Clc11G19840 (gene) Watermelon (cordophanus) v2

Overview
NameClc11G19840
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr11: 30300392 .. 30303990 (-)
RNA-Seq ExpressionClc11G19840
SyntenyClc11G19840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAAGCAACGGCGTTCGTTTAGAGCTTTGCTTTTGTCCTGCCGCTGGGGGCGCCGAAGGTTGTGCAATAACGAAACCGGTGAGTTCTTAAGATTTTCTTCTTCTTTCTGATTTTCTTTAGGTTAATCCACAGTTTTCTGTTTGGTTGCCGAGAAAGAGATCAGGAATTAATTTTTTCTCGACGCCGAAGAACTTGGTGAATAATGATTCTGAACTTTGTATTACTTGAGTTTAATTTGGAACCTCTCTCTCTTGTGGTTTTTTAGACCAAACGGTGAAGGAATCTGGACTAGTTTGCATCTTTGAAGCCTTCTAATATCATAATTCCCAGGCAGTAGGACAGATTTCTTAGTATATGGAATTTGCTGTATTTAGGGTTCTGATATCATTTTCTTTAATTTGGTTTTTCTGTTCCTGTGGCGGGGCTCAGTTCGCTTCTCGAGTTCAATTTTTTTTTTTTCACTAAATATCTGATTGGAGAACAGTTTAGGAAGGAAATATTAGTTAATGAAGTTGAGAAACCTCCTGTAGTTCAATATTGAGGATGATTATCTATCCATTTGTATCCATTAGTTGCTCTAACATTTTTAGTGTCAGAAGTCAATCGTTGCATTGTTTGAAGTACAAGAATTTAATCGTTAGAAATAAATGGATCAGGACCAAGGTTATATAAGAGCCAAATTTCAAGGGGATAAGAGTGAGTAAGTACTTAGTACTTGTTAAGATTTTCATTGTTAGAGATTGGGGTGTCCAAATAACCCGCCAACCCGAATAACCCAGATTACCCAACCTGAATAATAAGAGTCGGGTTGGGTTAGTTTAAAATTTGGGTTGGGTCTCAAGTTGCAATTTTGAAAAATTTGGGTTGACCCAACCCAACCCGAATTTCTAATATTAATATAAAATATATATGTATATATTATAAGTTTAAGTTAGGGTTAAGTACTATTTTATACTTTATCTTGGATCAATGGATATGCCAATTATTGTTTCATTGATATGCCAATGTGTTTTACCAGAAAAATGGGGGAAAAGAAAAGAAAAAGAAAAAACACACAACCCCACAACCCAACCCGAATTTTAAGAGTTGGGTTGGGTTGGGTACCATATTTAGGTTATTCGGGTAGTTAACCCGACCAACCCTAATTTTCGGGTTGATCCACAGATGCCCCCAACCCAACCCAACCACCCATGTACACTCCTAGTCAAAGATTAAGTGTTTACTTTTTTAGATATCAAGATTAAAGTTAAACACGGTTATGATTTGAGTCTCGGTAGAGTTTACATTATCAAGGGGGTAAGAATGAGTTTAAGCTTTTCATTTAGACGGTAGCTGTAGCCCTTAAGGTTTTCGTTATCAGAGATTAGCTTTTCAATTAGATGGTAGCTGTAGGACTTGTTAAGATTTTCGTTATGAGAGATCAAGTGTTTGCTTTTCTAGATATTGAGATTAAAATTAAACAAGATTAGGATTTGACTCTCGATAAGGTTTTCACTATCAAGGTGCTAAGAATGAGTTGAAGCCTTTCAATTAGACGGTAGCTGTAGTACTTGTTAAGGTTTTTGTTATCAGAGATTAAGTGTTTGTTTTTCTAGCTATTGAGATTGAAGTTAAACAGGGTTATGATTTGACTCTTAATAAGGTTTTCATTATCAAGGGGCTGAGATTGAGTTTAAGCTTTTCAATTAGATGGTAGCTGTAGGACTTGTTAAGATTTTCGTTATGAGAGATCAAGTGTTTGCTTTTCCAGTTATTGAGATTAAAGTTAAACAGGGTTATGATTTGACTCCCATTTTGGAATTTGTTTTATTGTGGCATTATTTGATGGAGATGATCTTGATCCAATGCAGCATTTGTTAGTTCTGCAAAAACAGTTTTCTTGTCGATTGTGATATATATATTAATATCAAACTATCTTTTTATGTTTTGATGAGTAGGTTTAATACGAAGGCCGTATCTAGATTATCTGGTTCATTGACGGATAATGGAAGGTAAAGTCACTGTCCCACCTAAAAGAGATTGGAAACAAATGGGACATGAAGGGGCAACCGTGGCTGTTCATGAAGAAATGAAACGAGTGCAACGGCTTCCTTCTAACAGTACCTATGCTACTCATCGGTTGAAGGTTTTAAACAAAATTCTGCAGCTCTTATCAATTCAGGTTTGTATCATGTAACGACAGTAATCTATTTGATGAGTTCGTGTTAATAATTGATGTAGTAGGAGTAGGTAATTGGGGTACCTTGATCAAATCCTTAATTAATTAAGATTAGGATTAGGATTAGGATTAGAATTGGTTTCCTTCTAAGAAGCACAAATACGACATGAGGACGGTTACATGTCATCTTTCTTCTTTTAAATCTAGGACACAGACATGACAAAGACACATACATTAAGATATACATTTAAAAAAATATATCACTTTTATACAAGAAGGAAATTCATAGTCAATGAATCAAAATTTATTATATTTTGCCATATGTGTATTTAGTATACTTAACGAGTGTTTGATTTGTGTCTATCAAATGTTGGACTTACTTTGATTTACCACTAGTGTCTGACACATCTATGAAACTAACATGTCCAACAAGTGCTGAAGTGTCTAAATGTCAAACATGTATCAAACACTTTCATGCTAGCCAAAGTAAAGTATTCGTGCTTCCTAGGTTTCCTTCATCAATTTGTTTTCCAATTCACTCTAAGTAGAGAATTATATTCTTGTGTTCACAACATCTAAGGAAAATTTGAAAGGATTGCAGTTAAACTAGAGCTGTTTCTATTTCCGTGTTTGAAAAGGGAATTGTTATTTTCAATATAATTTAATTGCTAATGCCTAATCGTGTGATCGTTTGCTTTAGAGTTTATTTTTTATTCATTTGTTCATATTGATGAGTTTTTAGGTTTCACATTCATTTTAAAGCTTGTACTGGTATGAATTCTTTGCAGCTCGGTGGTATTATTTTATATTAATAATTTGCAATTTGCTAATTAGAAGCACAACTTATGGGTGTTGATTAGTAAGCTATTTTAATTATTCATAGGTATTATTTCTTTTGATAAGAGGCCCTTTTTATAGTTTGCCACCTTTTATTGTGAGTTTTTTGTACGCCCTTGTATTCTTTCATTTACTCTCAAGTTCAGTTACTTGTTAAAACAAAAAGTTAGAAGCACATCTTTTCATCTTAAGTTTTCTTTTTAATGGAGGAATGGGATTGCTATTGATGATCTGTTTTCCTATTTTTTTATTGGTAATTGCAGATATATTTTACTTCATATACACAAATTCAATTTCACTCTTCTCTCCGTCCATTTTCAGTTCATTTAGTGTTGAATAACATCGTAACCAAAACGATCTTAGTTTTGTTCCAAAGAGTATATACACCATAATTTCAACGTGTGCTGTTCTGTATTCGAGTCATAAACTTTCTCATGGTTGCTTAAATTTCTTGCAAAGTTACAAGTATTGTGGAATTTGATGAACATTGGTATCTGATATCTGTGATATATTTTGTGTTTGTTCGCTCATTTTCTTTTGTCAGAGAACTGTATCTCAGGAAGAGGAACTGGAGTTGCTGTTTGCTGGGCTTTCTCTGTGA

