CmUC01G005370 (gene) Watermelon (USVL531) v1

Overview
NameCmUC01G005370
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
Descriptionprotein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like
LocationCmU531Chr01: 5432189 .. 5437883 (+)
RNA-Seq ExpressionCmUC01G005370
SyntenyCmUC01G005370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTCCATCCCCATAAGCATCTTTCACCGAGACAGATTGTGCATCTAGTTGTTCCTTAATCTGATGAAGAAATTTGAAAAGTCAACTAAACAAACAAAATTTTAATCATCTTGAAAGAGACAGCCACAACTCTGAAGAAAAAACTCTAGAAAGAAATAACAATTTCCATTCAAACACACTTTACCAGACTAATTTCAATAAATATTCAAGACAAGGACTGCAAAGCTTCTGTTTTCTAACCATAAATGATGAAATTTGGATATAAAAATAGAGAGAAGGAAATTAGGAAAGATAGGCATTATCTTGAAGAGTGAATTAGGCCTTGAAAGAGGTCTCAAGAGGGGAGGGTCCAAGTATCTCAAATTATTTGGTTATCTCGTAAGTGTGTTCAAGAGGGGAAGGTCCAAGTATCTCGAATTATTTTGTTATCTTGTGTGTGTTTTGGTTCCTATCACATTTGATAGTCCTAGGTTTGACATGATGTTGGAATGTACTTCTAAGCTTTTGATTGTCCTCAGTTTGACATGACTCACAACCTTGCCTTTGTATTATAGAAACAATTGTTTTCACTTAGAGAAAATGGAAGTACACATAAGCATACAAATGTCAAGCCCTACAAAAATCTCCTAAAAAGAAAAGGGGACCAACTAGGTATAATGTTGTCGATGGAATATTACAAAAAGTTGTCGAAATCGAAACCCAAAGAGAAACATGAAAACTCACCAAGGAGTAAGGACCAAACAGCACTAGGGTCCCTCTCCACTCCTCTAAAATCCTATTATTTCTTGCCCCCAAAGATCCCACAAGCACACACCCCTGCTAACCACAAGAATTGACCCTTCTCCTTAAAAGGCAGAAGGGCGAGAAACTCCTCGATCAAATCTCCAATAAACAATCTCTAATATTTATCAATTTTTGGAGGGAAAATGTCAGATTTCAGCTTCAATTTGGAAAAAGAGAAGAAACAGTCGGATCTTTAACTCCAGCATTTCCATTTCATTACTCAAGACAAAAAGCATCTTCTAAATTCTCCAGGCTTCAAAAGATCAATAATAATGCCATTGAAATCAGTTGTGTAATTGCTCAGATCTCAAGTTAATCCTCAAAGCGGTTGGGATCCTCAAAATTAGACCATCCCTCTCAGGGTTTAAAAGATTCACCATCATTCTACCGGATTCTTCAATCAAGATCAGGAAAAGTATTCCCTGCCTTTCTTCCCAAAAATGCCCCTTGTCTCCAATAGATTCAAAAGATGATTCAAACTCAGCAAGTGTGAGTAGTGAGGAAGATGACTATCAATCATTGACATCGATTCCAGATTCTCAATTTTCAGAAGATTAATATGGAGAAGTCATGGAAAGCTTATTCCAAAATTCAGTTGAAAACTCCGTTTCCCAGCCAAATCAAGTAAGTTTCACATCTTTGTTGCCTTCGCAGATCCTTCTAGCCTTAACACAATAGTGGAAGTTTGTGGGATCCAATTGGGTCAAGTTTCTTGTCAATTGCCTCATCAGGTGAAGTAAAAGTCCTTTCTTTTTTATCTTCAGTATGAAAATTATTTCATGGATTACCAGAGGGCTTGGGGATATTTCCAAATAGTTGCTCTAAAAAACCTCTTTTTTTTTTTTTTTTTTTGAAACGGAAACTAAACTTTTTCATTGATGTAATGAAAAGAGTCTAATGCTCAAGTTACAATGAAATGTTGAAACCAAGTTTCAAATGAGATAACATGACTACAATGGTTTATAACCAATGAGCGTATCCGACTATCTCAACTAGGTTGACACCTTAGCACCCTCCTCATCTTCCTTTACAAAAGTACATTGAAAAGAGCAACTTGAGAGACATAACGTCAAAAATACATAATTAATCTAAAGGAATGAAAGCATTCCAATTTAGGTATATGTCTTGGATAGAATATTCAGCAAAGTATTTGGATTGTGAATACCAAGTAGATGCAAGAAGCCGAGCGTTCCAACCAATCAATAGACTTGTCATGGAAGACCCTTTGATTGTGTTCAAACCAAATTTCTGATAATATGGCTTTTACCGCATTTGACCATAATAGTTGAGCTTTAGAGGGCAATGAAGGACCAACCAAAATTTGGGAAATGTTGTCGTGGAATGAAGACCCAAAAACCCGAACCTCATCAAAAATCAGAACTTTAGTTCTAATTCAGGAGACCAAAAAGGGAGGATTTTGTCATTATTTAATAAAATCAATGGGGAGTTCAGGAGATATTGGCTGGAATTTTGTGGAGTCTTTTGGAAAATTTGGAGGATTGATAATCTCATGGGAAGGGAGAGCCTGTGGATTTAGAAGTTTTAAAAGGAGGCTACATGTCAACGTTTTTGACTCATTGCAAGTGCATGAAGCCCATTTGGATTACAATTGATTATGGTTACTACAAGGAAAGAAGATTCCTTTGGTCAGAATTGTTATCCCTCTCTCATTATATTTCTGATCCTCGGTGCTTGGGAGGAGTCTTAAACATTATGCGCTAGGCATAAAATTGATTTCTGGTTGGTTGAATATCTGATCTCCTTTAAACTCGGCAATGGAAGAAGAATTTCATTTTGGCAAGTTACTTGGCTGAACACTTCTTCTTTGAGTTCTCTCTCCCCAAGTTTACTAAGATCTGCTTCCAATCCCAAAGGTTTTGTACTTGATCATTGCGATCCAGTTGCTCAACTATGGTCATTCATATTTAGAAGTTTTTTTTAAGGAAGATGAAGTGTTAGAATTGGATTCTTCAGGTTCATTCCCAGTTAATTCTCTTTTCAAACTCATTGGTGGCATCTCCTCCCATGATTATCAAGCTGTACAAACCTTTGTGGATTTCAAGCTGTCTACGGAGAGTTATATTACTTTTGGGTTAGGATCTTTGGGGCATTTATTTGCTCAAATTCTGAAGCTTCCAAGTCACTCTCTCTTGCCCTCAATTAGTTCTCTTTGTTCGGTGGATACTGAAGACTCTCTATTTAGTCTTGTTTTATTTCTTATTTTATATTGGCAAGTTTGAGTTCTAAGTCTTATTTTCTCTCATGTACTTTGAGCATTAGTCTCATTTCATTAATTCAATGAAAAGTTTGTTTTTATTTCAAAGAAAATATCTCAATGATGAACAGACACAAAACCAAACTCCTAAAAGAAACTATTCCACATTGTCCTCACAAAGTCACACGTCCAAAGCAAGTGATCCAGGTTTTCCTCCACCTTCCAACACGAGTACAACAGCAAGGGCCCACTAGCGAGGGTAGCTTCCTAGAAAGTTGGTCCATAATATTCACACAATCAAATAAAAGTTGTAAGGAAAAGAACTTAACTTTCTTAGGAATCTTAATCCTCCATAAGAAGTCAAAAACAAATTCGCTAATGGGAGTCGGATCCAATAAATGCCGAAAAAAGGACTTACAAGAGAAACCCACTAGGGATCAAGACTCCAAATACGAATATCCCTTCTCCCAAGAATAAAATTAACCTCCCCTATCAAGGACAGAAGAGAGGCAACATTTGTTGTTTCCTCATCGATCAACAAACGGCAACAACCAAGCTCCTCGACCAAACCAACAGATTAGAGATTATATAATTTTTAAAGAAAGATAAATGATATAAACAAGAAAATGAGGAGCAGAGAGGTTTATCCCCCACCCACTAATCTTCCCAAAAATATGTTTTCTTACCTTTCCCCACCACACAACAAACGAGATGGGAAAAGGAGGGTAGCTCTCGAGAAATATCCTTCCATAGATTCTGAAATGTGCCTCTAACCCCACTCAACGACCACTCAAATGGATGAGTCATGCTTCCTAACAATGACCCTATGCCATAAAGATTCATTTTCAAGGGGAAAATGCCATAACCATTTTGCCAACAAAGCCCTTTTTTTTTGTCCTTACCAAGGACAAAACTTTATGCCTATTTACTATTGTTCCCACTACTAACTTTACTCCTCATTTCAACCTTTATTTTCTCCCTCTCTCTCTATAGTGTTTAACTCTCAGTTTTCTTTCCAACAGAAAATCTTATGATCTCTCTTTGATCTCTAATAATTTCCTCATTTCCCTTCTTCATACCATAAACTCATGACCTTTTTTCCTTCTCTTCTTCTTCTTCCTTCCTCCATTTCTCTTCTTCTAAAGAAACACAAAACAAAAACAACCCTCTTTCCAGTTTTTTTTTAAAGAAGGACCATGTTCAATATTATCAATGATGTCAATCCCTTTATGATCTCCTTCACATTGTTCTTCTTGATCTCTTCGTGGCATGCAAATTAAACCCACTTCTTGTTTCTTCTCTTCCTTTGATATTCATCTTGAATCACTACTTGATTTACTACCTACCTCCTAGTTAAGAAAAAGGTTCTCTTATAAACCCCCAAAGATGAGATCCTTCTTCCACCATGACAAAAAGCTGGTCTTTGAAAGATTACTCTATTTCTCTTTTTTTTCCTTTTTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTTTCCTTGATCTTTTTAATTTTCTGCTTTTTTATTAATGGATTTGTTCTCATAATCATCATCCAATAATCCCACTACTTATACCACCACCACCATCACGACTACCACCTCAGCGTCGCCAGTTGTTTCCGTCGTCCACCACCACCCCAAGCCGGTACGAGAACCAAAAATGGAAAGATTCGAACACGTTCTATCAAAACCTTCAGAACCACCGGCCACCATTGGCTCTGCAGATGTACAGCAGCGCTCACGTGCTGGAATTTCTGGTTACTCAGTGGCAGATGTTGGCTTTGCTAGTAGCTAGCTAAACTGTAATAGCGATTGGTTGAGTGTATAAATCTGTTTGCATTTCATCGAAGGACAGATCCTTTTCTTTGGAGAATAAATTGATTTTTGATCACGTATGCCATCCATTGCTACATATGCGACTTTGGGCGCAAGTGATCTCAGGATGAATAAGTCAACTAGCTGTGCTTGTAGCCCTTCTAATTACATGGCTCCCCTTAGAACTAAACAACTTGGTGGATAGAATATTGGAGCGAGAAACACAAACTACATCCGTTTTCCAAACAAATACACATTTGCAGAAAAGAAACTGAAAATCATATATTTGATAATAAACGTGTTAAAATGAAAACAAAAGATAAGCAAAAGCCATCACATAAAATCGGCGTCAAGGTCTTTATCGCTGTGCTACTAAGAACATTTCTGAACTATAATCGACTGGGAGATTCCATTCCTCTTAAATTAGCTCAATAAGTTGCCCTAATTTCCCTCAAAGAGCATACGGACTGGTTTGCTCACATAAATGAAAACGTAGAAAAGTATAAATTTAAAACCATGAAGAAACTAGAAACTAAACAAACATTACCTTGTTCTCCATTGACTGCATGAGTGGAGAATCAATAGATCCAGAGTCATTCACTTGAGTGGCTCTAATGCTCAAGTTCCGGCTCGAACCCCATTTTGGGAATGTTCCTTCAGCACGGCTATTTTTCGCAATATTACTGCTCTTACTACGGACGCCGGTGGGGGATGTGGAGGTAATTGAGGGGAAAACGGCGGTGCAAACACAGGTGGAAGTGATTTGGCGGGAGACAACCGAAAAAGGTTGGTTGCGGTGAACGAACAATGGGAGAACCCGACGGAACGCGACATGAGGAACCTTAATCATCATCATCAAAGTCTTAGCCGCAGCTGA

