CmUC01G000530 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC01G000530
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Succinate dehydrogenase assembly factor 4, mitochondrial
Location	CmU531Chr01: 376099 .. 376731 (+)
RNA-Seq Expression	CmUC01G000530
Synteny	CmUC01G000530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAGCAATCTCAGCCGTCTATTCTCGTCGCCGCCGACTCTCTCCGCGCTACCGGCGGCGAGTCGCCTGACTGCCAACTCGTTGAGCCGGCTCGTTAGCTCCTCGTCCAATCAACAACCTTCTCGATCGGAGCAAGGTGTGTCTAGCGAGGAACAACGAGAGGCCGGGAAAGGAAGTTTGCCGAATCAACACGAGGCTGCCATAGATGAACGAGACGGTGAAGATGAAGGAGTTGATATAAAAGAAGCGACCGGCGAGGTCGGTGGACCTAAAGGCCCCGAGCCCACCCGCTACGGCGATTGGGAACGAAACGGTCGGTGCTACGATTTCTGACATTTCGAGGTTAGATTGTGAACCAGATCTTAGGATGATATGATTTCTGAAACTCAATTTGATGACCTTTGTTTTCTTTAATCTGAGATCTTGTTTCGTTTTTTCTGGAAATTCAAATTCTCGTGATTTGTATCCAAAAATAAGTTCGAAATTGAAAAAATTGGATCATGAAATTACGAAACATAATTTTATTGAATTGGATCAATACCTCCAATTGAAGGAATAAGGGATCCATGGATAAAGGCGCTAAATGGTGATTCAACATGGATTCGACATCTTGGAACCAAGCCAATTTAG

mRNA sequence

ATGTCGAGCAATCTCAGCCGTCTATTCTCGTCGCCGCCGACTCTCTCCGCGCTACCGGCGGCGAGTCGCCTGACTGCCAACTCGTTGAGCCGGCTCGTTAGCTCCTCGTCCAATCAACAACCTTCTCGATCGGAGCAAGGTGTGTCTAGCGAGGAACAACGAGAGGCCGGGAAAGGAAGTTTGCCGAATCAACACGAGGCTGCCATAGATGAACGAGACGCCCACCCGCTACGGCGATTGGGAACGAAACGGTCGGTGCTACGATTTCTGACATTTCGAGGAATAAGGGATCCATGGATAAAGGCGCTAAATGGTGATTCAACATGGATTCGACATCTTGGAACCAAGCCAATTTAG

Coding sequence (CDS)

ATGTCGAGCAATCTCAGCCGTCTATTCTCGTCGCCGCCGACTCTCTCCGCGCTACCGGCGGCGAGTCGCCTGACTGCCAACTCGTTGAGCCGGCTCGTTAGCTCCTCGTCCAATCAACAACCTTCTCGATCGGAGCAAGGTGTGTCTAGCGAGGAACAACGAGAGGCCGGGAAAGGAAGTTTGCCGAATCAACACGAGGCTGCCATAGATGAACGAGACGCCCACCCGCTACGGCGATTGGGAACGAAACGGTCGGTGCTACGATTTCTGACATTTCGAGGAATAAGGGATCCATGGATAAAGGCGCTAAATGGTGATTCAACATGGATTCGACATCTTGGAACCAAGCCAATTTAG

Protein sequence

MSSNLSRLFSSPPTLSALPAASRLTANSLSRLVSSSSNQQPSRSEQGVSSEEQREAGKGSLPNQHEAAIDERDAHPLRRLGTKRSVLRFLTFRGIRDPWIKALNGDSTWIRHLGTKPI

Homology

[Close]

BLAST of CmUC01G000530 vs. NCBI nr
Match: KGN49871.1 (hypothetical protein Csa_000062 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 4.8e-20
Identity = 63/72 (87.50%), Postives = 66/72 (91.67%), Query Frame = 0


Query: 1  MSSNLSRLFSSPPTLSALPAASRLTANSLSRLVSSSSNQQPSRSEQGVSSEEQREAGKGS 60
          MSSNLSRLFSSPPTLSALPA SRLT NSLSR VSSSSNQQPSR E+GVSSEEQREAGKGS
Sbjct: 1  MSSNLSRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQPSRLEKGVSSEEQREAGKGS 60

Query: 61 LPNQHEAAIDER 73
           PN+HEAA D+R
Sbjct: 61 SPNRHEAAGDDR 72

[Close]

BLAST of CmUC01G000530 vs. NCBI nr
Match: KAA0042555.1 (succinate dehydrogenase assembly factor 4 [Cucumis melo var. makuwa] >TYK05959.1 succinate dehydrogenase assembly factor 4 [Cucumis melo var. makuwa])

HSP 1 Score: 106.7 bits (265), Expect = 1.4e-19
Identity = 62/72 (86.11%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1  MSSNLSRLFSSPPTLSALPAASRLTANSLSRLVSSSSNQQPSRSEQGVSSEEQREAGKGS 60
          MSS+LSRLFSSPPTLSALP   RLT+NSLSR VSSSSNQQPSRSEQGVSSEEQREA KGS
Sbjct: 1  MSSHLSRLFSSPPTLSALPTVGRLTSNSLSRFVSSSSNQQPSRSEQGVSSEEQREAEKGS 60

Query: 61 LPNQHEAAIDER 73
           PNQHEAA D+R
Sbjct: 61 SPNQHEAAGDDR 72

[Close]

BLAST of CmUC01G000530 vs. NCBI nr
Match: XP_022995844.1 (succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita maxima])

HSP 1 Score: 94.0 bits (232), Expect = 9.4e-16
Identity = 55/74 (74.32%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 1  MSSNLSRLFSSPPTLSALPAASRLTANSLSRLVSSSSNQQPSRSEQGVSSEEQREAGKGS 60
          MSSNL+RLF SPP+L+AL A +R+T+ S+SRLVSSS+NQQPSR EQGV  EEQREAGKGS
Sbjct: 1  MSSNLTRLF-SPPSLTALSAVNRVTSTSVSRLVSSSANQQPSRLEQGVPGEEQREAGKGS 60

Query: 61 LPNQHEAAIDERDA 75
          LP+QHEAA D+RD+
Sbjct: 61 LPDQHEAAGDDRDS 73

[Close]

BLAST of CmUC01G000530 vs. NCBI nr
Match: XP_022957978.1 (succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita moschata])

HSP 1 Score: 92.0 bits (227), Expect = 3.6e-15
Identity = 55/74 (74.32%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 1  MSSNLSRLFSSPPTLSALPAASRLTANSLSRLVSSSSNQQPSRSEQGVSSEEQREAGKGS 60
          MSSNL+RLF SPP+L+AL A +R T+ S+SRLVSSS+NQQPSR EQGV  EEQREAGKGS
Sbjct: 1  MSSNLTRLF-SPPSLTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKGS 60

Query: 61 LPNQHEAAIDERDA 75
          LP+QHEAA D+RD+
Sbjct: 61 LPDQHEAAGDDRDS 73

[Close]

BLAST of CmUC01G000530 vs. NCBI nr
Match: XP_023532848.1 (succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 90.9 bits (224), Expect = 8.0e-15
Identity = 54/74 (72.97%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 1  MSSNLSRLFSSPPTLSALPAASRLTANSLSRLVSSSSNQQPSRSEQGVSSEEQREAGKGS 60
          MSSNL+RLF SPP+L++L A +R T+ S+SRLVSSS+NQQPSR EQGV  EEQREAGKGS
Sbjct: 1  MSSNLTRLF-SPPSLTSLSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKGS 60

Query: 61 LPNQHEAAIDERDA 75
          LP+QHEAA D+RD+
Sbjct: 61 LPDQHEAAGDDRDS 73

[Close]

BLAST of CmUC01G000530 vs. ExPASy TrEMBL
Match: A0A0A0KQ66 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cucumis sativus OX=3659 GN=Csa_5G139490 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.3e-20
Identity = 63/72 (87.50%), Postives = 66/72 (91.67%), Query Frame = 0


Query: 1  MSSNLSRLFSSPPTLSALPAASRLTANSLSRLVSSSSNQQPSRSEQGVSSEEQREAGKGS 60
          MSSNLSRLFSSPPTLSALPA SRLT NSLSR VSSSSNQQPSR E+GVSSEEQREAGKGS
Sbjct: 1  MSSNLSRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQPSRLEKGVSSEEQREAGKGS 60

Query: 61 LPNQHEAAIDER 73
           PN+HEAA D+R
Sbjct: 61 SPNRHEAAGDDR 72

[Close]

BLAST of CmUC01G000530 vs. ExPASy TrEMBL
Match: A0A5A7TMD3 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00530 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 6.8e-20
Identity = 62/72 (86.11%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1  MSSNLSRLFSSPPTLSALPAASRLTANSLSRLVSSSSNQQPSRSEQGVSSEEQREAGKGS 60
          MSS+LSRLFSSPPTLSALP   RLT+NSLSR VSSSSNQQPSRSEQGVSSEEQREA KGS
Sbjct: 1  MSSHLSRLFSSPPTLSALPTVGRLTSNSLSRFVSSSSNQQPSRSEQGVSSEEQREAEKGS 60

Query: 61 LPNQHEAAIDER 73
           PNQHEAA D+R
Sbjct: 61 SPNQHEAAGDDR 72

[Close]

BLAST of CmUC01G000530 vs. ExPASy TrEMBL
Match: A0A6J1K722 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111491251 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.6e-16
Identity = 55/74 (74.32%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 1  MSSNLSRLFSSPPTLSALPAASRLTANSLSRLVSSSSNQQPSRSEQGVSSEEQREAGKGS 60
          MSSNL+RLF SPP+L+AL A +R+T+ S+SRLVSSS+NQQPSR EQGV  EEQREAGKGS
Sbjct: 1  MSSNLTRLF-SPPSLTALSAVNRVTSTSVSRLVSSSANQQPSRLEQGVPGEEQREAGKGS 60

Query: 61 LPNQHEAAIDERDA 75
          LP+QHEAA D+RD+
Sbjct: 61 LPDQHEAAGDDRDS 73

[Close]

BLAST of CmUC01G000530 vs. ExPASy TrEMBL
Match: A0A6J1H1T7 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111459345 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.7e-15
Identity = 55/74 (74.32%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 1  MSSNLSRLFSSPPTLSALPAASRLTANSLSRLVSSSSNQQPSRSEQGVSSEEQREAGKGS 60
          MSSNL+RLF SPP+L+AL A +R T+ S+SRLVSSS+NQQPSR EQGV  EEQREAGKGS
Sbjct: 1  MSSNLTRLF-SPPSLTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKGS 60

Query: 61 LPNQHEAAIDERDA 75
          LP+QHEAA D+RD+
Sbjct: 61 LPDQHEAAGDDRDS 73

The following BLAST results are available for this feature:

BLAST of CmUC01G000530 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49871.1	4.8e-20	87.50	hypothetical protein Csa_000062 [Cucumis sativus]	[more]
KAA0042555.1	1.4e-19	86.11	succinate dehydrogenase assembly factor 4 [Cucumis melo var. makuwa] >TYK05959.1...	[more]
XP_022995844.1	9.4e-16	74.32	succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita maxima]	[more]
XP_022957978.1	3.6e-15	74.32	succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita moschata]	[more]
XP_023532848.1	8.0e-15	72.97	succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita pepo subsp. ...	[more]

BLAST of CmUC01G000530 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC01G000530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQ66	2.3e-20	87.50	Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cucumis sativus OX=3...	[more]
A0A5A7TMD3	6.8e-20	86.11	Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cucumis melo var. ma...	[more]
A0A6J1K722	4.6e-16	74.32	Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cucurbita maxima OX=...	[more]
A0A6J1H1T7	1.7e-15	74.32	Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cucurbita moschata O...	[more]

BLAST of CmUC01G000530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC01G000530.1	CmUC01G000530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034553	mitochondrial respiratory chain complex II assembly
cellular_component	GO:0005739	mitochondrion