CmUC01G008450 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC01G008450
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Unknown protein
Location	CmU531Chr01: 9567320 .. 9567652 (-)
RNA-Seq Expression	CmUC01G008450
Synteny	CmUC01G008450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGAGGAGATGACGTTCATGGATCACGTTATGTTGCCACCGGAAGCATCGATCTTACCACCGACACCCATGTTATCACCGTTACCACAAAATGATCCCGAGCCTTCAACAAGTCACACTAATGACGATGTTGATGCAAACGAGGATGTAGAAAGGAGGAATTGGAGGAGGAGGGAGAAGAAGAAGAGTCTGAAGAAGATGTTAAAAAAAATGAAAAGTTGCAGTAAAAAACTTGAGGCTAAAGTTAATGACCTTAATGATCGTGTTGGAGGCATCAAGAAGGACCTAAAAGCAATGAAGAAATATTTCCGCCGAATGTCTAAGGTATGA

mRNA sequence

ATGAAAGAGGAGATGACGTTCATGGATCACGTTATGTTGCCACCGGAAGCATCGATCTTACCACCGACACCCATGTTATCACCGTTACCACAAAATGATCCCGAGCCTTCAACAAGTCACACTAATGACGATGTTGATGCAAACGAGGATGTAGAAAGGAGGAATTGGAGGAGGAGGGAGAAGAAGAAGAGTCTGAAGAAGATGTTAAAAAAAATGAAAAGTTGCAGTAAAAAACTTGAGGCTAAAGTTAATGACCTTAATGATCGTGTTGGAGGCATCAAGAAGGACCTAAAAGCAATGAAGAAATATTTCCGCCGAATGTCTAAGGTATGA

Coding sequence (CDS)

ATGAAAGAGGAGATGACGTTCATGGATCACGTTATGTTGCCACCGGAAGCATCGATCTTACCACCGACACCCATGTTATCACCGTTACCACAAAATGATCCCGAGCCTTCAACAAGTCACACTAATGACGATGTTGATGCAAACGAGGATGTAGAAAGGAGGAATTGGAGGAGGAGGGAGAAGAAGAAGAGTCTGAAGAAGATGTTAAAAAAAATGAAAAGTTGCAGTAAAAAACTTGAGGCTAAAGTTAATGACCTTAATGATCGTGTTGGAGGCATCAAGAAGGACCTAAAAGCAATGAAGAAATATTTCCGCCGAATGTCTAAGGTATGA

Protein sequence

MKEEMTFMDHVMLPPEASILPPTPMLSPLPQNDPEPSTSHTNDDVDANEDVERRNWRRREKKKSLKKMLKKMKSCSKKLEAKVNDLNDRVGGIKKDLKAMKKYFRRMSKV

Homology

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BLAST of CmUC01G008450 vs. NCBI nr
Match: XP_038881592.1 (uncharacterized protein LOC120073060 [Benincasa hispida])

HSP 1 Score: 62.8 bits (151), Expect = 2.2e-06
Identity = 46/90 (51.11%), Postives = 59/90 (65.56%), Query Frame = 0


Query: 21  PPTPMLSPLPQNDPEPSTSHTNDDVDANEDVERRNWRRREKKKSLKKMLKK-MKSCSKKL 80
           P  P + P+P    E ST+   D+V+ANED ERRN RRR+ KKS+KKM KK MK   K+ 
Sbjct: 211 PSLPPMPPVPPIGVETSTTQAPDNVNANEDEERRN-RRRKNKKSMKKMFKKFMKEVGKRF 270

Query: 81  EAKVNDLNDRVGGIKKDLKAMKKYFRRMSK 110
           +A    L+  V  ++K+ KAMKKY RRMSK
Sbjct: 271 DA----LDQHVERLEKNFKAMKKYMRRMSK 295

The following BLAST results are available for this feature:

BLAST of CmUC01G008450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881592.1	2.2e-06	51.11	uncharacterized protein LOC120073060 [Benincasa hispida]	[more]

BLAST of CmUC01G008450 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC01G008450 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC01G008450 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 62..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC01G008450.1	CmUC01G008450.1	mRNA