mRNA sequence

ATGTCAGGGGAAGGTCCAAATCTCAAGTTAATCCTCAAAGCGGTTGGGATCCTCAAAATTAGACCATCCCTCTCAGGGTTTAAAAGATTCACCATCATTCTACCGGATTCTTCAATCAAGATCAGGAAAAGTATTCCCTGCCTTTCTTCCCAAAAATGCCCCTTGTCTCCAATAGATTCAAAAGATGATTCAAACTCAGCAAATCCTTCTAGCCTTAACACAATAGTGGAAGTTTGTGGGATCCAATTGGGTCAAGTTTCTTGTCAATTGCCTCATCAGCGTCGCCAGTTGTTTCCGTCGTCCACCACCACCCCAAGCCGGTACGAGAACCAAAAATGGAAAGATTCGAACACGTTCTATCAAAACCTTCAGAACCACCGGCCACCATTGGCTCTGCAGATGTACAGCAGCGCTCACGTGCTGGAATTTCTGGTTACTCAGTGGCAGATATCCAGAGTCATTCACTTGAGTGGCTCTAATGCTCAAGTTCCGGCTCGAACCCCATTTTGGGAATGTTCCTTCAGCACGGCTATTTTTCGCAATATTACTGCTCTTACTACGGACGCCGGTGGGGGATGTGGAGGGGAAAACGGCGGTGCAAACACAGGTGGAAGTGATTTGGCGGGAGACAACCGAAAAAGGTTGGTTGCGGTGAACGAACAATGGGAGAACCCGACGGAACGCGACATGAGGAACCTTAATCATCATCATCAAAGTCTTAGCCGCAGCTGA

Coding sequence (CDS)

ATGTCAGGGGAAGGTCCAAATCTCAAGTTAATCCTCAAAGCGGTTGGGATCCTCAAAATTAGACCATCCCTCTCAGGGTTTAAAAGATTCACCATCATTCTACCGGATTCTTCAATCAAGATCAGGAAAAGTATTCCCTGCCTTTCTTCCCAAAAATGCCCCTTGTCTCCAATAGATTCAAAAGATGATTCAAACTCAGCAAATCCTTCTAGCCTTAACACAATAGTGGAAGTTTGTGGGATCCAATTGGGTCAAGTTTCTTGTCAATTGCCTCATCAGCGTCGCCAGTTGTTTCCGTCGTCCACCACCACCCCAAGCCGGTACGAGAACCAAAAATGGAAAGATTCGAACACGTTCTATCAAAACCTTCAGAACCACCGGCCACCATTGGCTCTGCAGATGTACAGCAGCGCTCACGTGCTGGAATTTCTGGTTACTCAGTGGCAGATATCCAGAGTCATTCACTTGAGTGGCTCTAATGCTCAAGTTCCGGCTCGAACCCCATTTTGGGAATGTTCCTTCAGCACGGCTATTTTTCGCAATATTACTGCTCTTACTACGGACGCCGGTGGGGGATGTGGAGGGGAAAACGGCGGTGCAAACACAGGTGGAAGTGATTTGGCGGGAGACAACCGAAAAAGGTTGGTTGCGGTGAACGAACAATGGGAGAACCCGACGGAACGCGACATGAGGAACCTTAATCATCATCATCAAAGTCTTAGCCGCAGCTGA

