Clc11G19470 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G19470
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	RING-type domain-containing protein
Location	ClcChr11: 29935496 .. 29935969 (-)
RNA-Seq Expression	Clc11G19470
Synteny	Clc11G19470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGATCCATTACTGACACTCCTCTTCCCCATGGAAACCATGGTCCCTGAATCTCCATCTCCCCCAGTCGTCCACTACACCGTAACCCTCGATCTTCGAACCTCCATTATCTTCTCCTTCTCCATAATCCTCTTCTTCCTCTTCCTCTTCCACGTCCTCAGCGGCTTCCTCCAGTGGTTCCTCGACGTCCGGCGCAGCGGAGAAGGCGCCGGAGACGTGGAGGCGGGAATGGGGGAGGAGCGGCGGTTGAGGCGGCCGGAGAAACTGCCGCCGACGGTGAGGTTTGGGAGCGAGAAAATGGTGAGGAGGAGGAGCGAGGAGGAATGTGCGATATGTTTGGAGGAGTTTTTGGCCGGAGAAAACTGCCAGGCGTTGCCGGAGTGTAACCATTTTTTTCATTCCGATTGTATTGATGTTTGGTTTAGCAAGAAATTTACGTGCCCAATCTGTCGTAATTGTGTTGCAGCTTAG

mRNA sequence

ATGGCAGATCCATTACTGACACTCCTCTTCCCCATGGAAACCATGGTCCCTGAATCTCCATCTCCCCCAGTCGTCCACTACACCGTAACCCTCGATCTTCGAACCTCCATTATCTTCTCCTTCTCCATAATCCTCTTCTTCCTCTTCCTCTTCCACGTCCTCAGCGGCTTCCTCCAGTGGTTCCTCGACGTCCGGCGCAGCGGAGAAGGCGCCGGAGACGTGGAGGCGGGAATGGGGGAGGAGCGGCGGTTGAGGCGGCCGGAGAAACTGCCGCCGACGGTGAGGTTTGGGAGCGAGAAAATGGTGAGGAGGAGGAGCGAGGAGGAATGTGCGATATGTTTGGAGGAGTTTTTGGCCGGAGAAAACTGCCAGGCGTTGCCGGAGTGTAACCATTTTTTTCATTCCGATTGTATTGATGTTTGGTTTAGCAAGAAATTTACGTGCCCAATCTGTCGTAATTGTGTTGCAGCTTAG

Coding sequence (CDS)

ATGGCAGATCCATTACTGACACTCCTCTTCCCCATGGAAACCATGGTCCCTGAATCTCCATCTCCCCCAGTCGTCCACTACACCGTAACCCTCGATCTTCGAACCTCCATTATCTTCTCCTTCTCCATAATCCTCTTCTTCCTCTTCCTCTTCCACGTCCTCAGCGGCTTCCTCCAGTGGTTCCTCGACGTCCGGCGCAGCGGAGAAGGCGCCGGAGACGTGGAGGCGGGAATGGGGGAGGAGCGGCGGTTGAGGCGGCCGGAGAAACTGCCGCCGACGGTGAGGTTTGGGAGCGAGAAAATGGTGAGGAGGAGGAGCGAGGAGGAATGTGCGATATGTTTGGAGGAGTTTTTGGCCGGAGAAAACTGCCAGGCGTTGCCGGAGTGTAACCATTTTTTTCATTCCGATTGTATTGATGTTTGGTTTAGCAAGAAATTTACGTGCCCAATCTGTCGTAATTGTGTTGCAGCTTAG

Protein sequence

MADPLLTLLFPMETMVPESPSPPVVHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRSGEGAGDVEAGMGEERRLRRPEKLPPTVRFGSEKMVRRRSEEECAICLEEFLAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVAA

Homology

[Close]

BLAST of Clc11G19470 vs. NCBI nr
Match: XP_031740449.1 (RING-H2 finger protein ATL39-like [Cucumis sativus])