mRNA sequence

ATGGTAAGCAACGGCGTTCGTTTAGAGCTTTGCTTTTGTCCTGCCGCTGGGGGCGCCGAAGGTTGTGCAATAACGAAACCGATGGTAGCTGTAGGACTTGTTAAGATTTTCGTTATGAGAGATCAAGTGTTTGCTTTTCCAGTTATTGAGATTAAAGTTAAACAGGGTTATGATTTGACTCCCATTTTGGAATTTGTTTTATTGTGGCATTATTTGATGGAGATGATCTTGATCCAATGCAGCATTTGTAAAGTCACTGTCCCACCTAAAAGAGATTGGAAACAAATGGGACATGAAGGGGCAACCGTGGCTGTTCATGAAGAAATGAAACGAGTGCAACGGCTTCCTTCTAACAGTACCTATGCTACTCATCGGTTGAAGAGAACTGTATCTCAGGAAGAGGAACTGGAGTTGCTGTTTGCTGGGCTTTCTCTGTGA

Coding sequence (CDS)

ATGGTAAGCAACGGCGTTCGTTTAGAGCTTTGCTTTTGTCCTGCCGCTGGGGGCGCCGAAGGTTGTGCAATAACGAAACCGATGGTAGCTGTAGGACTTGTTAAGATTTTCGTTATGAGAGATCAAGTGTTTGCTTTTCCAGTTATTGAGATTAAAGTTAAACAGGGTTATGATTTGACTCCCATTTTGGAATTTGTTTTATTGTGGCATTATTTGATGGAGATGATCTTGATCCAATGCAGCATTTGTAAAGTCACTGTCCCACCTAAAAGAGATTGGAAACAAATGGGACATGAAGGGGCAACCGTGGCTGTTCATGAAGAAATGAAACGAGTGCAACGGCTTCCTTCTAACAGTACCTATGCTACTCATCGGTTGAAGAGAACTGTATCTCAGGAAGAGGAACTGGAGTTGCTGTTTGCTGGGCTTTCTCTGTGA

Protein sequence

MVSNGVRLELCFCPAAGGAEGCAITKPMVAVGLVKIFVMRDQVFAFPVIEIKVKQGYDLTPILEFVLLWHYLMEMILIQCSICKVTVPPKRDWKQMGHEGATVAVHEEMKRVQRLPSNSTYATHRLKRTVSQEEELELLFAGLSL
Homology
[Close]
BLAST of Clc11G19840 vs. NCBI nr
Match: KAA0036794.1 (uncharacterized protein E6C27_scaffold20G00830 [Cucumis melo var. makuwa] >TYJ95861.1 uncharacterized protein E5676_scaffold110G001550 [Cucumis melo var. makuwa])

HSP 1 Score: 109.4 bits (272), Expect = 2.7e-20
Identity = 57/74 (77.03%), Postives = 60/74 (81.08%), Query Frame = 0 

Query: 84  KVTVPPKRDWKQMGHEGATVAVHEEMKRVQRLPSNSTYATHRLK------------RTVS 143
           KVTVPPKRDWKQMGHE ATVAVHEEMKRVQ+ PSNSTYATHRL+            RTVS
Sbjct: 4   KVTVPPKRDWKQMGHEEATVAVHEEMKRVQKFPSNSTYATHRLRVLNKILQLLSIQRTVS 63

Query: 144 QEEELELLFAGLSL 146
           QEEELELLF+GLSL
Sbjct: 64  QEEELELLFSGLSL 77

[Close]
BLAST of Clc11G19840 vs. NCBI nr
Match: XP_004150100.1 (uncharacterized protein LOC101214758 [Cucumis sativus] >XP_004150101.1 uncharacterized protein LOC101214758 [Cucumis sativus] >KGN59879.1 hypothetical protein Csa_002033 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 2.9e-19
Identity = 55/74 (74.32%), Postives = 59/74 (79.73%), Query Frame = 0 

Query: 84  KVTVPPKRDWKQMGHEGATVAVHEEMKRVQRLPSNSTYATHRLK------------RTVS 143
           KV VP KRDWKQMGHEGATVAVHEEMKRVQ+ PSNSTYATHRL+            RT+S
Sbjct: 4   KVNVPTKRDWKQMGHEGATVAVHEEMKRVQQFPSNSTYATHRLRILNKILQLLSIQRTLS 63

Query: 144 QEEELELLFAGLSL 146
           QEEELELLF+GLSL
Sbjct: 64  QEEELELLFSGLSL 77

[Close]
BLAST of Clc11G19840 vs. NCBI nr
Match: XP_038898294.1 (uncharacterized protein LOC120085994 [Benincasa hispida] >XP_038898295.1 uncharacterized protein LOC120085994 [Benincasa hispida])

HSP 1 Score: 98.2 bits (243), Expect = 6.1e-17
Identity = 54/74 (72.97%), Postives = 56/74 (75.68%), Query Frame = 0 

Query: 84  KVTVPPKRDWKQMGHEGATVAVHEEMKRVQRLPSNSTYATHRLK------------RTVS 143
           K TV PKR WKQM H+ AT AVHEEMKRVQRLPSNSTYATHRL+            RTVS
Sbjct: 4   KFTVSPKRGWKQMEHKEATGAVHEEMKRVQRLPSNSTYATHRLRVLNKILQLLSIQRTVS 63

Query: 144 QEEELELLFAGLSL 146
           QEEELELLFAGLSL
Sbjct: 64  QEEELELLFAGLSL 77

[Close]
BLAST of Clc11G19840 vs. NCBI nr
Match: XP_022139403.1 (uncharacterized protein LOC111010342 [Momordica charantia] >XP_022139404.1 uncharacterized protein LOC111010342 [Momordica charantia])