Protein sequence

MSGEGPNLKLILKAVGILKIRPSLSGFKRFTIILPDSSIKIRKSIPCLSSQKCPLSPIDSKDDSNSANPSSLNTIVEVCGIQLGQVSCQLPHQRRQLFPSSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFLVTQWQISRVIHLSGSNAQVPARTPFWECSFSTAIFRNITALTTDAGGGCGGENGGANTGGSDLAGDNRKRLVAVNEQWENPTERDMRNLNHHHQSLSRS
Homology
[Close]
BLAST of CmUC01G005370 vs. NCBI nr
Match: XP_022999096.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita maxima])

HSP 1 Score: 73.6 bits (179), Expect = 2.7e-09
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 100 SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL 145
           SSTTTPSRYENQK +D NTF Q L+NHRPPLALQM S AHVLEFL
Sbjct: 106 SSTTTPSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFL 150

[Close]
BLAST of CmUC01G005370 vs. NCBI nr
Match: XP_022946684.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita moschata] >KAG6599341.1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030331.1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 73.6 bits (179), Expect = 2.7e-09
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 100 SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL 145
           SSTTTPSRYENQK +D NTF Q L+NHRPPLALQM S AHVLEFL
Sbjct: 33  SSTTTPSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFL 77

[Close]
BLAST of CmUC01G005370 vs. NCBI nr
Match: XP_023546935.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 73.6 bits (179), Expect = 2.7e-09
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 100 SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL 145
           SSTTTPSRYENQK +D NTF Q L+NHRPPLALQM S AHVLEFL
Sbjct: 34  SSTTTPSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFL 78

[Close]
BLAST of CmUC01G005370 vs. NCBI nr
Match: KAB1202527.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 [Morella rubra])

HSP 1 Score: 71.6 bits (174), Expect = 1.0e-08
Identity = 35/46 (76.09%), Postives = 39/46 (84.78%), Query Frame = 0 

Query: 99  PSSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL 145
           PSSTTTPSRYENQK +D NTF Q L+NH+PPL+L M S AHVLEFL
Sbjct: 34  PSSTTTPSRYENQKRRDWNTFCQYLRNHKPPLSLPMCSGAHVLEFL 79

[Close]
BLAST of CmUC01G005370 vs. NCBI nr
Match: KAE8725816.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 [Hibiscus syriacus])

HSP 1 Score: 70.5 bits (171), Expect = 2.3e-08
Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = 0 

Query: 99  PSSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFLV 146
           P STTTPSRYENQK +D NTF Q L+NHRPPL+L M S+ HVLEFL+
Sbjct: 36  PPSTTTPSRYENQKRRDWNTFCQYLRNHRPPLSLSMSSAVHVLEFLL 82

[Close]
BLAST of CmUC01G005370 vs. ExPASy Swiss-Prot
Match: Q6NNI3 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana OX=3702 GN=LSH1 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.1e-08
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = 0 

Query: 91  PHQRRQLFPSSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL 145
           P+   QL P S+   SRYENQK +D NTF Q L+NHRPPL+L   S AHVLEFL
Sbjct: 12  PNSSTQLTPPSS---SRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFL 62

[Close]
BLAST of CmUC01G005370 vs. ExPASy Swiss-Prot
Match: Q9FGH2 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 OS=Arabidopsis thaliana OX=3702 GN=LSH5 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.3e-08
Identity = 29/45 (64.44%), Postives = 36/45 (80.00%), Query Frame = 0 

Query: 100 SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL 145
           SS+++PSRYE+QK +D NTF Q L+NH+PPL L   S AHVLEFL
Sbjct: 12  SSSSSPSRYESQKRRDWNTFLQYLRNHKPPLNLSRCSGAHVLEFL 56

[Close]
BLAST of CmUC01G005370 vs. ExPASy Swiss-Prot
Match: Q9LMK2 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LSH6 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.3e-08
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 0 