HSP 1 Score: 290.4 bits (742), Expect = 9.1e-75
Identity = 144/159 (90.57%), Postives = 149/159 (93.71%), Query Frame = 0


Query: 1   MADPLLTLLFPMETMVPESPSPPVVHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW 60
           M DPLLTLLFPMETMVPESPSPPV+HYTVTLD+RTSIIFSFSIILFFLFLFHVLSGFLQW
Sbjct: 1   MGDPLLTLLFPMETMVPESPSPPVLHYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQW 60

Query: 61  FLDVRRSGEGAGDVEAGMGEERRLRRPEK--LPPTVRFGSEKMVRRRSEEECAICLEEFL 120
           FLDVRR+G G  DVEA M EERRL+R EK  LPPTVRFGSEKMVRRRSEEECAICLEEFL
Sbjct: 61  FLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEFL 120

Query: 121 AGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVAA 158
            GENCQALPECNHFFHS+CIDVWFSKKFTCPICRNCVAA
Sbjct: 121 IGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA 159

[Close]

BLAST of Clc11G19470 vs. NCBI nr
Match: KAA0064334.1 (RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa])

HSP 1 Score: 285.0 bits (728), Expect = 3.8e-73
Identity = 142/159 (89.31%), Postives = 149/159 (93.71%), Query Frame = 0


Query: 1   MADPLLTLLFPMETMVPESPSPPVVHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW 60
           M DPLLTLLFPMETMVPES SPPV+HYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW
Sbjct: 40  MGDPLLTLLFPMETMVPESSSPPVLHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW 99

Query: 61  FLDVRRSGEGAGDVEAGMGEERRLRRPEK--LPPTVRFGSEKMVRRRSEEECAICLEEFL 120
           FLDVRRSG G  DVEA M EERR++R EK  LPPTV+FGSEKMVRRRSEEECAICLEEFL
Sbjct: 100 FLDVRRSGGGDEDVEAAMAEERRMKRAEKLPLPPTVKFGSEKMVRRRSEEECAICLEEFL 159

Query: 121 AGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVAA 158
           AGENCQALPEC+HFFHS+CI+VWFSKKFTCPICRNCVAA
Sbjct: 160 AGENCQALPECSHFFHSECIEVWFSKKFTCPICRNCVAA 198

[Close]

BLAST of Clc11G19470 vs. NCBI nr
Match: XP_008453063.1 (PREDICTED: RING-H2 finger protein ATL39-like [Cucumis melo] >TYK20253.1 RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa])

HSP 1 Score: 285.0 bits (728), Expect = 3.8e-73
Identity = 142/159 (89.31%), Postives = 149/159 (93.71%), Query Frame = 0


Query: 1   MADPLLTLLFPMETMVPESPSPPVVHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW 60
           M DPLLTLLFPMETMVPES SPPV+HYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW
Sbjct: 1   MGDPLLTLLFPMETMVPESSSPPVLHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW 60

Query: 61  FLDVRRSGEGAGDVEAGMGEERRLRRPEK--LPPTVRFGSEKMVRRRSEEECAICLEEFL 120
           FLDVRRSG G  DVEA M EERR++R EK  LPPTV+FGSEKMVRRRSEEECAICLEEFL
Sbjct: 61  FLDVRRSGGGDEDVEAAMAEERRMKRAEKLPLPPTVKFGSEKMVRRRSEEECAICLEEFL 120

Query: 121 AGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVAA 158
           AGENCQALPEC+HFFHS+CI+VWFSKKFTCPICRNCVAA
Sbjct: 121 AGENCQALPECSHFFHSECIEVWFSKKFTCPICRNCVAA 159

[Close]

BLAST of Clc11G19470 vs. NCBI nr
Match: XP_022976597.1 (RING-H2 finger protein ATL39-like [Cucurbita maxima])

HSP 1 Score: 269.2 bits (687), Expect = 2.2e-68
Identity = 136/158 (86.08%), Postives = 144/158 (91.14%), Query Frame = 0


Query: 1   MADPLLTLLFPMETMVPESPSPPV-VHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQ 60
           MADPLLTLLFPMETMV ES SPPV VHYTVTLDLRTSIIFS +IILFFLFL+HVLSGFLQ
Sbjct: 1   MADPLLTLLFPMETMVSESASPPVIVHYTVTLDLRTSIIFSVTIILFFLFLYHVLSGFLQ 60

Query: 61  WFLDVRRSGEGAGDVEAGMGEERRLRRPEKLPPTVRFGSEKMVRRRSEEECAICLEEFLA 120
           WFL    SG   GDVEAGMGEERR+RR EK+P  VRFGSE+MVRRRSEEECAICLEEF+A
Sbjct: 61  WFL----SGRRGGDVEAGMGEERRVRRAEKMPAAVRFGSERMVRRRSEEECAICLEEFMA 120

Query: 121 GENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVAA 158
           GENCQALPECNHFFHSDCIDVWFSKKFTCPICR+C+AA
Sbjct: 121 GENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA 154

[Close]

BLAST of Clc11G19470 vs. NCBI nr
Match: XP_022936829.1 (RING-H2 finger protein ATL39-like [Cucurbita moschata])

HSP 1 Score: 268.1 bits (684), Expect = 4.9e-68
Identity = 135/158 (85.44%), Postives = 144/158 (91.14%), Query Frame = 0


Query: 1   MADPLLTLLFPMETMVPESPSPP-VVHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQ 60
           MADPLLTLLFPMETMV ES SPP VVHYTVTLDLRTS+IFS +IILFFLFL+HVLSGFLQ
Sbjct: 1   MADPLLTLLFPMETMVSESASPPVVVHYTVTLDLRTSMIFSVTIILFFLFLYHVLSGFLQ 60

Query: 61  WFLDVRRSGEGAGDVEAGMGEERRLRRPEKLPPTVRFGSEKMVRRRSEEECAICLEEFLA 120
           WFL    SG   GDVEAGMGEERR+RR EK+P  VRFGSE+MVRRRSEEECAICLEEF+A
Sbjct: 61  WFL----SGRRGGDVEAGMGEERRVRRAEKMPAAVRFGSERMVRRRSEEECAICLEEFMA 120

Query: 121 GENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVAA 158
           GENCQALPECNHFFHSDCIDVWFSKKFTCPICR+C+AA
Sbjct: 121 GENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA 154

[Close]

BLAST of Clc11G19470 vs. ExPASy Swiss-Prot
Match: P0C034 (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.9e-12
Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 107 EEECAICLEEFLAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCV 156
           +EEC ICL +F++GE  + LP+CNH FH  CID W  +  TCP CRNC+
Sbjct: 132 DEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCRNCL 180

[Close]

BLAST of Clc11G19470 vs. ExPASy Swiss-Prot
Match: P0C035 (RING-H2 finger protein ATL60 OS=Arabidopsis thaliana OX=3702 GN=ATL60 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.1e-12
Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 109 ECAICLEEFLAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVAA 158
           ECA+CL + + G+  + LP CNH FH DCID+WF    TCP+CRN V +
Sbjct: 119 ECAVCLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPLCRNTVGS 167

[Close]

BLAST of Clc11G19470 vs. ExPASy Swiss-Prot
Match: Q9XF63 (RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.7e-12
Identity = 27/47 (57.45%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 109 ECAICLEEFLAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCV 156
           EC+ICL E + G+  + LP+CNH FH +CID+WF    TCPICRN V
Sbjct: 126 ECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTV 172

[Close]

BLAST of Clc11G19470 vs. ExPASy Swiss-Prot
Match: Q9LS99 (RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.7e-12
Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 108 EECAICLEEFLAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCV 156
           EEC ICL +F+AGE  + LP+CNH FH  CID W ++  TCP CR+C+
Sbjct: 128 EECVICLSDFVAGEQLRVLPKCNHGFHLRCIDKWLTQHMTCPKCRHCL 175

[Close]

BLAST of Clc11G19470 vs. ExPASy Swiss-Prot
Match: Q9LRB7 (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.5e-11
Identity = 39/95 (41.05%), Postives = 49/95 (51.58%), Query Frame = 0


Query: 65  RRSGEGAGDVEAGMGEERRLRRPEKLPPTVRFGSEKMVRRRSEE-------ECAICLEEF 124
           RRSG G GD   G G +  + R   LP TV   S      + EE       ECA+CL E 
Sbjct: 85  RRSGSG-GDGGTGGGVDPEVLR--SLPVTVYSRSTAAAAAKEEEEEDDDGVECAVCLAEL 144

Query: 125 LAGENCQALPECNHFFHSDCIDVWFSKKFTCPICR 153
             GE  + LP C H FH++C+D+W     TCP+CR
Sbjct: 145 EDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 176

[Close]

BLAST of Clc11G19470 vs. ExPASy TrEMBL
Match: A0A0A0L062 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G637730 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 4.4e-75
Identity = 144/159 (90.57%), Postives = 149/159 (93.71%), Query Frame = 0


Query: 1   MADPLLTLLFPMETMVPESPSPPVVHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW 60
           M DPLLTLLFPMETMVPESPSPPV+HYTVTLD+RTSIIFSFSIILFFLFLFHVLSGFLQW
Sbjct: 1   MGDPLLTLLFPMETMVPESPSPPVLHYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQW 60

Query: 61  FLDVRRSGEGAGDVEAGMGEERRLRRPEK--LPPTVRFGSEKMVRRRSEEECAICLEEFL 120
           FLDVRR+G G  DVEA M EERRL+R EK  LPPTVRFGSEKMVRRRSEEECAICLEEFL
Sbjct: 61  FLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEFL 120

Query: 121 AGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVAA 158
            GENCQALPECNHFFHS+CIDVWFSKKFTCPICRNCVAA
Sbjct: 121 IGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA 159

[Close]

BLAST of Clc11G19470 vs. ExPASy TrEMBL
Match: A0A5A7VAT0 (RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G00330 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.9e-73
Identity = 142/159 (89.31%), Postives = 149/159 (93.71%), Query Frame = 0


Query: 1   MADPLLTLLFPMETMVPESPSPPVVHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW 60
           M DPLLTLLFPMETMVPES SPPV+HYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW
Sbjct: 40  MGDPLLTLLFPMETMVPESSSPPVLHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW 99

Query: 61  FLDVRRSGEGAGDVEAGMGEERRLRRPEK--LPPTVRFGSEKMVRRRSEEECAICLEEFL 120
           FLDVRRSG G  DVEA M EERR++R EK  LPPTV+FGSEKMVRRRSEEECAICLEEFL
Sbjct: 100 FLDVRRSGGGDEDVEAAMAEERRMKRAEKLPLPPTVKFGSEKMVRRRSEEECAICLEEFL 159

Query: 121 AGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVAA 158
           AGENCQALPEC+HFFHS+CI+VWFSKKFTCPICRNCVAA
Sbjct: 160 AGENCQALPECSHFFHSECIEVWFSKKFTCPICRNCVAA 198

[Close]

BLAST of Clc11G19470 vs. ExPASy TrEMBL
Match: A0A5D3D9M0 (RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003920 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.9e-73
Identity = 142/159 (89.31%), Postives = 149/159 (93.71%), Query Frame = 0


Query: 1   MADPLLTLLFPMETMVPESPSPPVVHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW 60
           M DPLLTLLFPMETMVPES SPPV+HYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW
Sbjct: 1   MGDPLLTLLFPMETMVPESSSPPVLHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW 60

Query: 61  FLDVRRSGEGAGDVEAGMGEERRLRRPEK--LPPTVRFGSEKMVRRRSEEECAICLEEFL 120
           FLDVRRSG G  DVEA M EERR++R EK  LPPTV+FGSEKMVRRRSEEECAICLEEFL
Sbjct: 61  FLDVRRSGGGDEDVEAAMAEERRMKRAEKLPLPPTVKFGSEKMVRRRSEEECAICLEEFL 120

Query: 121 AGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVAA 158
           AGENCQALPEC+HFFHS+CI+VWFSKKFTCPICRNCVAA
Sbjct: 121 AGENCQALPECSHFFHSECIEVWFSKKFTCPICRNCVAA 159

[Close]

BLAST of Clc11G19470 vs. ExPASy TrEMBL
Match: A0A1S3BVC7 (RING-H2 finger protein ATL39-like OS=Cucumis melo OX=3656 GN=LOC103493886 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.9e-73
Identity = 142/159 (89.31%), Postives = 149/159 (93.71%), Query Frame = 0


Query: 1   MADPLLTLLFPMETMVPESPSPPVVHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW 60
           M DPLLTLLFPMETMVPES SPPV+HYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW
Sbjct: 1   MGDPLLTLLFPMETMVPESSSPPVLHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW 60

Query: 61  FLDVRRSGEGAGDVEAGMGEERRLRRPEK--LPPTVRFGSEKMVRRRSEEECAICLEEFL 120
           FLDVRRSG G  DVEA M EERR++R EK  LPPTV+FGSEKMVRRRSEEECAICLEEFL
Sbjct: 61  FLDVRRSGGGDEDVEAAMAEERRMKRAEKLPLPPTVKFGSEKMVRRRSEEECAICLEEFL 120

Query: 121 AGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVAA 158
           AGENCQALPEC+HFFHS+CI+VWFSKKFTCPICRNCVAA
Sbjct: 121 AGENCQALPECSHFFHSECIEVWFSKKFTCPICRNCVAA 159

[Close]

BLAST of Clc11G19470 vs. ExPASy TrEMBL
Match: A0A6J1IG67 (RING-H2 finger protein ATL39-like OS=Cucurbita maxima OX=3661 GN=LOC111476945 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 1.1e-68
Identity = 136/158 (86.08%), Postives = 144/158 (91.14%), Query Frame = 0


Query: 1   MADPLLTLLFPMETMVPESPSPPV-VHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQ 60
           MADPLLTLLFPMETMV ES SPPV VHYTVTLDLRTSIIFS +IILFFLFL+HVLSGFLQ
Sbjct: 1   MADPLLTLLFPMETMVSESASPPVIVHYTVTLDLRTSIIFSVTIILFFLFLYHVLSGFLQ 60

Query: 61  WFLDVRRSGEGAGDVEAGMGEERRLRRPEKLPPTVRFGSEKMVRRRSEEECAICLEEFLA 120
           WFL    SG   GDVEAGMGEERR+RR EK+P  VRFGSE+MVRRRSEEECAICLEEF+A
Sbjct: 61  WFL----SGRRGGDVEAGMGEERRVRRAEKMPAAVRFGSERMVRRRSEEECAICLEEFMA 120

Query: 121 GENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVAA 158
           GENCQALPECNHFFHSDCIDVWFSKKFTCPICR+C+AA
Sbjct: 121 GENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA 154

[Close]

BLAST of Clc11G19470 vs. TAIR 10
Match: AT1G49220.1 (RING/U-box superfamily protein )

HSP 1 Score: 72.8 bits (177), Expect = 2.8e-13
Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 107 EEECAICLEEFLAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCV 156
           +EEC ICL +F++GE  + LP+CNH FH  CID W  +  TCP CRNC+
Sbjct: 132 DEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCRNCL 180

[Close]

BLAST of Clc11G19470 vs. TAIR 10
Match: AT1G53820.1 (RING/U-box superfamily protein )

HSP 1 Score: 72.4 bits (176), Expect = 3.6e-13
Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 109 ECAICLEEFLAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVAA 158
           ECA+CL + + G+  + LP CNH FH DCID+WF    TCP+CRN V +
Sbjct: 119 ECAVCLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPLCRNTVGS 167

[Close]

BLAST of Clc11G19470 vs. TAIR 10
Match: AT1G72310.1 (RING/U-box superfamily protein )

HSP 1 Score: 72.0 bits (175), Expect = 4.8e-13
Identity = 27/47 (57.45%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 109 ECAICLEEFLAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCV 156
           EC+ICL E + G+  + LP+CNH FH +CID+WF    TCPICRN V
Sbjct: 126 ECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTV 172

[Close]

BLAST of Clc11G19470 vs. TAIR 10
Match: AT3G18773.1 (RING/U-box superfamily protein )

HSP 1 Score: 72.0 bits (175), Expect = 4.8e-13
Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 108 EECAICLEEFLAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCV 156
           EEC ICL +F+AGE  + LP+CNH FH  CID W ++  TCP CR+C+
Sbjct: 128 EECVICLSDFVAGEQLRVLPKCNHGFHLRCIDKWLTQHMTCPKCRHCL 175

[Close]

BLAST of Clc11G19470 vs. TAIR 10
Match: AT1G49210.1 (RING/U-box superfamily protein )

HSP 1 Score: 69.3 bits (168), Expect = 3.1e-12
Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 108 EECAICLEEFLAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCV 156
           EEC ICL +F++GE  + LP+CNH FH  CID W     TCP CR+C+
Sbjct: 133 EECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQHHLTCPKCRHCL 180

The following BLAST results are available for this feature:

BLAST of Clc11G19470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031740449.1	9.1e-75	90.57	RING-H2 finger protein ATL39-like [Cucumis sativus]	[more]
KAA0064334.1	3.8e-73	89.31	RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa]	[more]
XP_008453063.1	3.8e-73	89.31	PREDICTED: RING-H2 finger protein ATL39-like [Cucumis melo] >TYK20253.1 RING-H2 ...	[more]
XP_022976597.1	2.2e-68	86.08	RING-H2 finger protein ATL39-like [Cucurbita maxima]	[more]
XP_022936829.1	4.9e-68	85.44	RING-H2 finger protein ATL39-like [Cucurbita moschata]	[more]

BLAST of Clc11G19470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C034	3.9e-12	55.10	RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1	[more]
P0C035	5.1e-12	53.06	RING-H2 finger protein ATL60 OS=Arabidopsis thaliana OX=3702 GN=ATL60 PE=2 SV=1	[more]
Q9XF63	6.7e-12	57.45	RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1	[more]
Q9LS99	6.7e-12	56.25	RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1	[more]
Q9LRB7	1.5e-11	41.05	E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5....	[more]

BLAST of Clc11G19470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L062	4.4e-75	90.57	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G637730 P...	[more]
A0A5A7VAT0	1.9e-73	89.31	RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3D9M0	1.9e-73	89.31	RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BVC7	1.9e-73	89.31	RING-H2 finger protein ATL39-like OS=Cucumis melo OX=3656 GN=LOC103493886 PE=4 S...	[more]
A0A6J1IG67	1.1e-68	86.08	RING-H2 finger protein ATL39-like OS=Cucurbita maxima OX=3661 GN=LOC111476945 PE...	[more]

BLAST of Clc11G19470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49220.1	2.8e-13	55.10	RING/U-box superfamily protein	[more]
AT1G53820.1	3.6e-13	53.06	RING/U-box superfamily protein	[more]
AT1G72310.1	4.8e-13	57.45	RING/U-box superfamily protein	[more]
AT3G18773.1	4.8e-13	56.25	RING/U-box superfamily protein	[more]
AT1G49210.1	3.1e-12	54.17	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 110..151 e-value: 5.0E-7 score: 39.4
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 109..152 e-value: 2.8E-13 score: 50.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 110..152 score: 12.459772
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 88..157 e-value: 5.8E-19 score: 69.1
None	No IPR available	PANTHER	PTHR14155:SF493	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 22..80
None	No IPR available	PANTHER	PTHR14155:SF493	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 81..155
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 22..80
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 81..155
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 109..152 e-value: 4.24225E-16 score: 65.7861
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 105..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G19470.1	Clc11G19470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane