTTGATGGGCAAGTTGGGCTAGGCGTCCATGGCTTGGATGCGTTGGTTGAGGTAGTAAGAGGGCATGGTACATTGAGGCTATATGTCCAAGGAAGGCTTGTGAGGCTGAAGCATGGGGCAATGCGTCCAAGTCAACAACCATCAGCCAAGGGGTTGTGTGCAATGGATAGCTGAGAAGACTAGGTTGTACGTGCAGCCAAGCTAAACCAGTGGCCGAAAGTAAGAATCTATTGAGGTTATTTTGTGTTTTGCACTCCCAGGAGGTGGGCTAACACGCTTCCGGCTATGCGACCATGCATGCTGA

mRNA sequence

ATGTCCGTGAGTGAACATAAATCGAACACACCACCCACTGTGGAATCAAAAGACTCATCTGTGCATTTAAGATATGTCTTTCTAGGAGAGTCTTCTACTTATCCAGTCATAATTTCTTCAAAATTGAATGAAGTATACGAGGCAAAATTATTAAGAGTCTTGCAGGAGCATGATCCATCTATTGTGATGCACAAAATACTAGTGGATGATTCCTATAGTCCTTCAATTGAGCATCGGAGAAGGCTTAATCCGACAATGAAAGAGGTAGTAAAGGCCGAAGTTCTTAAATTGCTAAATGCAAGAATTATTTATGCTATATATGATAGTTTCTTGGTGAGTCTAGTGCAGATTAATCTCTTTAACCCAAAAGAAGGTGTAAAGACAACAAATATCACCCTTTTTAGGCGGGTAGTTGAGATGGGAAGTAGCCAAGAGCCTTGTTATGAAATAATCGAGTGGTGTATTATAGGTACCTTGAGTAGTCGAGCCACCAAAAGTGTGAGTGATGCGGGCTTAGAGGATGGGCTGAAGGATGCGTCTTTCTTGGTGAAGGATGCGTCCATAGTGAGTTGGTTGAAGGCTTTTGACGCATTGCTTGATGGGCAAGTTGGGCTAGGCGTCCATGGCTTGGATGCGTTGGTTGAGGTAGTAAGAGGGCATGGTACATTGAGGCTATATGTCCAAGGAAGGCTTGTGAGGCTGAAGCATGGGGCAATGCGTCCAAGTCAACAACCATCAGCCAAGGGCCAAGCTAAACCAGTGGCCGAAAGAGGTGGGCTAACACGCTTCCGGCTATGCGACCATGCATGCTGA

Coding sequence (CDS)

ATGTCCGTGAGTGAACATAAATCGAACACACCACCCACTGTGGAATCAAAAGACTCATCTGTGCATTTAAGATATGTCTTTCTAGGAGAGTCTTCTACTTATCCAGTCATAATTTCTTCAAAATTGAATGAAGTATACGAGGCAAAATTATTAAGAGTCTTGCAGGAGCATGATCCATCTATTGTGATGCACAAAATACTAGTGGATGATTCCTATAGTCCTTCAATTGAGCATCGGAGAAGGCTTAATCCGACAATGAAAGAGGTAGTAAAGGCCGAAGTTCTTAAATTGCTAAATGCAAGAATTATTTATGCTATATATGATAGTTTCTTGGTGAGTCTAGTGCAGATTAATCTCTTTAACCCAAAAGAAGGTGTAAAGACAACAAATATCACCCTTTTTAGGCGGGTAGTTGAGATGGGAAGTAGCCAAGAGCCTTGTTATGAAATAATCGAGTGGTGTATTATAGGTACCTTGAGTAGTCGAGCCACCAAAAGTGTGAGTGATGCGGGCTTAGAGGATGGGCTGAAGGATGCGTCTTTCTTGGTGAAGGATGCGTCCATAGTGAGTTGGTTGAAGGCTTTTGACGCATTGCTTGATGGGCAAGTTGGGCTAGGCGTCCATGGCTTGGATGCGTTGGTTGAGGTAGTAAGAGGGCATGGTACATTGAGGCTATATGTCCAAGGAAGGCTTGTGAGGCTGAAGCATGGGGCAATGCGTCCAAGTCAACAACCATCAGCCAAGGGCCAAGCTAAACCAGTGGCCGAAAGAGGTGGGCTAACACGCTTCCGGCTATGCGACCATGCATGCTGA

Protein sequence

MSVSEHKSNTPPTVESKDSSVHLRYVFLGESSTYPVIISSKLNEVYEAKLLRVLQEHDPSIVMHKILVDDSYSPSIEHRRRLNPTMKEVVKAEVLKLLNARIIYAIYDSFLVSLVQINLFNPKEGVKTTNITLFRRVVEMGSSQEPCYEIIEWCIIGTLSSRATKSVSDAGLEDGLKDASFLVKDASIVSWLKAFDALLDGQVGLGVHGLDALVEVVRGHGTLRLYVQGRLVRLKHGAMRPSQQPSAKGQAKPVAERGGLTRFRLCDHAC
Homology
BLAST of CmUC01G009560 vs. NCBI nr
Match: PON94567.1 (LOW QUALITY PROTEIN: hypothetical protein TorRG33x02_096020 [Trema orientale])

HSP 1 Score: 130.2 bits (326), Expect = 2.7e-26
Identity = 77/132 (58.33%), Postives = 88/132 (66.67%), Query Frame = 0

Query: 11  PPTVESKDSSVHLRYVFLGESSTYPVIISSKLNEVYEAKLLRVLQEH------------- 70
           PP +E K    HLRY FLGESST PVIIS+ LNE    KLLRVL+ H             
Sbjct: 336 PPELELKPLLAHLRYAFLGESSTLPVIISASLNEEQVEKLLRVLRNHKTALGWTIADIKG 395

Query: 71  -DPSIVMHKILVDDSYSPSIEHRRRLNPTMKEVVKAEVLKLLNARIIYAIYDSFLVSLVQ 129
             PSI MHKIL++D+Y PSIEH+RRLNP MKEVV+AEVLKLL+A IIY I DS  VS VQ
Sbjct: 396 ISPSICMHKILMEDNYKPSIEHQRRLNPNMKEVVRAEVLKLLDAGIIYPISDSSWVSPVQ 455

BLAST of CmUC01G009560 vs. NCBI nr
Match: XP_023874613.1 (uncharacterized protein LOC111987139 [Quercus suber])

HSP 1 Score: 123.2 bits (308), Expect = 3.3e-24
Identity = 73/140 (52.14%), Postives = 89/140 (63.57%), Query Frame = 0

Query: 3   VSEHKSNTPPTVESKDSSVHLRYVFLGESSTYPVIISSKLNEVYEAKLLRVLQEH----- 62
           +S  K     T E K    HLRY FLG+S T+PVI+++ L    E +LLRVL+EH     
Sbjct: 782 ISTEKVQQTTTPELKQLPEHLRYAFLGDSYTFPVIVAASLTPEEEERLLRVLREHRTALG 841

Query: 63  ---------DPSIVMHKILVDDSYSPSIEHRRRLNPTMKEVVKAEVLKLLNARIIYAIYD 122
                     PSI MHKIL+++ Y PSIEH+RRLNP MKEVV+AE+LKLLNA IIYAI D
Sbjct: 842 WTISDIKGISPSICMHKILMEELYKPSIEHQRRLNPAMKEVVRAEILKLLNAGIIYAISD 901

Query: 123 SFLVSLVQINLFNPKEGVKT 129
           S  VS VQ+    PK+G  T
Sbjct: 902 SSWVSPVQV---VPKKGGMT 918

BLAST of CmUC01G009560 vs. NCBI nr
Match: XP_022865871.1 (uncharacterized protein LOC111385680 [Olea europaea var. sylvestris])

HSP 1 Score: 122.9 bits (307), Expect = 4.3e-24
Identity = 72/129 (55.81%), Postives = 88/129 (68.22%), Query Frame = 0

Query: 11  PPTVESKDSSVHLRYVFLGESSTYPVIISSKLNEVYEAKLLRVLQEH------------- 70
           PP +E K  S HLRY +LGE ST PVIISS ++EV E KLLRVL+E+             
Sbjct: 487 PPKLELKQLSPHLRYAYLGEYSTLPVIISSTVSEVEEEKLLRVLRENKTAIGWSIADIKG 546

Query: 71  -DPSIVMHKILVDDSYSPSIEHRRRLNPTMKEVVKAEVLKLLNARIIYAIYDSFLVSLVQ 126
             PSI MHKIL+++ + PSI+ +RRLNP MKEVV+AEVLKLLNA IIY I DS  +S VQ
Sbjct: 547 ISPSICMHKILMEEKFKPSIDGQRRLNPHMKEVVRAEVLKLLNAGIIYPISDSAWISAVQ 606

BLAST of CmUC01G009560 vs. NCBI nr
Match: XP_024022388.1 (uncharacterized protein LOC112091888 [Morus notabilis])

HSP 1 Score: 122.9 bits (307), Expect = 4.3e-24
Identity = 74/139 (53.24%), Postives = 91/139 (65.47%), Query Frame = 0

Query: 4   SEHKSNTPPTVESKDSSVHLRYVFLGESSTYPVIISSKLNEVYEAKLLRVLQEH------ 63
           SE K+ T   +  K    HLRY+FLG +ST PVIIS+ L+E  E KL+ VL+ +      
Sbjct: 538 SELKTTTSDGLVLKQLPDHLRYIFLGHNSTKPVIISASLSEEDERKLINVLKRYSSTFAW 597

Query: 64  --------DPSIVMHKILVDDSYSPSIEHRRRLNPTMKEVVKAEVLKLLNARIIYAIYDS 123
                    P+I MHKIL++DSY P IEH+RR+NP MKEVV+AEVLKLLNA IIYAIYDS
Sbjct: 598 SISDIKGISPAICMHKILMEDSYKPFIEHQRRVNPAMKEVVRAEVLKLLNAGIIYAIYDS 657

Query: 124 FLVSLVQINLFNPKEGVKT 129
             VS VQ+    PK+G  T
Sbjct: 658 SWVSPVQV---LPKKGGMT 673

BLAST of CmUC01G009560 vs. NCBI nr
Match: XP_022851722.1 (uncharacterized protein K02A2.6-like, partial [Olea europaea var. sylvestris])

HSP 1 Score: 120.9 bits (302), Expect = 1.6e-23
Identity = 70/129 (54.26%), Postives = 88/129 (68.22%), Query Frame = 0

Query: 11  PPTVESKDSSVHLRYVFLGESSTYPVIISSKLNEVYEAKLLRVLQEH------------- 70
           PP +E K    HLRYV+LGESST P+IISS ++EV E KLLRVL+E+             
Sbjct: 81  PPKLELKQLPPHLRYVYLGESSTLPIIISSTVSEVEEKKLLRVLRENKTAIGWSIADIKG 140

Query: 71  -DPSIVMHKILVDDSYSPSIEHRRRLNPTMKEVVKAEVLKLLNARIIYAIYDSFLVSLVQ 126
             PSI MHKIL+++ + PSI+ +RRLNP MKEVV+AEV KLL+A IIY I DS  +S VQ
Sbjct: 141 ISPSICMHKILMEEKFKPSIDGQRRLNPHMKEVVRAEVFKLLDAGIIYPISDSAWISAVQ 200

BLAST of CmUC01G009560 vs. ExPASy TrEMBL
Match: A0A2P5F9V5 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_096020 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.3e-26
Identity = 77/132 (58.33%), Postives = 88/132 (66.67%), Query Frame = 0

Query: 11  PPTVESKDSSVHLRYVFLGESSTYPVIISSKLNEVYEAKLLRVLQEH------------- 70
           PP +E K    HLRY FLGESST PVIIS+ LNE    KLLRVL+ H             
Sbjct: 336 PPELELKPLLAHLRYAFLGESSTLPVIISASLNEEQVEKLLRVLRNHKTALGWTIADIKG 395

Query: 71  -DPSIVMHKILVDDSYSPSIEHRRRLNPTMKEVVKAEVLKLLNARIIYAIYDSFLVSLVQ 129
             PSI MHKIL++D+Y PSIEH+RRLNP MKEVV+AEVLKLL+A IIY I DS  VS VQ
Sbjct: 396 ISPSICMHKILMEDNYKPSIEHQRRLNPNMKEVVRAEVLKLLDAGIIYPISDSSWVSPVQ 455

BLAST of CmUC01G009560 vs. ExPASy TrEMBL
Match: A0A1R3GXK0 (Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_22658 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.0e-23
Identity = 69/129 (53.49%), Postives = 89/129 (68.99%), Query Frame = 0

Query: 11  PPTVESKDSSVHLRYVFLGESSTYPVIISSKLNEVYEAKLLRVLQEH------------- 70
           PP +E +    HLRYVFLGES+TY VIISS L+ V E K++RVL++H             
Sbjct: 682 PPKLELEQLPSHLRYVFLGESNTYLVIISSSLSSVQEEKIVRVLRKHKMAIAWTIADIKG 741

Query: 71  -DPSIVMHKILVDDSYSPSIEHRRRLNPTMKEVVKAEVLKLLNARIIYAIYDSFLVSLVQ 126
             PS+ MHKIL++++  PS+EH+RRLNP MK+VV+ EVLKLL+A IIYAI DS  VS VQ
Sbjct: 742 ISPSVCMHKILMEENNKPSVEHQRRLNPNMKDVVRDEVLKLLDAGIIYAISDSPWVSPVQ 801

BLAST of CmUC01G009560 vs. ExPASy TrEMBL
Match: A0A1R3FZW6 (Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_29836 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.3e-23
Identity = 69/129 (53.49%), Postives = 88/129 (68.22%), Query Frame = 0

Query: 11   PPTVESKDSSVHLRYVFLGESSTYPVIISSKLNEVYEAKLLRVLQEH------------- 70
            PP  E K    HLRYVFLGES+TY VIISS L+ V E K++RVL++H             
Sbjct: 1414 PPKSELKQLPSHLRYVFLGESNTYLVIISSSLSSVQEEKIVRVLRKHKMAIAWTIADIKG 1473

Query: 71   -DPSIVMHKILVDDSYSPSIEHRRRLNPTMKEVVKAEVLKLLNARIIYAIYDSFLVSLVQ 126
              PS+ MHKIL+++++  S+EH+RRLNP MK+VV+ EVLKLL+A IIYAI DS  VS VQ
Sbjct: 1474 ISPSVCMHKILMEENHKSSVEHQRRLNPNMKDVVRDEVLKLLDAGIIYAISDSPWVSPVQ 1533

BLAST of CmUC01G009560 vs. ExPASy TrEMBL
Match: A0A6P5U2U9 (uncharacterized protein LOC110774242 OS=Prunus avium OX=42229 GN=LOC110774242 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.0e-23
Identity = 67/128 (52.34%), Postives = 87/128 (67.97%), Query Frame = 0

Query: 12  PTVESKDSSVHLRYVFLGESSTYPVIISSKLNEVYEAKLLRVLQEH-------------- 71
           PT+  K    HLRY +LG S T PVII++ L+++ E KLLRVL+EH              
Sbjct: 97  PTLTLKPLPPHLRYAYLGNSETLPVIIAANLSKLEEEKLLRVLREHKMAIGWTIADIKGI 156

Query: 72  DPSIVMHKILVDDSYSPSIEHRRRLNPTMKEVVKAEVLKLLNARIIYAIYDSFLVSLVQI 126
            PS+ MH+IL++D++ PS+EH+RRLNP MKEVV+AEVLKLL+A IIY I DS  VS VQ+
Sbjct: 157 SPSMCMHRILMEDNFKPSVEHQRRLNPNMKEVVRAEVLKLLDAGIIYPISDSSWVSPVQV 216

BLAST of CmUC01G009560 vs. ExPASy TrEMBL
Match: A0A438G8J7 (Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_063695 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.2e-22
Identity = 67/131 (51.15%), Postives = 87/131 (66.41%), Query Frame = 0

Query: 9   NTPPTVESKDSSVHLRYVFLGESSTYPVIISSKLNEVYEAKLLRVLQEH----------- 68
           N PP +E K    HLRY FL +SS YPVII+S LN++ E KLLRVL+EH           
Sbjct: 352 NEPPKLELKWLPSHLRYAFLKDSSFYPVIINSSLNDLEEEKLLRVLREHKKAIGWTIDDI 411

Query: 69  ---DPSIVMHKILVDDSYSPSIEHRRRLNPTMKEVVKAEVLKLLNARIIYAIYDSFLVSL 126
               PSI MHK+L ++ Y P+++ +RRLNP+M+EVVK EV+KLL+A IIY I DS  VS 
Sbjct: 412 KGISPSICMHKVLFEEIYKPTVQPQRRLNPSMQEVVKKEVVKLLDAGIIYPISDSTWVSS 471

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PON94567.12.7e-2658.33LOW QUALITY PROTEIN: hypothetical protein TorRG33x02_096020 [Trema orientale][more]
XP_023874613.13.3e-2452.14uncharacterized protein LOC111987139 [Quercus suber][more]
XP_022865871.14.3e-2455.81uncharacterized protein LOC111385680 [Olea europaea var. sylvestris][more]
XP_024022388.14.3e-2453.24uncharacterized protein LOC112091888 [Morus notabilis][more]
XP_022851722.11.6e-2354.26uncharacterized protein K02A2.6-like, partial [Olea europaea var. sylvestris][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2P5F9V51.3e-2658.33Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_096020 PE=4 SV... [more]
A0A1R3GXK01.0e-2353.49Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_22658 PE=4 SV... [more]
A0A1R3FZW62.3e-2353.49Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_29836 PE=4 SV... [more]
A0A6P5U2U94.0e-2352.34uncharacterized protein LOC110774242 OS=Prunus avium OX=42229 GN=LOC110774242 PE... [more]
A0A438G8J71.2e-2251.15Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=CK20... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.10.10HIV Type 1 Reverse Transcriptase, subunit A, domain 1coord: 53..139
e-value: 7.3E-6
score: 28.0
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 11..133
NoneNo IPR availablePANTHERPTHR24559:SF373REVERSE TRANSCRIPTASE DOMAIN, RIBONUCLEASE H-LIKE DOMAIN PROTEIN-RELATEDcoord: 11..133

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC01G009560.1CmUC01G009560.1mRNA