Query: 100 SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL 145
           S   TPSRYE+QK +D NTF Q L+NH+PPLAL   S AHV+EFL
Sbjct: 24  SPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFL 68

[Close]
BLAST of CmUC01G005370 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.5e-07
Identity = 30/45 (66.67%), Postives = 33/45 (73.33%), Query Frame = 0 

Query: 100 SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL 145
           S T   SRYENQK +D NTF Q L+NHRPPL+L   S AHVLEFL
Sbjct: 41  SGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFL 85

[Close]
BLAST of CmUC01G005370 vs. ExPASy Swiss-Prot
Match: B8AH02 (Protein G1-like3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_05696 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.6e-07
Identity = 29/41 (70.73%), Postives = 31/41 (75.61%), Query Frame = 0 

Query: 104 TPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL 145
           TPSRYE QK +D NTF Q L+NHRPPL L   S AHVLEFL
Sbjct: 70  TPSRYEAQKRRDWNTFGQYLRNHRPPLGLAQCSGAHVLEFL 110

[Close]
BLAST of CmUC01G005370 vs. ExPASy TrEMBL
Match: A0A6J1KC51 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like OS=Cucurbita maxima OX=3661 GN=LOC111493577 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-09
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 100 SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL 145
           SSTTTPSRYENQK +D NTF Q L+NHRPPLALQM S AHVLEFL
Sbjct: 106 SSTTTPSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFL 150

[Close]
BLAST of CmUC01G005370 vs. ExPASy TrEMBL
Match: A0A6J1G4J5 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like OS=Cucurbita moschata OX=3662 GN=LOC111450676 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-09
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 100 SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL 145
           SSTTTPSRYENQK +D NTF Q L+NHRPPLALQM S AHVLEFL
Sbjct: 33  SSTTTPSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFL 77

[Close]
BLAST of CmUC01G005370 vs. ExPASy TrEMBL
Match: A0A6A1URV5 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Morella rubra OX=262757 GN=CJ030_MR8G028566 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.0e-09
Identity = 35/46 (76.09%), Postives = 39/46 (84.78%), Query Frame = 0 

Query: 99  PSSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL 145
           PSSTTTPSRYENQK +D NTF Q L+NH+PPL+L M S AHVLEFL
Sbjct: 34  PSSTTTPSRYENQKRRDWNTFCQYLRNHKPPLSLPMCSGAHVLEFL 79

[Close]
BLAST of CmUC01G005370 vs. ExPASy TrEMBL
Match: A0A5D3BFP5 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G001100 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-08
Identity = 42/85 (49.41%), Postives = 49/85 (57.65%), Query Frame = 0 

Query: 60  SKDDSNSANPSSLNTIVEVCGIQLGQVSCQLPHQRRQLFPSSTTTPSRYENQKWKDSNTF 119
           S+  SN+ NP++  T                P        +S TTPSRYENQK +D NTF
Sbjct: 5   SESSSNNDNPTTTTTTT-------------TPPTATTSAAASATTPSRYENQKRRDWNTF 64

Query: 120 YQNLQNHRPPLALQMYSSAHVLEFL 145
            Q L+NHRPPLALQM S AHVLEFL
Sbjct: 65  CQYLRNHRPPLALQMCSGAHVLEFL 76

[Close]
BLAST of CmUC01G005370 vs. ExPASy TrEMBL
Match: A0A6A3CAP5 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00008138pilonHSYRG00009 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-08
Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = 0 

Query: 99  PSSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFLV 146
           P STTTPSRYENQK +D NTF Q L+NHRPPL+L M S+ HVLEFL+
Sbjct: 36  PPSTTTPSRYENQKRRDWNTFCQYLRNHRPPLSLSMSSAVHVLEFLL 82

[Close]
BLAST of CmUC01G005370 vs. TAIR 10
Match: AT5G28490.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 60.1 bits (144), Expect = 2.9e-09
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = 0 

Query: 91  PHQRRQLFPSSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL 145
           P+   QL P S+   SRYENQK +D NTF Q L+NHRPPL+L   S AHVLEFL
Sbjct: 12  PNSSTQLTPPSS---SRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFL 62

[Close]
BLAST of CmUC01G005370 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 59.7 bits (143), Expect = 3.8e-09
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 0 

Query: 100 SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL 145
           S   TPSRYE+QK +D NTF Q L+NH+PPLAL   S AHV+EFL
Sbjct: 24  SPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFL 68

[Close]
BLAST of CmUC01G005370 vs. TAIR 10
Match: AT5G58500.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 59.7 bits (143), Expect = 3.8e-09
Identity = 29/45 (64.44%), Postives = 36/45 (80.00%), Query Frame = 0 

Query: 100 SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL 145
           SS+++PSRYE+QK +D NTF Q L+NH+PPL L   S AHVLEFL
Sbjct: 12  SSSSSPSRYESQKRRDWNTFLQYLRNHKPPLNLSRCSGAHVLEFL 56

[Close]
BLAST of CmUC01G005370 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-08
Identity = 30/45 (66.67%), Postives = 33/45 (73.33%), Query Frame = 0 

Query: 100 SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL 145
           S T   SRYENQK +D NTF Q L+NHRPPL+L   S AHVLEFL
Sbjct: 41  SGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFL 85

[Close]
BLAST of CmUC01G005370 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 57.4 bits (137), Expect = 1.9e-08
Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = 0 

Query: 100 SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL 145
           S +   SRYENQK +D NTF Q L+NHRPPL+L   S AHVLEFL
Sbjct: 47  SPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFL 91

The following BLAST results are available for this feature:
BLAST of CmUC01G005370 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022999096.12.7e-0982.22protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita maxima][more]
XP_022946684.12.7e-0982.22protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita moschata] >KAG6599341... [more]
XP_023546935.12.7e-0982.22protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita pepo subsp. pepo][more]
KAB1202527.11.0e-0876.09Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 [Morella rubra][more]
KAE8725816.12.3e-0872.34Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 [Hibiscus syriacus][more]
BLAST of CmUC01G005370 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6NNI34.1e-0861.11Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana OX=3702 GN=LS... [more]
Q9FGH25.3e-0864.44Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 OS=Arabidopsis thaliana OX=3702 GN=LS... [more]
Q9LMK25.3e-0864.44Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LS... [more]
Q9LW681.5e-0766.67Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS... [more]
B8AH022.6e-0770.73Protein G1-like3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_05696 PE=3 SV=1[more]
BLAST of CmUC01G005370 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KC511.3e-0982.22protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1G4J51.3e-0982.22protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like OS=Cucurbita moschata OX=3662 GN... [more]
A0A6A1URV55.0e-0976.09Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Morella rubra OX=262757 GN=CJ030_M... [more]
A0A5D3BFP51.1e-0849.41Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like OS=Cucumis melo var. makuwa OX=1... [more]
A0A6A3CAP51.1e-0872.34Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 OS=Hibiscus syriacus OX=106335 GN=F3Y... [more]
BLAST of CmUC01G005370 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G28490.12.9e-0961.11Protein of unknown function (DUF640) [more]
AT1G07090.13.8e-0964.44Protein of unknown function (DUF640) [more]
AT5G58500.13.8e-0964.44Protein of unknown function (DUF640) [more]
AT3G23290.21.1e-0866.67Protein of unknown function (DUF640) [more]
AT2G31160.11.9e-0864.44Protein of unknown function (DUF640) [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006936ALOG domainPFAMPF04852DUF640coord: 101..152
e-value: 2.4E-11
score: 43.9
IPR006936ALOG domainPROSITEPS51697ALOGcoord: 107..145
score: 11.326829
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 221..243
NoneNo IPR availablePANTHERPTHR31165:SF95PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 3coord: 99..146
IPR040222ALOG familyPANTHERPTHR31165PROTEIN G1-LIKE2coord: 99..146

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC01G005370.1CmUC01G005370.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus