CmUC01G006200 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC01G006200
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	CLAVATA3/ESR (CLE)-related protein 17-like
Location	CmU531Chr01: 6551562 .. 6551852 (+)
RNA-Seq Expression	CmUC01G006200
Synteny	CmUC01G006200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGTACGAACCGAAACCTGCAGCCGCCACGGTGTCGGAGCCACCACCGCGCTTCTTCTCTTCTTCTGGGTCCTTCTCGTTTTACCTCCGGCTAGCCTCTGTCTTCACCTGCCACTGCCACCGCCGCCGCCACCGTCGAGGAAATTAGCCCGATTCTCCACGGCATCGTTTCGCCATGCACCGCCTGCAACTGAGCTTCTCGACCGCCGTCAGTCAGCCGCCGACGCCGCCGCTTACGGCGACGACAAACGGTTAATTCATACGGGTCCGAATCCTCTTCACAACTAA

mRNA sequence

ATGAGAGTACGAACCGAAACCTGCAGCCGCCACGGTGTCGGAGCCACCACCGCGCTTCTTCTCTTCTTCTGGGTCCTTCTCGTTTTACCTCCGGCTAGCCTCTGTCTTCACCTGCCACTGCCACCGCCGCCGCCACCGTCGAGGAAATTAGCCCGATTCTCCACGGCATCGTTTCGCCATGCACCGCCTGCAACTGAGCTTCTCGACCGCCGTCAGTCAGCCGCCGACGCCGCCGCTTACGGCGACGACAAACGGTTAATTCATACGGGTCCGAATCCTCTTCACAACTAA

Coding sequence (CDS)

ATGAGAGTACGAACCGAAACCTGCAGCCGCCACGGTGTCGGAGCCACCACCGCGCTTCTTCTCTTCTTCTGGGTCCTTCTCGTTTTACCTCCGGCTAGCCTCTGTCTTCACCTGCCACTGCCACCGCCGCCGCCACCGTCGAGGAAATTAGCCCGATTCTCCACGGCATCGTTTCGCCATGCACCGCCTGCAACTGAGCTTCTCGACCGCCGTCAGTCAGCCGCCGACGCCGCCGCTTACGGCGACGACAAACGGTTAATTCATACGGGTCCGAATCCTCTTCACAACTAA

Protein sequence

MRVRTETCSRHGVGATTALLLFFWVLLVLPPASLCLHLPLPPPPPPSRKLARFSTASFRHAPPATELLDRRQSAADAAAYGDDKRLIHTGPNPLHN

Homology

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BLAST of CmUC01G006200 vs. NCBI nr
Match: XP_011656246.1 (CLAVATA3/ESR (CLE)-related protein 17 [Cucumis sativus] >KGN51492.1 hypothetical protein Csa_008181 [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 8.7e-28
Identity = 72/101 (71.29%), Postives = 76/101 (75.25%), Query Frame = 0


Query: 1  MRVRTETCSRHGVGATTALLLFFWVLLVLPPASLCLHLPLPPPPPPSRKLARFSTASFRH 60
          M   T T SRH V  TTAL LFFWVLL+  P +LCLH  LPPPPPPSRKLARFSTA F H
Sbjct: 1  MTPSTGTSSRHRVRPTTALFLFFWVLLISAPTTLCLH--LPPPPPPSRKLARFSTAFFHH 60

Query: 61 APPAT-----ELLDRRQSAADAAAYGDDKRLIHTGPNPLHN 97
          APP T     EL DR QSAA AAAYG++KRLIHTGPNPLHN
Sbjct: 61 APPTTTTSPAELFDRHQSAAVAAAYGENKRLIHTGPNPLHN 99

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BLAST of CmUC01G006200 vs. NCBI nr
Match: XP_008437694.1 (PREDICTED: CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis melo] >KAA0046325.1 CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis melo var. makuwa])

HSP 1 Score: 132.9 bits (333), Expect = 1.5e-27
Identity = 73/101 (72.28%), Postives = 78/101 (77.23%), Query Frame = 0


Query: 1  MRVRTETCSRHGVGATTALLLFFWVLLVLPPASLCLHLPLPPPPPPSRKLARFSTASFRH 60
          M  +T T SRH    TTALLLFFWVLL+L P +LCLH  LPPPPPPSRKLARFSTASFRH
Sbjct: 1  MTPQTGTSSRHRARPTTALLLFFWVLLILAPTTLCLH--LPPPPPPSRKLARFSTASFRH 60

Query: 61 APPAT-----ELLDRRQSAADAAAYGDDKRLIHTGPNPLHN 97
          APP T     ELLDRRQ    A+AY +DKRLIHTGPNPLHN
Sbjct: 61 APPTTTTSPAELLDRRQ---PASAYREDKRLIHTGPNPLHN 96

[Close]

BLAST of CmUC01G006200 vs. NCBI nr
Match: KAG7016766.1 (hypothetical protein SDJN02_21876, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 130.2 bits (326), Expect = 9.7e-27
Identity = 75/102 (73.53%), Postives = 80/102 (78.43%), Query Frame = 0


Query: 1  MRVRTETCSRHGVGA--TTALLLFFWVLLVLPPASLCLHLPLPPPPPPSRKLARFSTASF 60
          MRVRT TCSRHG GA  TTAL+LF WVLL+L PA+  L   LPP P   RKL RFSTASF
Sbjct: 1  MRVRTVTCSRHGAGATTTTALVLFLWVLLILAPATTTLCFQLPPSP---RKLVRFSTASF 60

Query: 61 RHAPPAT---ELLDRRQSAAD-AAAYGDDKRLIHTGPNPLHN 97
          RHAPPAT   ELL RRQS+A  AAAYGD+KRLIHTGPNPLHN
Sbjct: 61 RHAPPATSPAELLHRRQSSAGAAAAYGDEKRLIHTGPNPLHN 99

[Close]

BLAST of CmUC01G006200 vs. NCBI nr
Match: KAG6579251.1 (hypothetical protein SDJN03_23699, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110.2 bits (274), Expect = 1.0e-20
Identity = 67/95 (70.53%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 1   MRVRTETCSRHGVGA--TTALLLFFWVLLVLPPASLCLHLPLPPPPPPSRKLARFSTASF 60
           MRVRT TCSRHG GA  TTAL+LF WVLL+L PA+  L   LPP P   RKL RFSTASF
Sbjct: 29  MRVRTVTCSRHGAGATTTTALVLFLWVLLILAPATTTLCFQLPPSP---RKLVRFSTASF 88

Query: 61  RHAPPAT---ELLDRRQSAAD-AAAYGDDKRLIHT 90
           RHAP AT   ELL RRQS+A  AAAYGD+KRLIHT
Sbjct: 89  RHAPSATSPAELLHRRQSSAGAAAAYGDEKRLIHT 120

[Close]

BLAST of CmUC01G006200 vs. NCBI nr
Match: KAG6601877.1 (CLAVATA3/ESR (CLE)-related protein 16, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109.4 bits (272), Expect = 1.8e-20
Identity = 62/93 (66.67%), Postives = 65/93 (69.89%), Query Frame = 0


Query: 7  TCSRHGVGATT--ALLLFFWVLLVLPPASLCLHLPLPPPPPPSRKLARFSTASFRHAPPA 66
          T + H   ATT  A LLFFWVLL+ PP +LCLH  LPPPPP SRKL  FSTAS  HA   
Sbjct: 2  TLTTHASAATTAYAFLLFFWVLLIFPPPTLCLH--LPPPPPTSRKLVHFSTASLSHATSP 61

Query: 67 TELLDRR-QSAADAAAYGDDKRLIHTGPNPLHN 97
           ELL  R  SAA AA Y DDKRLIHTGPNPLHN
Sbjct: 62 PELLHHRPTSAAAAAVYTDDKRLIHTGPNPLHN 92

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BLAST of CmUC01G006200 vs. ExPASy Swiss-Prot
Match: Q8L9H6 (CLAVATA3/ESR (CLE)-related protein 17 OS=Arabidopsis thaliana OX=3702 GN=CLE17 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.1e-08
Identity = 40/96 (41.67%), Postives = 49/96 (51.04%), Query Frame = 0


Query: 10 RHGVGATTALLLFFWVL-----LVLPPASLC----LHLPLPPPPPPSRKLARFSTASFRH 69
          R  V  T    LFF+V      +VL  ++      LHL   PPPPP RK  R+STA FR 
Sbjct: 16 RWDVNMTMCFFLFFFVFYVSFQIVLSSSASVGYSRLHLVASPPPPPPRKALRYSTAPFRG 75

Query: 70 APPATELLDRRQSAADAAAYGDDKRLIHTGPNPLHN 97
               ++            YGDDKR++HTGPNPLHN
Sbjct: 76 PLSRDDI------------YGDDKRVVHTGPNPLHN 99

[Close]

BLAST of CmUC01G006200 vs. ExPASy TrEMBL
Match: A0A0A0KSY2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G570370 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.2e-28
Identity = 72/101 (71.29%), Postives = 76/101 (75.25%), Query Frame = 0


Query: 1  MRVRTETCSRHGVGATTALLLFFWVLLVLPPASLCLHLPLPPPPPPSRKLARFSTASFRH 60
          M   T T SRH V  TTAL LFFWVLL+  P +LCLH  LPPPPPPSRKLARFSTA F H
Sbjct: 1  MTPSTGTSSRHRVRPTTALFLFFWVLLISAPTTLCLH--LPPPPPPSRKLARFSTAFFHH 60

Query: 61 APPAT-----ELLDRRQSAADAAAYGDDKRLIHTGPNPLHN 97
          APP T     EL DR QSAA AAAYG++KRLIHTGPNPLHN
Sbjct: 61 APPTTTTSPAELFDRHQSAAVAAAYGENKRLIHTGPNPLHN 99

[Close]

BLAST of CmUC01G006200 vs. ExPASy TrEMBL
Match: A0A5A7TY55 (CLAVATA3/ESR (CLE)-related protein 17-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G00340 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 7.2e-28
Identity = 73/101 (72.28%), Postives = 78/101 (77.23%), Query Frame = 0


Query: 1  MRVRTETCSRHGVGATTALLLFFWVLLVLPPASLCLHLPLPPPPPPSRKLARFSTASFRH 60
          M  +T T SRH    TTALLLFFWVLL+L P +LCLH  LPPPPPPSRKLARFSTASFRH
Sbjct: 1  MTPQTGTSSRHRARPTTALLLFFWVLLILAPTTLCLH--LPPPPPPSRKLARFSTASFRH 60

Query: 61 APPAT-----ELLDRRQSAADAAAYGDDKRLIHTGPNPLHN 97
          APP T     ELLDRRQ    A+AY +DKRLIHTGPNPLHN
Sbjct: 61 APPTTTTSPAELLDRRQ---PASAYREDKRLIHTGPNPLHN 96

[Close]

BLAST of CmUC01G006200 vs. ExPASy TrEMBL
Match: A0A1S3AUM2 (CLAVATA3/ESR (CLE)-related protein 17-like OS=Cucumis melo OX=3656 GN=LOC103483038 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 7.2e-28
Identity = 73/101 (72.28%), Postives = 78/101 (77.23%), Query Frame = 0


Query: 1  MRVRTETCSRHGVGATTALLLFFWVLLVLPPASLCLHLPLPPPPPPSRKLARFSTASFRH 60
          M  +T T SRH    TTALLLFFWVLL+L P +LCLH  LPPPPPPSRKLARFSTASFRH
Sbjct: 1  MTPQTGTSSRHRARPTTALLLFFWVLLILAPTTLCLH--LPPPPPPSRKLARFSTASFRH 60

Query: 61 APPAT-----ELLDRRQSAADAAAYGDDKRLIHTGPNPLHN 97
          APP T     ELLDRRQ    A+AY +DKRLIHTGPNPLHN
Sbjct: 61 APPTTTTSPAELLDRRQ---PASAYREDKRLIHTGPNPLHN 96

[Close]

BLAST of CmUC01G006200 vs. ExPASy TrEMBL
Match: A0A178WDE5 (CLE17 OS=Arabidopsis thaliana OX=3702 GN=AXX17_At1g65080 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 7.8e-06
Identity = 40/96 (41.67%), Postives = 49/96 (51.04%), Query Frame = 0


Query: 10 RHGVGATTALLLFFWVL-----LVLPPASLC----LHLPLPPPPPPSRKLARFSTASFRH 69
          R  V  T    LFF+V      +VL  ++      LHL   PPPPP RK  R+STA FR 
Sbjct: 16 RWDVNMTMCFFLFFFVFYVSFQIVLSSSASVGYSRLHLVASPPPPPPRKALRYSTAPFRG 75

Query: 70 APPATELLDRRQSAADAAAYGDDKRLIHTGPNPLHN 97
               ++            YGDDKR++HTGPNPLHN
Sbjct: 76 PLSRDDI------------YGDDKRVVHTGPNPLHN 99

[Close]

BLAST of CmUC01G006200 vs. TAIR 10
Match: AT1G70895.1 (CLAVATA3/ESR-RELATED 17 )

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-09
Identity = 40/96 (41.67%), Postives = 49/96 (51.04%), Query Frame = 0


Query: 10 RHGVGATTALLLFFWVL-----LVLPPASLC----LHLPLPPPPPPSRKLARFSTASFRH 69
          R  V  T    LFF+V      +VL  ++      LHL   PPPPP RK  R+STA FR 
Sbjct: 16 RWDVNMTMCFFLFFFVFYVSFQIVLSSSASVGYSRLHLVASPPPPPPRKALRYSTAPFRG 75

