Clc11G19460 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G19460
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr11: 29933172 .. 29933899 (+)
RNA-Seq Expression	Clc11G19460
Synteny	Clc11G19460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGGTTTGTTCCAACAACTTTCTAGAACTGTTTCCAAAAACCCTAAACCCTCTTCTCTAGCCGCGCTATAAATACCCATTCCTCATTTCATTTCTTCCCCTCCAATTTCTCCTCTCTACATATCTCCCTCCATTCTTCAGACTCCCGCAATGGCTTCCAGGTTGATTCTCAAGGACGCCAAATTAGCACTCCGATTCCTTATTCTTCGCAATCCAGCCTCATCCGCTCCCTCAGCACAAACCATCCAGAATCTTCTTCTTCCAATACTTCCAAGGCAATCTGCATCTGGATTACTCGGTGGCGTTTGTTCGAGCGACCGGCCGCTACTGTCTAGGGATTTAAATTCTAGTTTTGATGGCGGACTTAGGATCGAGGTTAGAGGGAAGCGGGAGCCGGAGATTGAGGAGACAGATGAGTTCGGCGAGAACGAAAGCGAGAGCGATCTCGAGTTCTCCGATGACTTCAGTGGGGACGAATTTTCTGACAACGACGATGCAGAGCCTGAGGATGATGATAATTGATTGATCGATATGTCTACATATACTGCTGTTTGAATTTCAATTTTGGATTCATATCGTGTTGATAATTGATGATTTGGTTTCGATATATCCGTAGAATTGAAAGTGCTCGAGTGTTGACATCGATAAATCTGTGTTTTGATACCATTTTGGTCATGGATATTCATTTTTTTTAAGAAATTTTTAGTTCATTCCACTTTTGTTTAGTCC

mRNA sequence

CTGGTTTGTTCCAACAACTTTCTAGAACTGTTTCCAAAAACCCTAAACCCTCTTCTCTAGCCGCGCTATAAATACCCATTCCTCATTTCATTTCTTCCCCTCCAATTTCTCCTCTCTACATATCTCCCTCCATTCTTCAGACTCCCGCAATGGCTTCCAGGTTGATTCTCAAGGACGCCAAATTAGCACTCCGATTCCTTATTCTTCGCAATCCAGCCTCATCCGCTCCCTCAGCACAAACCATCCAGAATCTTCTTCTTCCAATACTTCCAAGGCAATCTGCATCTGGATTACTCGGTGGCGTTTGTTCGAGCGACCGGCCGCTACTGTCTAGGGATTTAAATTCTAGTTTTGATGGCGGACTTAGGATCGAGGTTAGAGGGAAGCGGGAGCCGGAGATTGAGGAGACAGATGAGTTCGGCGAGAACGAAAGCGAGAGCGATCTCGAGTTCTCCGATGACTTCAGTGGGGACGAATTTTCTGACAACGACGATGCAGAGCCTGAGGATGATGATAATTGATTGATCGATATGTCTACATATACTGCTGTTTGAATTTCAATTTTGGATTCATATCGTGTTGATAATTGATGATTTGGTTTCGATATATCCGTAGAATTGAAAGTGCTCGAGTGTTGACATCGATAAATCTGTGTTTTGATACCATTTTGGTCATGGATATTCATTTTTTTTAAGAAATTTTTAGTTCATTCCACTTTTGTTTAGTCC

Coding sequence (CDS)

ATGGCTTCCAGGTTGATTCTCAAGGACGCCAAATTAGCACTCCGATTCCTTATTCTTCGCAATCCAGCCTCATCCGCTCCCTCAGCACAAACCATCCAGAATCTTCTTCTTCCAATACTTCCAAGGCAATCTGCATCTGGATTACTCGGTGGCGTTTGTTCGAGCGACCGGCCGCTACTGTCTAGGGATTTAAATTCTAGTTTTGATGGCGGACTTAGGATCGAGGTTAGAGGGAAGCGGGAGCCGGAGATTGAGGAGACAGATGAGTTCGGCGAGAACGAAAGCGAGAGCGATCTCGAGTTCTCCGATGACTTCAGTGGGGACGAATTTTCTGACAACGACGATGCAGAGCCTGAGGATGATGATAATTGA

Protein sequence

MASRLILKDAKLALRFLILRNPASSAPSAQTIQNLLLPILPRQSASGLLGGVCSSDRPLLSRDLNSSFDGGLRIEVRGKREPEIEETDEFGENESESDLEFSDDFSGDEFSDNDDAEPEDDDN

Homology

[Close]

BLAST of Clc11G19460 vs. NCBI nr
Match: XP_022976605.1 (uncharacterized protein LOC111476951 [Cucurbita maxima])

HSP 1 Score: 121.7 bits (304), Expect = 4.4e-24
Identity = 82/130 (63.08%), Postives = 96/130 (73.85%), Query Frame = 0


Query: 1   MASRLILKDAKLALRFLILRNPASSAPSAQTIQNLLLPILPRQSASGLLGGVCSSDRPLL 60
           MASR ILKD K  + +L+LRNPASS P AQ+IQN LLP  PRQSASG L  +  SDRPLL
Sbjct: 1   MASRSILKDVKAPI-YLLLRNPASSVPLAQSIQNHLLP-FPRQSASGFLRELGLSDRPLL 60

Query: 61  SRDLNSSFDGGLRIEVRGKREPEIEETDEFGENESESDLEFSDDFSG--------DEFSD 120
            R  NSSFDGG RIEVRGK++P IE+ DE  ++ESESDLE SD F+G        D+FSD
Sbjct: 61  PRHFNSSFDGGFRIEVRGKQQPVIEDIDE--QSESESDLEGSDGFNGEGWEELSADDFSD 120

Query: 121 NDDAEPEDDD 123
           +DDAEP DD+
Sbjct: 121 DDDAEPRDDE 126

[Close]

BLAST of Clc11G19460 vs. NCBI nr
Match: KAG6591964.1 (hypothetical protein SDJN03_14310, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 114.0 bits (284), Expect = 9.2e-22
Identity = 80/130 (61.54%), Postives = 91/130 (70.00%), Query Frame = 0


Query: 1   MASRLILKDAKLALRFLILRNPASSAPSAQTIQNLLLPILPRQSASGLLGGVCSSDRPLL 60
           MASR ILKD K  + FL LRNPASS P AQ+I N LLP  P QSASG L  +  SDRPLL
Sbjct: 1   MASRSILKDVKAPIYFL-LRNPASSVPLAQSIHNHLLP-FPTQSASGFLRELGLSDRPLL 60

Query: 61  SRDLNSSFDGGLRIEVRGKREPEIEETDEFGENESESDLEFSD--------DFSGDEFSD 120
            R  NSSFDGG RIEVRGK++P IE+ DE G  ES+SD E SD        +FSG +FSD
Sbjct: 61  PRHFNSSFDGGFRIEVRGKQQPVIEDIDEQG--ESDSDFEGSDGCDGEGWEEFSGGDFSD 120

Query: 121 NDDAEPEDDD 123
           +DDAEP DD+
Sbjct: 121 DDDAEPGDDE 126

[Close]

BLAST of Clc11G19460 vs. NCBI nr
Match: XP_022936831.1 (uncharacterized protein LOC111443300 [Cucurbita moschata])

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-20
Identity = 79/130 (60.77%), Postives = 92/130 (70.77%), Query Frame = 0


Query: 1   MASRLILKDAKLALRFLILRNPASSAPSAQTIQNLLLPILPRQSASGLLGGVCSSDRPLL 60
           MASR ILKD K  + FL LRNPASS P AQ+I N LLP  P QSASG L  +  SDRPLL
Sbjct: 1   MASRSILKDVKAPIYFL-LRNPASSVPLAQSIHNHLLP-FPTQSASGFLRELGLSDRPLL 60

Query: 61  SRDLNSSFDGGLRIEVRGKREPEIEETDEFGENESESDLEFSD--------DFSGDEFS- 120
            R  NSSFDGG RIEVRGK++P IE+ DE  +++S+SD E SD        +FSGD+FS 
Sbjct: 61  PRHFNSSFDGGFRIEVRGKQQPVIEDIDE--QSDSDSDFEGSDGWDGEGCEEFSGDDFSD 120

Query: 121 DNDDAEPEDD 122
           D+DDAEP DD
Sbjct: 121 DDDDAEPGDD 126

[Close]

BLAST of Clc11G19460 vs. NCBI nr
Match: KAA0064333.1 (hypothetical protein E6C27_scaffold255G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 105.9 bits (263), Expect = 2.5e-19
Identity = 76/125 (60.80%), Postives = 86/125 (68.80%), Query Frame = 0


Query: 1   MASRLILKDAKLALRFLILRNPASSAPSAQTIQNLLLPILPRQSASGLLGGVCSSDRPLL 60
           MASRLILKD K  LRFL LRNPASSAPSAQ IQNLLLPI PRQ  SG LG VC+  RP L
Sbjct: 62  MASRLILKDIKTPLRFL-LRNPASSAPSAQAIQNLLLPI-PRQYPSGFLGQVCTGGRPQL 121

Query: 61  SRDLNSSFDGGLRIEVRGKREPEIEETDEFGENESESDLEFSDDFSG--DEFSDNDDAEP 120
           S   NSS DGG RIEVRGK+E    + D   E +S+ + E  D F    D+F D D+ EP
Sbjct: 122 SGVFNSSVDGGFRIEVRGKQELANYDDDNM-EIDSDFEKECPDGFDSDDDDFFDTDEMEP 181

Query: 121 EDDDN 124
           +DDD+
Sbjct: 182 QDDDD 183

[Close]

BLAST of Clc11G19460 vs. NCBI nr
Match: KAE8649846.1 (hypothetical protein Csa_012085 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 1.2e-18
Identity = 75/123 (60.98%), Postives = 90/123 (73.17%), Query Frame = 0


Query: 1   MASRLILKDAKLALRFLILRNPASSAPSAQTIQNLLLPILPRQSASGLLGGVCSSDRPLL 60
           MASRLILKD K  LRFL LRNPASSAPSAQ IQNLLLPI PRQS   +L  VC+ DRP L
Sbjct: 1   MASRLILKDIKAPLRFL-LRNPASSAPSAQAIQNLLLPI-PRQSPPVVLPQVCTRDRPQL 60

Query: 61  SRDLNSSFDGGLRIEVRGKREPEIEETDEFGENESESDLEFSDDFSGDEFSDNDDAEPED 120
           S  LNS  DGG RIEVRG+++  + + D+  E +S+S+ EFSD+   DE  D +D EP+D
Sbjct: 61  SGVLNSIVDGGFRIEVRGQQK-LMHDDDDNMEVDSDSETEFSDE--DDECYDTEDMEPQD 118

Query: 121 DDN 124
           DD+
Sbjct: 121 DDD 118

[Close]

BLAST of Clc11G19460 vs. ExPASy TrEMBL
Match: A0A6J1IJY0 (uncharacterized protein LOC111476951 OS=Cucurbita maxima OX=3661 GN=LOC111476951 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.1e-24
Identity = 82/130 (63.08%), Postives = 96/130 (73.85%), Query Frame = 0


Query: 1   MASRLILKDAKLALRFLILRNPASSAPSAQTIQNLLLPILPRQSASGLLGGVCSSDRPLL 60
           MASR ILKD K  + +L+LRNPASS P AQ+IQN LLP  PRQSASG L  +  SDRPLL
Sbjct: 1   MASRSILKDVKAPI-YLLLRNPASSVPLAQSIQNHLLP-FPRQSASGFLRELGLSDRPLL 60

Query: 61  SRDLNSSFDGGLRIEVRGKREPEIEETDEFGENESESDLEFSDDFSG--------DEFSD 120
            R  NSSFDGG RIEVRGK++P IE+ DE  ++ESESDLE SD F+G        D+FSD
Sbjct: 61  PRHFNSSFDGGFRIEVRGKQQPVIEDIDE--QSESESDLEGSDGFNGEGWEELSADDFSD 120

Query: 121 NDDAEPEDDD 123
           +DDAEP DD+
Sbjct: 121 DDDAEPRDDE 126

[Close]

BLAST of Clc11G19460 vs. ExPASy TrEMBL
Match: A0A6J1F8K5 (uncharacterized protein LOC111443300 OS=Cucurbita moschata OX=3662 GN=LOC111443300 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 4.9e-21
Identity = 79/130 (60.77%), Postives = 92/130 (70.77%), Query Frame = 0


Query: 1   MASRLILKDAKLALRFLILRNPASSAPSAQTIQNLLLPILPRQSASGLLGGVCSSDRPLL 60
           MASR ILKD K  + FL LRNPASS P AQ+I N LLP  P QSASG L  +  SDRPLL
Sbjct: 1   MASRSILKDVKAPIYFL-LRNPASSVPLAQSIHNHLLP-FPTQSASGFLRELGLSDRPLL 60

Query: 61  SRDLNSSFDGGLRIEVRGKREPEIEETDEFGENESESDLEFSD--------DFSGDEFS- 120
            R  NSSFDGG RIEVRGK++P IE+ DE  +++S+SD E SD        +FSGD+FS 
Sbjct: 61  PRHFNSSFDGGFRIEVRGKQQPVIEDIDE--QSDSDSDFEGSDGWDGEGCEEFSGDDFSD 120

Query: 121 DNDDAEPEDD 122
           D+DDAEP DD
Sbjct: 121 DDDDAEPGDD 126

[Close]

BLAST of Clc11G19460 vs. ExPASy TrEMBL
Match: A0A5A7V875 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G00320 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.2e-19
Identity = 76/125 (60.80%), Postives = 86/125 (68.80%), Query Frame = 0


Query: 1   MASRLILKDAKLALRFLILRNPASSAPSAQTIQNLLLPILPRQSASGLLGGVCSSDRPLL 60
           MASRLILKD K  LRFL LRNPASSAPSAQ IQNLLLPI PRQ  SG LG VC+  RP L
Sbjct: 62  MASRLILKDIKTPLRFL-LRNPASSAPSAQAIQNLLLPI-PRQYPSGFLGQVCTGGRPQL 121

Query: 61  SRDLNSSFDGGLRIEVRGKREPEIEETDEFGENESESDLEFSDDFSG--DEFSDNDDAEP 120
           S   NSS DGG RIEVRGK+E    + D   E +S+ + E  D F    D+F D D+ EP
Sbjct: 122 SGVFNSSVDGGFRIEVRGKQELANYDDDNM-EIDSDFEKECPDGFDSDDDDFFDTDEMEP 181

Query: 121 EDDDN 124
           +DDD+
Sbjct: 182 QDDDD 183

[Close]

BLAST of Clc11G19460 vs. ExPASy TrEMBL
Match: A0A0A0L3F1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G637720 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.0e-06
Identity = 38/44 (86.36%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 1  MASRLILKDAKLALRFLILRNPASSAPSAQTIQNLLLPILPRQS 45
          MASRLILKD K  LRFL LRNPASSAPSAQ IQNLLLPI PRQS
Sbjct: 1  MASRLILKDIKAPLRFL-LRNPASSAPSAQAIQNLLLPI-PRQS 42

The following BLAST results are available for this feature:

BLAST of Clc11G19460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022976605.1	4.4e-24	63.08	uncharacterized protein LOC111476951 [Cucurbita maxima]	[more]
KAG6591964.1	9.2e-22	61.54	hypothetical protein SDJN03_14310, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022936831.1	1.0e-20	60.77	uncharacterized protein LOC111443300 [Cucurbita moschata]	[more]
KAA0064333.1	2.5e-19	60.80	hypothetical protein E6C27_scaffold255G00320 [Cucumis melo var. makuwa]	[more]
KAE8649846.1	1.2e-18	60.98	hypothetical protein Csa_012085 [Cucumis sativus]	[more]

BLAST of Clc11G19460 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc11G19460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IJY0	2.1e-24	63.08	uncharacterized protein LOC111476951 OS=Cucurbita maxima OX=3661 GN=LOC111476951...	[more]
A0A6J1F8K5	4.9e-21	60.77	uncharacterized protein LOC111443300 OS=Cucurbita moschata OX=3662 GN=LOC1114433...	[more]
A0A5A7V875	1.2e-19	60.80	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0L3F1	2.0e-06	86.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G637720 PE=4 SV=1	[more]

BLAST of Clc11G19460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G19460.1	Clc11G19460.1	mRNA