Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATCAAGTTCACAGCAAATTTCCCTAAATATGAATGAATTTCATTCCTTCATCACAGCAATTAATGAAAGAAATCCTGGAATCAACAGCTTACCAATTTGTATCATAATGCAGAGGCCTCCACCAGCCAACAGCTCTGAGACTCAGAATAATCTTGGGAAGACAATTCTTGGCCTTACTTTTCAGGCAGTTTTAGCCTTGTTCATTAGCACACCCAGTTCATCCCCTCCATTTTTGACACATCTCTTTGGTGCTGCAGTCTTGATTAGCTTTGCAGTTTCATTTGCTGGACTTTTCCTTCAAAATGCATTCCCGAGAATCGCACTTTTGTTTGGAAAGATCGGTGCTCTTATCGCTGCAATTGGTGTGTGCATCATAGCAAGTCTTCTTCTAATCCATCAGAACTTTGCCTGGATCTCTTGGCTGGCATGTGGCTTGTCCTTGATGGCTTTTATTCTATCATTTAAAGGGTAG
mRNA sequence
ATGGAATCAAGTTCACAGCAAATTTCCCTAAATATGAATGAATTTCATTCCTTCATCACAGCAATTAATGAAAGAAATCCTGGAATCAACAGCTTACCAATTTGTATCATAATGCAGAGGCCTCCACCAGCCAACAGCTCTGAGACTCAGAATAATCTTGGGAAGACAATTCTTGGCCTTACTTTTCAGGCAGTTTTAGCCTTGTTCATTAGCACACCCAGTTCATCCCCTCCATTTTTGACACATCTCTTTGGTGCTGCAGTCTTGATTAGCTTTGCAGTTTCATTTGCTGGACTTTTCCTTCAAAATGCATTCCCGAGAATCGCACTTTTGTTTGGAAAGATCGGTGCTCTTATCGCTGCAATTGGTGTGTGCATCATAGCAAGTCTTCTTCTAATCCATCAGAACTTTGCCTGGATCTCTTGGCTGGCATGTGGCTTGTCCTTGATGGCTTTTATTCTATCATTTAAAGGGTAG
Coding sequence (CDS)
ATGGAATCAAGTTCACAGCAAATTTCCCTAAATATGAATGAATTTCATTCCTTCATCACAGCAATTAATGAAAGAAATCCTGGAATCAACAGCTTACCAATTTGTATCATAATGCAGAGGCCTCCACCAGCCAACAGCTCTGAGACTCAGAATAATCTTGGGAAGACAATTCTTGGCCTTACTTTTCAGGCAGTTTTAGCCTTGTTCATTAGCACACCCAGTTCATCCCCTCCATTTTTGACACATCTCTTTGGTGCTGCAGTCTTGATTAGCTTTGCAGTTTCATTTGCTGGACTTTTCCTTCAAAATGCATTCCCGAGAATCGCACTTTTGTTTGGAAAGATCGGTGCTCTTATCGCTGCAATTGGTGTGTGCATCATAGCAAGTCTTCTTCTAATCCATCAGAACTTTGCCTGGATCTCTTGGCTGGCATGTGGCTTGTCCTTGATGGCTTTTATTCTATCATTTAAAGGGTAG
Protein sequence
MESSSQQISLNMNEFHSFITAINERNPGINSLPICIIMQRPPPANSSETQNNLGKTILGLTFQAVLALFISTPSSSPPFLTHLFGAAVLISFAVSFAGLFLQNAFPRIALLFGKIGALIAAIGVCIIASLLLIHQNFAWISWLACGLSLMAFILSFKG
Homology
BLAST of CmUC01G007330 vs. NCBI nr
Match:
KGN49803.1 (hypothetical protein Csa_004681 [Cucumis sativus])
HSP 1 Score: 240.0 bits (611), Expect = 1.4e-59
Identity = 127/158 (80.38%), Postives = 142/158 (89.87%), Query Frame = 0
Query: 1 MESSSQQISLNMNEFHSFITAINERNPGINSLPICIIMQRPPPANSSETQNNLGKTILGL 60
MESSSQQIS++MN +S IT+INERNP IN LPICIIMQ PANSS+T+NN+G TILGL
Sbjct: 1 MESSSQQISIDMNHLYSLITSINERNPEINGLPICIIMQTASPANSSKTENNVGTTILGL 60
Query: 61 TFQAVLALFISTPSSSPPFLTHLFGAAVLISFAVSFAGLFLQNAFPRIALLFGKIGALIA 120
TFQAVLALFI++ +SSPP LTHLFGAAVLISFAVSF G+FLQ+ FPRIALLF KIGALIA
Sbjct: 61 TFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIA 120
Query: 121 AIGVCIIASLLLIHQNFAWISWLACGLSLMAFILSFKG 159
AIGVCI+AS LLIHQNFAWISWLACG SLMAF+LSF+G
Sbjct: 121 AIGVCILAS-LLIHQNFAWISWLACGFSLMAFLLSFRG 157
BLAST of CmUC01G007330 vs. NCBI nr
Match:
KAA0050246.1 (putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ98160.1 putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa])
HSP 1 Score: 239.2 bits (609), Expect = 2.4e-59
Identity = 125/147 (85.03%), Postives = 136/147 (92.52%), Query Frame = 0
Query: 12 MNEFHSFITAINERNPGINSLPICIIMQRPPPANSSETQNNLGKTILGLTFQAVLALFIS 71
MNE +SFITAINERNP INSLPICI MQRP PANSS+T+NN+GKTILGLTFQAVLALFI+
Sbjct: 1 MNELYSFITAINERNPEINSLPICITMQRPSPANSSKTENNVGKTILGLTFQAVLALFIT 60
Query: 72 TPSSSPPFLTHLFGAAVLISFAVSFAGLFLQNAFPRIALLFGKIGALIAAIGVCIIASLL 131
+P+SSPP LTHLF AAVLISFAVSFAG+FLQN FPRIALLF KIGALIAAIGVCI+AS L
Sbjct: 61 SPNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPRIALLFEKIGALIAAIGVCIVAS-L 120
Query: 132 LIHQNFAWISWLACGLSLMAFILSFKG 159
LIHQNFAWISWLA G SLMAF+LSF+G
Sbjct: 121 LIHQNFAWISWLASGFSLMAFVLSFRG 146
BLAST of CmUC01G007330 vs. NCBI nr
Match:
KAG6579137.1 (hypothetical protein SDJN03_23585, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 170.2 bits (430), Expect = 1.4e-38
Identity = 94/157 (59.87%), Postives = 118/157 (75.16%), Query Frame = 0
Query: 1 MESSSQQISLNMNEFHSFITAINERNPGINSLPICIIMQRPPPANSSETQNNLGKTILGL 60
M S+ Q +S++MN+F I ++ P ++P + PPP +SS+T+NNLGK + GL
Sbjct: 1 MGSTPQHVSIDMNQFCP-IQGASDGLPPTTAMP-----RPPPPPDSSQTRNNLGKIVFGL 60
Query: 61 TFQAVLALFISTPSSSPPFLTHLFGAAVLISFAVSFAGLFLQNAFPRIALLFGKIGALIA 120
TFQAVLALFIS P+S PP L H+F AA+LISFA+S A LFLQ A+PRIAL GKIGAL+A
Sbjct: 61 TFQAVLALFISPPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPRIALSSGKIGALLA 120
Query: 121 AIGVCIIASLLLIHQNFAWISWLACGLSLMAFILSFK 158
AIG C I S+LL HQ+F+WI WLACG +LMAFILSFK
Sbjct: 121 AIGACTITSVLLKHQHFSWIPWLACGFALMAFILSFK 151
BLAST of CmUC01G007330 vs. NCBI nr
Match:
KGN49808.1 (hypothetical protein Csa_004650 [Cucumis sativus])
HSP 1 Score: 168.3 bits (425), Expect = 5.3e-38
Identity = 97/165 (58.79%), Postives = 117/165 (70.91%), Query Frame = 0
Query: 1 MESSSQQISLNMNEFHSFITAINERNPGI-------NSLPICIIMQRPPPANSSETQNNL 60
M S+S Q SL+M+ F SFI I++RN G+ N LP+ I MQ+ P A + +Q L
Sbjct: 1 MASTSHQTSLDMSAFSSFIRTISQRNYGLGCCCTPSNCLPVFIRMQQSPQATADSSQ-KL 60
Query: 61 GKTILGLTFQAVLALFIST-PSSSPPFLTHLFGAAVLISFAVSFAGLFLQNAFPRIALLF 120
GK IL L+FQAVLALFIS+ P+S PP L H F AAV ISFAVSFA LFL N+FPR A LF
Sbjct: 61 GKIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAHLF 120
Query: 121 GKIGALIAAIGVCIIASLLLIHQNFAWISWLACGLSLMAFILSFK 158
K+GAL +A GVC IAS LL+HQNFAWI W+AC S++ F LSFK
Sbjct: 121 EKVGALFSAFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164
BLAST of CmUC01G007330 vs. NCBI nr
Match:
KAG6579136.1 (hypothetical protein SDJN03_23584, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 162.5 bits (410), Expect = 2.9e-36
Identity = 92/157 (58.60%), Postives = 113/157 (71.97%), Query Frame = 0
Query: 1 MESSSQQISLNMNEFHSFITAINERNPGINSLPICIIMQRPPPANSSETQNNLGKTILGL 60
M S+ Q +S++MN+F S I + G++ P + +NNLGK + GL
Sbjct: 1 MGSTPQHVSIDMNQFSS----IQGASDGLHREP--------------QARNNLGKIVFGL 60
Query: 61 TFQAVLALFISTPSSSPPFLTHLFGAAVLISFAVSFAGLFLQNAFPRIALLFGKIGALIA 120
TFQAVLALFISTP+S PP L +LF AA+LIS A+S A LFLQ AFPRIAL FGKIGA++A
Sbjct: 61 TFQAVLALFISTPTSFPPLLINLFAAAMLISLALSLAALFLQTAFPRIALSFGKIGAMLA 120
Query: 121 AIGVCIIASLLLIHQNFAWISWLACGLSLMAFILSFK 158
A+G CI+ASLLL HQNF+WI WLACG +LMAFILSFK
Sbjct: 121 AVGACIMASLLLKHQNFSWIPWLACGFALMAFILSFK 139
BLAST of CmUC01G007330 vs. ExPASy TrEMBL
Match:
A0A0A0KJN8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1)
HSP 1 Score: 240.0 bits (611), Expect = 6.9e-60
Identity = 127/158 (80.38%), Postives = 142/158 (89.87%), Query Frame = 0
Query: 1 MESSSQQISLNMNEFHSFITAINERNPGINSLPICIIMQRPPPANSSETQNNLGKTILGL 60
MESSSQQIS++MN +S IT+INERNP IN LPICIIMQ PANSS+T+NN+G TILGL
Sbjct: 1 MESSSQQISIDMNHLYSLITSINERNPEINGLPICIIMQTASPANSSKTENNVGTTILGL 60
Query: 61 TFQAVLALFISTPSSSPPFLTHLFGAAVLISFAVSFAGLFLQNAFPRIALLFGKIGALIA 120
TFQAVLALFI++ +SSPP LTHLFGAAVLISFAVSF G+FLQ+ FPRIALLF KIGALIA
Sbjct: 61 TFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIA 120
Query: 121 AIGVCIIASLLLIHQNFAWISWLACGLSLMAFILSFKG 159
AIGVCI+AS LLIHQNFAWISWLACG SLMAF+LSF+G
Sbjct: 121 AIGVCILAS-LLIHQNFAWISWLACGFSLMAFLLSFRG 157
BLAST of CmUC01G007330 vs. ExPASy TrEMBL
Match:
A0A5A7U7U1 (Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00420 PE=4 SV=1)
HSP 1 Score: 239.2 bits (609), Expect = 1.2e-59
Identity = 125/147 (85.03%), Postives = 136/147 (92.52%), Query Frame = 0
Query: 12 MNEFHSFITAINERNPGINSLPICIIMQRPPPANSSETQNNLGKTILGLTFQAVLALFIS 71
MNE +SFITAINERNP INSLPICI MQRP PANSS+T+NN+GKTILGLTFQAVLALFI+
Sbjct: 1 MNELYSFITAINERNPEINSLPICITMQRPSPANSSKTENNVGKTILGLTFQAVLALFIT 60
Query: 72 TPSSSPPFLTHLFGAAVLISFAVSFAGLFLQNAFPRIALLFGKIGALIAAIGVCIIASLL 131
+P+SSPP LTHLF AAVLISFAVSFAG+FLQN FPRIALLF KIGALIAAIGVCI+AS L
Sbjct: 61 SPNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPRIALLFEKIGALIAAIGVCIVAS-L 120
Query: 132 LIHQNFAWISWLACGLSLMAFILSFKG 159
LIHQNFAWISWLA G SLMAF+LSF+G
Sbjct: 121 LIHQNFAWISWLASGFSLMAFVLSFRG 146
BLAST of CmUC01G007330 vs. ExPASy TrEMBL
Match:
A0A0A0KJP2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1)
HSP 1 Score: 168.3 bits (425), Expect = 2.5e-38
Identity = 97/165 (58.79%), Postives = 117/165 (70.91%), Query Frame = 0
Query: 1 MESSSQQISLNMNEFHSFITAINERNPGI-------NSLPICIIMQRPPPANSSETQNNL 60
M S+S Q SL+M+ F SFI I++RN G+ N LP+ I MQ+ P A + +Q L
Sbjct: 1 MASTSHQTSLDMSAFSSFIRTISQRNYGLGCCCTPSNCLPVFIRMQQSPQATADSSQ-KL 60
Query: 61 GKTILGLTFQAVLALFIST-PSSSPPFLTHLFGAAVLISFAVSFAGLFLQNAFPRIALLF 120
GK IL L+FQAVLALFIS+ P+S PP L H F AAV ISFAVSFA LFL N+FPR A LF
Sbjct: 61 GKIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAHLF 120
Query: 121 GKIGALIAAIGVCIIASLLLIHQNFAWISWLACGLSLMAFILSFK 158
K+GAL +A GVC IAS LL+HQNFAWI W+AC S++ F LSFK
Sbjct: 121 EKVGALFSAFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164
BLAST of CmUC01G007330 vs. ExPASy TrEMBL
Match:
A0A6J1CY58 (uncharacterized protein LOC111015658 OS=Momordica charantia OX=3673 GN=LOC111015658 PE=4 SV=1)
HSP 1 Score: 142.9 bits (359), Expect = 1.1e-30
Identity = 86/127 (67.72%), Postives = 94/127 (74.02%), Query Frame = 0
Query: 1 MESSSQQISLNMNEFHSFITAINERNPGINS-------------LPICIIMQRPPPANSS 60
M S+ QQ S++MN SFITAINERN GI+S LPICI MQRPPPA SS
Sbjct: 1 MASTPQQTSVDMNALSSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRPPPAKSS 60
Query: 61 ETQNNLGKTILGLTFQAVLALFISTPSSSPPFLTHLFGAAVLISFAVSFAGLFLQNAFPR 115
+ +LGKTILGLTFQAVLALFIS PSS P T LFGAAVLISFAVSFAGLFLQ A+PR
Sbjct: 61 Q---SLGKTILGLTFQAVLALFISLPSSPPQLPTLLFGAAVLISFAVSFAGLFLQTAYPR 120
BLAST of CmUC01G007330 vs. ExPASy TrEMBL
Match:
A0A5D3BEH8 (Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00440 PE=4 SV=1)
HSP 1 Score: 142.1 bits (357), Expect = 2.0e-30
Identity = 86/166 (51.81%), Postives = 104/166 (62.65%), Query Frame = 0
Query: 2 ESSSQQISLNMNEFHSFITAINERNPGINS----------LPICIIMQRPPPANSSETQN 61
E+ +ISL+MNE +SFITA+ RNPGI+S LPI I MQRP P NS +
Sbjct: 3 ETKPHEISLDMNELYSFITAVTNRNPGISSCTWGTAASDCLPIYIKMQRPSPVNSPQ--- 62
Query: 62 NLGKTILGLTFQAVLALFISTPSSSPPFLTHLFGAAVLISFAVSFAGLFLQNAFPRIALL 121
G T + FQA+L LF++ P S PP L+ L G +L +F SF G+ LQ FP+IA L
Sbjct: 63 -FGNTFVSSNFQAILGLFLNLPPSPPP-LSELIGTVMLTAFVFSFCGVLLQKPFPKIAHL 122
Query: 122 FGKIGALIAAIGVCIIASLLLIHQNFAWISWLACGLSLMAFILSFK 158
GAL+AAIGVCI+ S LL H N WI WLACGL L AFI SFK
Sbjct: 123 LQMFGALLAAIGVCIMGSPLL-HPNLTWIRWLACGLILPAFITSFK 162
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KGN49803.1 | 1.4e-59 | 80.38 | hypothetical protein Csa_004681 [Cucumis sativus] | [more] |
KAA0050246.1 | 2.4e-59 | 85.03 | putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ981... | [more] |
KAG6579137.1 | 1.4e-38 | 59.87 | hypothetical protein SDJN03_23585, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KGN49808.1 | 5.3e-38 | 58.79 | hypothetical protein Csa_004650 [Cucumis sativus] | [more] |
KAG6579136.1 | 2.9e-36 | 58.60 | hypothetical protein SDJN03_23584, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KJN8 | 6.9e-60 | 80.38 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1 | [more] |
A0A5A7U7U1 | 1.2e-59 | 85.03 | Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A0A0KJP2 | 2.5e-38 | 58.79 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1 | [more] |
A0A6J1CY58 | 1.1e-30 | 67.72 | uncharacterized protein LOC111015658 OS=Momordica charantia OX=3673 GN=LOC111015... | [more] |
A0A5D3BEH8 | 2.0e-30 | 51.81 | Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=119... | [more] |
Match Name | E-value | Identity | Description | |