Query: 70 APPATELLDRRQSAADAAAYGDDKRLIHTGPNPLHN 97
               ++            YGDDKR++HTGPNPLHN
Sbjct: 76 PLSRDDI------------YGDDKRVVHTGPNPLHN 99

[Close]

BLAST of CmUC01G006200 vs. TAIR 10
Match: AT1G70895.2 (CLAVATA3/ESR-RELATED 17 )

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-09
Identity = 40/96 (41.67%), Postives = 49/96 (51.04%), Query Frame = 0


Query: 10 RHGVGATTALLLFFWVL-----LVLPPASLC----LHLPLPPPPPPSRKLARFSTASFRH 69
          R  V  T    LFF+V      +VL  ++      LHL   PPPPP RK  R+STA FR 
Sbjct: 16 RWDVNMTMCFFLFFFVFYVSFQIVLSSSASVGYSRLHLVASPPPPPPRKALRYSTAPFRG 75

Query: 70 APPATELLDRRQSAADAAAYGDDKRLIHTGPNPLHN 97
               ++            YGDDKR++HTGPNPLHN
Sbjct: 76 PLSRDDI------------YGDDKRVVHTGPNPLHN 99

[Close]

BLAST of CmUC01G006200 vs. TAIR 10
Match: AT2G01505.1 (CLAVATA3/ESR-RELATED 16 )

HSP 1 Score: 41.2 bits (95), Expect = 5.5e-04
Identity = 35/102 (34.31%), Postives = 42/102 (41.18%), Query Frame = 0


Query: 6   ETCSR-------HGVGATTALLLFFWVLLVLPPASLCLHLPLPPPPPPS--RKLARFSTA 65
           E CSR       +    T    +FF  + V     +       P   PS  RK   F   
Sbjct: 2   EACSRKRRRRRAYTTSTTGYAAVFFCGIFVFAQFGISSSALFAPDHYPSLPRKAGHFHEM 61

Query: 66  SFRHAPPATELL--DRRQSAADAAAYGDDKRLIHTGPNPLHN 97
           +   AP AT      RR+       Y DDKRL+HTGPNPLHN
Sbjct: 62  ASFQAPKATVSFTGQRREEENRDEVYKDDKRLVHTGPNPLHN 103

The following BLAST results are available for this feature:

BLAST of CmUC01G006200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656246.1	8.7e-28	71.29	CLAVATA3/ESR (CLE)-related protein 17 [Cucumis sativus] >KGN51492.1 hypothetical...	[more]
XP_008437694.1	1.5e-27	72.28	PREDICTED: CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis melo] >KAA0046325...	[more]
KAG7016766.1	9.7e-27	73.53	hypothetical protein SDJN02_21876, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6579251.1	1.0e-20	70.53	hypothetical protein SDJN03_23699, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6601877.1	1.8e-20	66.67	CLAVATA3/ESR (CLE)-related protein 16, partial [Cucurbita argyrosperma subsp. so...	[more]

BLAST of CmUC01G006200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9H6	2.1e-08	41.67	CLAVATA3/ESR (CLE)-related protein 17 OS=Arabidopsis thaliana OX=3702 GN=CLE17 P...	[more]

BLAST of CmUC01G006200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSY2	4.2e-28	71.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G570370 PE=4 SV=1	[more]
A0A5A7TY55	7.2e-28	72.28	CLAVATA3/ESR (CLE)-related protein 17-like OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3AUM2	7.2e-28	72.28	CLAVATA3/ESR (CLE)-related protein 17-like OS=Cucumis melo OX=3656 GN=LOC1034830...	[more]
A0A178WDE5	7.8e-06	41.67	CLE17 OS=Arabidopsis thaliana OX=3702 GN=AXX17_At1g65080 PE=4 SV=1	[more]

BLAST of CmUC01G006200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G70895.1	1.5e-09	41.67	CLAVATA3/ESR-RELATED 17	[more]
AT1G70895.2	1.5e-09	41.67	CLAVATA3/ESR-RELATED 17	[more]
AT2G01505.1	5.5e-04	34.31	CLAVATA3/ESR-RELATED 16	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..96
None	No IPR available	PANTHER	PTHR34545:SF7	CLAVATA3/ESR (CLE)-RELATED PROTEIN 16	coord: 3..96
IPR033249	CLAVATA3/ESR (CLE)-related protein, plant	PANTHER	PTHR34545	CLAVATA3/ESR (CLE)-RELATED PROTEIN 22	coord: 3..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC01G006200.1	CmUC01G006200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048731	system development
biological_process	GO:0009888	tissue development
cellular_component	GO:0110165	cellular anatomical entity