HSP 1 Score: 95.9 bits (237), Expect = 3.0e-16
Identity = 49/74 (66.22%), Postives = 55/74 (74.32%), Query Frame = 0 

Query: 84  KVTVPPKRDWKQMGHEGATVAVHEEMKRVQRLPSNSTYATHR------------LKRTVS 143
           KV+ PPK +WKQMGHE  TV VH+EMKRVQ+LPSNS YATHR            ++RT S
Sbjct: 4   KVSAPPKNNWKQMGHEETTVTVHQEMKRVQQLPSNSAYATHRFRVLNKILQLLSIQRTAS 63

Query: 144 QEEELELLFAGLSL 146
           QEEELELLFAGLSL
Sbjct: 64  QEEELELLFAGLSL 77

[Close]
BLAST of Clc11G19840 vs. NCBI nr
Match: KAG6591989.1 (hypothetical protein SDJN03_14335, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.0 bits (219), Expect = 3.7e-14
Identity = 49/74 (66.22%), Postives = 54/74 (72.97%), Query Frame = 0 

Query: 84  KVTVPPKRDWKQMGHEGATVAVHEEMKRVQRLPSNSTYATHRLK------------RTVS 143
           KV+V PK D KQMGH+ A V V EEMKRVQ+LPSNSTYATHR++            RT S
Sbjct: 20  KVSVLPKNDGKQMGHQEAKVVVQEEMKRVQQLPSNSTYATHRMRVLNKILQLLSIQRTAS 79

Query: 144 QEEELELLFAGLSL 146
           QEEELELLFAGLSL
Sbjct: 80  QEEELELLFAGLSL 93

[Close]
BLAST of Clc11G19840 vs. ExPASy TrEMBL
Match: A0A5A7SZV0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001550 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.3e-20
Identity = 57/74 (77.03%), Postives = 60/74 (81.08%), Query Frame = 0 

Query: 84  KVTVPPKRDWKQMGHEGATVAVHEEMKRVQRLPSNSTYATHRLK------------RTVS 143
           KVTVPPKRDWKQMGHE ATVAVHEEMKRVQ+ PSNSTYATHRL+            RTVS
Sbjct: 4   KVTVPPKRDWKQMGHEEATVAVHEEMKRVQKFPSNSTYATHRLRVLNKILQLLSIQRTVS 63

Query: 144 QEEELELLFAGLSL 146
           QEEELELLF+GLSL
Sbjct: 64  QEEELELLFSGLSL 77

[Close]
BLAST of Clc11G19840 vs. ExPASy TrEMBL
Match: A0A0A0LFX0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851790 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.4e-19
Identity = 55/74 (74.32%), Postives = 59/74 (79.73%), Query Frame = 0 

Query: 84  KVTVPPKRDWKQMGHEGATVAVHEEMKRVQRLPSNSTYATHRLK------------RTVS 143
           KV VP KRDWKQMGHEGATVAVHEEMKRVQ+ PSNSTYATHRL+            RT+S
Sbjct: 4   KVNVPTKRDWKQMGHEGATVAVHEEMKRVQQFPSNSTYATHRLRILNKILQLLSIQRTLS 63

Query: 144 QEEELELLFAGLSL 146
           QEEELELLF+GLSL
Sbjct: 64  QEEELELLFSGLSL 77

[Close]
BLAST of Clc11G19840 vs. ExPASy TrEMBL
Match: A0A6J1CCW1 (uncharacterized protein LOC111010342 OS=Momordica charantia OX=3673 GN=LOC111010342 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.5e-16
Identity = 49/74 (66.22%), Postives = 55/74 (74.32%), Query Frame = 0 

Query: 84  KVTVPPKRDWKQMGHEGATVAVHEEMKRVQRLPSNSTYATHR------------LKRTVS 143
           KV+ PPK +WKQMGHE  TV VH+EMKRVQ+LPSNS YATHR            ++RT S
Sbjct: 4   KVSAPPKNNWKQMGHEETTVTVHQEMKRVQQLPSNSAYATHRFRVLNKILQLLSIQRTAS 63

Query: 144 QEEELELLFAGLSL 146
           QEEELELLFAGLSL
Sbjct: 64  QEEELELLFAGLSL 77

[Close]
BLAST of Clc11G19840 vs. ExPASy TrEMBL
Match: A0A6J1IHD5 (uncharacterized protein LOC111476958 OS=Cucurbita maxima OX=3661 GN=LOC111476958 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.4e-14
Identity = 49/74 (66.22%), Postives = 54/74 (72.97%), Query Frame = 0 

Query: 84  KVTVPPKRDWKQMGHEGATVAVHEEMKRVQRLPSNSTYATHRLK------------RTVS 143
           KV+V PK + KQMGH+ A V V EEMKRVQ+LPSNSTYATHRL+            RT S
Sbjct: 4   KVSVSPKNNGKQMGHQEAKVVVQEEMKRVQQLPSNSTYATHRLRVLNKILQLLSIQRTAS 63

Query: 144 QEEELELLFAGLSL 146
           QEEELELLFAGLSL
Sbjct: 64  QEEELELLFAGLSL 77

[Close]
BLAST of Clc11G19840 vs. ExPASy TrEMBL
Match: A0A6J1F6C2 (uncharacterized protein LOC111442587 OS=Cucurbita moschata OX=3662 GN=LOC111442587 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.4e-14
Identity = 49/74 (66.22%), Postives = 54/74 (72.97%), Query Frame = 0 

Query: 84  KVTVPPKRDWKQMGHEGATVAVHEEMKRVQRLPSNSTYATHRLK------------RTVS 143
           KV+V PK + KQMGH+ A V V EEMKRVQ+LPSNSTYATHRL+            RT S
Sbjct: 4   KVSVSPKNNGKQMGHQEAKVVVQEEMKRVQQLPSNSTYATHRLRVLNKILQLLSIQRTAS 63

Query: 144 QEEELELLFAGLSL 146
           QEEELELLFAGLSL
Sbjct: 64  QEEELELLFAGLSL 77

[Close]
BLAST of Clc11G19840 vs. TAIR 10
Match: AT3G13677.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 24 Blast hits to 24 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 56.6 bits (135), Expect = 1.9e-08
Identity = 32/65 (49.23%), Postives = 40/65 (61.54%), Query Frame = 0 

Query: 93  WKQMGHEGATVAVHEEMKRVQRLPSNSTYATHRLK------------RTVSQEEELELLF 146
           W +M  +  +  + EE+KRV +LPSNS YA HRLK            RT+SQE+ELELLF
Sbjct: 12  WNEMDCDEKSSVIQEEIKRVCKLPSNSVYAVHRLKVLNKINDLLSVQRTLSQEKELELLF 71

[Close]
BLAST of Clc11G19840 vs. TAIR 10
Match: AT3G13677.1 (unknown protein; Has 24 Blast hits to 24 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 8.3e-04
Identity = 18/35 (51.43%), Postives = 24/35 (68.57%), Query Frame = 0 

Query: 93  WKQMGHEGATVAVHEEMKRVQRLPSNSTYATHRLK 128
           W +M  +  +  + EE+KRV +LPSNS YA HRLK
Sbjct: 12  WNEMDCDEKSSVIQEEIKRVCKLPSNSVYAVHRLK 46

The following BLAST results are available for this feature:
BLAST of Clc11G19840 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0036794.12.7e-2077.03uncharacterized protein E6C27_scaffold20G00830 [Cucumis melo var. makuwa] >TYJ95... [more]
XP_004150100.12.9e-1974.32uncharacterized protein LOC101214758 [Cucumis sativus] >XP_004150101.1 uncharact... [more]
XP_038898294.16.1e-1772.97uncharacterized protein LOC120085994 [Benincasa hispida] >XP_038898295.1 unchara... [more]
XP_022139403.13.0e-1666.22uncharacterized protein LOC111010342 [Momordica charantia] >XP_022139404.1 uncha... [more]
KAG6591989.13.7e-1466.22hypothetical protein SDJN03_14335, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Clc11G19840 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc11G19840 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SZV01.3e-2077.03Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LFX01.4e-1974.32Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851790 PE=4 SV=1[more]
A0A6J1CCW11.5e-1666.22uncharacterized protein LOC111010342 OS=Momordica charantia OX=3673 GN=LOC111010... [more]
A0A6J1IHD52.4e-1466.22uncharacterized protein LOC111476958 OS=Cucurbita maxima OX=3661 GN=LOC111476958... [more]
A0A6J1F6C22.4e-1466.22uncharacterized protein LOC111442587 OS=Cucurbita moschata OX=3662 GN=LOC1114425... [more]
BLAST of Clc11G19840 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G13677.21.9e-0849.23unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G13677.18.3e-0451.43unknown protein; Has 24 Blast hits to 24 proteins in 11 species: Archae - 0; Bac... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc11G19840.2Clc11G19840.2mRNA