Clc11G19450 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G19450
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	translation initiation factor IF-1, chloroplastic-like
Location	ClcChr11: 29929452 .. 29929889 (+)
RNA-Seq Expression	Clc11G19450
Synteny	Clc11G19450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAGCACAAATCTGCTCCAATTCCCTTTACTTCAACCCCACTTCCGGCCACCGGCCACTCTCCTTTTTCCTGCCGTCAAATCCCATCTTTCCGTCGTCTCAATCACTCTTCCCAGCTCCCAATTCCTCCGTAGCCCTTCCCATGCTCCGCGACCGGCAGGGTTCGCTCTCATGGCAAAGTCTCCAAAAAACGACACCTCCGAGCAGAAATGGAGCCATGAAGGCTCCGTCGTTGAGTCTCTTCCCAATGGGATGTTCAGGGTTCGATTGGATAATGAAGACCTTATTTTAGGCTACATATCCGGTAAGATTCGGAAGAATTTTGTGCGTATTTTGCCTGGTGATAGGGTCAGGGTTGAAGTTAGCCGTTATGATTCTACTAAAGGCCGTATTGTCTATAGACTTCGAAGCAGTACTAAAGATTCATCTTCATGA

mRNA sequence

ATGTTGAGCACAAATCTGCTCCAATTCCCTTTACTTCAACCCCACTTCCGGCCACCGGCCACTCTCCTTTTTCCTGCCGTCAAATCCCATCTTTCCGTCGTCTCAATCACTCTTCCCAGCTCCCAATTCCTCCGTAGCCCTTCCCATGCTCCGCGACCGGCAGGGTTCGCTCTCATGGCAAAGTCTCCAAAAAACGACACCTCCGAGCAGAAATGGAGCCATGAAGGCTCCGTCGTTGAGTCTCTTCCCAATGGGATGTTCAGGGTTCGATTGGATAATGAAGACCTTATTTTAGGCTACATATCCGGTAAGATTCGGAAGAATTTTGTGCGTATTTTGCCTGGTGATAGGGTCAGGGTTGAAGTTAGCCGTTATGATTCTACTAAAGGCCGTATTGTCTATAGACTTCGAAGCAGTACTAAAGATTCATCTTCATGA

Coding sequence (CDS)

ATGTTGAGCACAAATCTGCTCCAATTCCCTTTACTTCAACCCCACTTCCGGCCACCGGCCACTCTCCTTTTTCCTGCCGTCAAATCCCATCTTTCCGTCGTCTCAATCACTCTTCCCAGCTCCCAATTCCTCCGTAGCCCTTCCCATGCTCCGCGACCGGCAGGGTTCGCTCTCATGGCAAAGTCTCCAAAAAACGACACCTCCGAGCAGAAATGGAGCCATGAAGGCTCCGTCGTTGAGTCTCTTCCCAATGGGATGTTCAGGGTTCGATTGGATAATGAAGACCTTATTTTAGGCTACATATCCGGTAAGATTCGGAAGAATTTTGTGCGTATTTTGCCTGGTGATAGGGTCAGGGTTGAAGTTAGCCGTTATGATTCTACTAAAGGCCGTATTGTCTATAGACTTCGAAGCAGTACTAAAGATTCATCTTCATGA

Protein sequence

MLSTNLLQFPLLQPHFRPPATLLFPAVKSHLSVVSITLPSSQFLRSPSHAPRPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSSS

Homology

[Close]

BLAST of Clc11G19450 vs. NCBI nr
Match: XP_038899010.1 (translation initiation factor IF-1, chloroplastic [Benincasa hispida])

HSP 1 Score: 252.7 bits (644), Expect = 1.9e-63
Identity = 131/145 (90.34%), Postives = 135/145 (93.10%), Query Frame = 0


Query: 1   MLSTNLLQFPLLQPHFRPPATLLFPAVKSHLSVVSITLPSSQFLRSPSHAPRPAGFALMA 60
           M ST LLQFPLLQ HFRPP+TL FPAVKSHLSVVSIT P++QFL +PSHA   AGF LMA
Sbjct: 1   MSSTILLQFPLLQSHFRPPSTLFFPAVKSHLSVVSITFPTTQFLHNPSHA--SAGFVLMA 60

Query: 61  KSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRV 120
           KSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRV
Sbjct: 61  KSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRV 120

Query: 121 EVSRYDSTKGRIVYRLRSSTKDSSS 146
           EVSRYDSTKGRIVYRLRSSTKDSSS
Sbjct: 121 EVSRYDSTKGRIVYRLRSSTKDSSS 143

[Close]

BLAST of Clc11G19450 vs. NCBI nr
Match: KAA0064332.1 (translation initiation factor IF-1 [Cucumis melo var. makuwa] >TYK20254.1 translation initiation factor IF-1 [Cucumis melo var. makuwa])

HSP 1 Score: 250.4 bits (638), Expect = 9.7e-63
Identity = 131/145 (90.34%), Postives = 135/145 (93.10%), Query Frame = 0


Query: 1   MLSTNLLQFPLLQPHFRPPATLLFPAVKSHLSVVSITLPSSQFLRSPSHAPRPAGFALMA 60
           M STNLLQFPLLQ HFRPP+TLLFP VKSHLSVVSI+ P+SQFL +PSHA  P GFALMA
Sbjct: 1   MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHA--PPGFALMA 60

Query: 61  KSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRV 120
           KSPKNDTSEQK SHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRV
Sbjct: 61  KSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRV 120

Query: 121 EVSRYDSTKGRIVYRLRSSTKDSSS 146
           EVSRYDSTKGRIVYRLRSS KDSSS
Sbjct: 121 EVSRYDSTKGRIVYRLRSSGKDSSS 143

[Close]

BLAST of Clc11G19450 vs. NCBI nr
Match: XP_011654076.1 (uncharacterized protein LOC101206284 [Cucumis sativus] >KGN55131.1 hypothetical protein Csa_012104 [Cucumis sativus])

HSP 1 Score: 237.7 bits (605), Expect = 6.5e-59
Identity = 127/145 (87.59%), Postives = 134/145 (92.41%), Query Frame = 0


Query: 1   MLSTNLLQFPLLQPHFRPPATLLFPAVKSHLSVVSITLPSSQFLRSPSHAPRPAGFALMA 60
           M STNLLQFPLLQ HFRPP+TLLFPAVKSHLS+ SI+ P+SQFL +PSHA  PA F LMA
Sbjct: 1   MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHA-SPA-FVLMA 60

Query: 61  KSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRV 120
           KSPKNDTSEQK SHEGSVVESLPNGMFRVRLDN+DLILGYISGKIRKNFVRILPGDRVRV
Sbjct: 61  KSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYISGKIRKNFVRILPGDRVRV 120

Query: 121 EVSRYDSTKGRIVYRLRSSTKDSSS 146
           EVSRYDSTKGRIVYR+R STKDSSS
Sbjct: 121 EVSRYDSTKGRIVYRMR-STKDSSS 142

[Close]

BLAST of Clc11G19450 vs. NCBI nr
Match: XP_022976599.1 (uncharacterized protein LOC111476947 [Cucurbita maxima])

HSP 1 Score: 227.6 bits (579), Expect = 6.7e-56
Identity = 116/140 (82.86%), Postives = 126/140 (90.00%), Query Frame = 0


Query: 1   MLSTNLLQFPLLQPHFRPPATLLFPAVKSHLSVVSITLPSSQFLRSPSHAPRPAGFALMA 60
           M STNLL+FPLL  H RPP+TL FPA+KSHLSVVSI  P+SQFLR+PSH   PA FALMA
Sbjct: 1   MSSTNLLRFPLLHLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHG--PARFALMA 60

Query: 61  KSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRV 120
           K PK+D++EQKWS+EGS+VESLPNGMFRVRLDNEDLILGYI GKIRKNFVRILPGDRVRV
Sbjct: 61  KPPKSDSTEQKWSYEGSIVESLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRV 120

Query: 121 EVSRYDSTKGRIVYRLRSST 141
           EVSRYDSTKGRIVYR RSST
Sbjct: 121 EVSRYDSTKGRIVYRNRSST 138

[Close]

BLAST of Clc11G19450 vs. NCBI nr
Match: XP_023535140.1 (uncharacterized protein LOC111796655 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 226.1 bits (575), Expect = 2.0e-55
Identity = 115/140 (82.14%), Postives = 126/140 (90.00%), Query Frame = 0


Query: 1   MLSTNLLQFPLLQPHFRPPATLLFPAVKSHLSVVSITLPSSQFLRSPSHAPRPAGFALMA 60
           M STNLL+FPLLQ H RPP+TL FPA+KSHL VVSI  P+SQFLR+PSH   PA FALMA
Sbjct: 1   MSSTNLLRFPLLQLHSRPPSTLFFPAIKSHLPVVSIAFPTSQFLRNPSHG--PARFALMA 60

Query: 61  KSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRV 120
           K PK+D++EQKWS+EGS+VESLPNGMFRVRLDNEDLILGYI GKIRKNFVRILPGDRVRV
Sbjct: 61  KPPKSDSTEQKWSYEGSIVESLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRV 120

Query: 121 EVSRYDSTKGRIVYRLRSST 141
           EVSRYDSTKGRIVYR RSS+
Sbjct: 121 EVSRYDSTKGRIVYRHRSSS 138

[Close]

BLAST of Clc11G19450 vs. ExPASy Swiss-Prot
Match: Q94KR7 (Translation initiation factor IF-1, chloroplastic OS=Glycine max OX=3847 GN=infA PE=2 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.2e-32
Identity = 68/98 (69.39%), Postives = 79/98 (80.61%), Query Frame = 0


Query: 43  FLRSPSHAPRPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYIS 102
           FL  P   P     +  + +  + + EQKW HEG ++ESLPNGMFRVRLDNEDLILGYIS
Sbjct: 39  FLAPPPLLPAAPALSAASAAKPDKSGEQKWVHEGLIMESLPNGMFRVRLDNEDLILGYIS 98

Query: 103 GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSST 141
           GKIRKN+VRILPGDRV+VEV+RYDS+KGRIVYRLRSST
Sbjct: 99  GKIRKNYVRILPGDRVKVEVTRYDSSKGRIVYRLRSST 136

[Close]

BLAST of Clc11G19450 vs. ExPASy Swiss-Prot
Match: A0A370 (Translation initiation factor IF-1, chloroplastic OS=Coffea arabica OX=13443 GN=infA PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.9e-29
Identity = 60/75 (80.00%), Postives = 71/75 (94.67%), Query Frame = 0


Query: 69  EQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDST 128
           EQKW+HEG + ESLPNGMFRVRLDNEDLILGY+SGKIR++F+RILPGDRV++EVSRYDST
Sbjct: 3   EQKWTHEGLITESLPNGMFRVRLDNEDLILGYVSGKIRRSFIRILPGDRVKIEVSRYDST 62

Query: 129 KGRIVYRLRSSTKDS 144
           +GRI+YRLR+  KDS
Sbjct: 63  RGRIIYRLRN--KDS 75

[Close]

BLAST of Clc11G19450 vs. ExPASy Swiss-Prot
Match: Q09G11 (Translation initiation factor IF-1, chloroplastic OS=Platanus occidentalis OX=4403 GN=infA PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.9e-29
Identity = 61/76 (80.26%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 69  EQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDST 128
           EQKW HEG + ESLPNGMFRVRLDNEDLILGY+SGKIR++F+RILPGDRV++EVSRYDST
Sbjct: 3   EQKWIHEGLITESLPNGMFRVRLDNEDLILGYVSGKIRRSFIRILPGDRVKIEVSRYDST 62

Query: 129 KGRIVYRLRSSTKDSS 145
           +GRI+YRLRS  KDS+
Sbjct: 63  RGRIIYRLRS--KDSN 76

[Close]

BLAST of Clc11G19450 vs. ExPASy Swiss-Prot
Match: Q94KR9 (Translation initiation factor IF-1, chloroplastic OS=Solanum lycopersicum OX=4081 GN=infA PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.5e-29
Identity = 56/71 (78.87%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 67  TSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYD 126
           + EQKW+HEGS+ ESLPNGMFRV+LDN D++LGYISGKIRKNF+R+LPGDRV++EVSRYD
Sbjct: 81  SQEQKWTHEGSITESLPNGMFRVKLDNADVVLGYISGKIRKNFIRLLPGDRVKIEVSRYD 140

Query: 127 STKGRIVYRLR 138
           S+KGRI+YRLR
Sbjct: 141 SSKGRIIYRLR 151

[Close]

BLAST of Clc11G19450 vs. ExPASy Swiss-Prot
Match: Q7ICQ5 (Translation initiation factor IF-1, chloroplastic OS=Fouquieria splendens OX=13533 GN=infA PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.3e-29
Identity = 60/75 (80.00%), Postives = 70/75 (93.33%), Query Frame = 0


Query: 69  EQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDST 128
           EQKW HEG + ESLPNGMFRVRLDNEDLILGY+SGKIR++F+RILPGDRV++EVSRYDST
Sbjct: 3   EQKWIHEGLITESLPNGMFRVRLDNEDLILGYVSGKIRRSFIRILPGDRVKIEVSRYDST 62

Query: 129 KGRIVYRLRSSTKDS 144
           +GRI+YRLR+  KDS
Sbjct: 63  RGRIIYRLRN--KDS 75

[Close]

BLAST of Clc11G19450 vs. ExPASy TrEMBL
Match: A0A5A7V7J3 (Translation initiation factor IF-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003940 PE=3 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 4.7e-63
Identity = 131/145 (90.34%), Postives = 135/145 (93.10%), Query Frame = 0


Query: 1   MLSTNLLQFPLLQPHFRPPATLLFPAVKSHLSVVSITLPSSQFLRSPSHAPRPAGFALMA 60
           M STNLLQFPLLQ HFRPP+TLLFP VKSHLSVVSI+ P+SQFL +PSHA  P GFALMA
Sbjct: 1   MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHA--PPGFALMA 60

Query: 61  KSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRV 120
           KSPKNDTSEQK SHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRV
Sbjct: 61  KSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRV 120

Query: 121 EVSRYDSTKGRIVYRLRSSTKDSSS 146
           EVSRYDSTKGRIVYRLRSS KDSSS
Sbjct: 121 EVSRYDSTKGRIVYRLRSSGKDSSS 143

[Close]

BLAST of Clc11G19450 vs. ExPASy TrEMBL
Match: A0A0A0L4Q7 (S1-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G637710 PE=3 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 3.1e-59
Identity = 127/145 (87.59%), Postives = 134/145 (92.41%), Query Frame = 0


Query: 1   MLSTNLLQFPLLQPHFRPPATLLFPAVKSHLSVVSITLPSSQFLRSPSHAPRPAGFALMA 60
           M STNLLQFPLLQ HFRPP+TLLFPAVKSHLS+ SI+ P+SQFL +PSHA  PA F LMA
Sbjct: 1   MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHA-SPA-FVLMA 60

Query: 61  KSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRV 120
           KSPKNDTSEQK SHEGSVVESLPNGMFRVRLDN+DLILGYISGKIRKNFVRILPGDRVRV
Sbjct: 61  KSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYISGKIRKNFVRILPGDRVRV 120

Query: 121 EVSRYDSTKGRIVYRLRSSTKDSSS 146
           EVSRYDSTKGRIVYR+R STKDSSS
Sbjct: 121 EVSRYDSTKGRIVYRMR-STKDSSS 142

[Close]

BLAST of Clc11G19450 vs. ExPASy TrEMBL
Match: A0A6J1IP00 (uncharacterized protein LOC111476947 OS=Cucurbita maxima OX=3661 GN=LOC111476947 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 3.3e-56
Identity = 116/140 (82.86%), Postives = 126/140 (90.00%), Query Frame = 0


Query: 1   MLSTNLLQFPLLQPHFRPPATLLFPAVKSHLSVVSITLPSSQFLRSPSHAPRPAGFALMA 60
           M STNLL+FPLL  H RPP+TL FPA+KSHLSVVSI  P+SQFLR+PSH   PA FALMA
Sbjct: 1   MSSTNLLRFPLLHLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHG--PARFALMA 60

Query: 61  KSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRV 120
           K PK+D++EQKWS+EGS+VESLPNGMFRVRLDNEDLILGYI GKIRKNFVRILPGDRVRV
Sbjct: 61  KPPKSDSTEQKWSYEGSIVESLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRV 120

Query: 121 EVSRYDSTKGRIVYRLRSST 141
           EVSRYDSTKGRIVYR RSST
Sbjct: 121 EVSRYDSTKGRIVYRNRSST 138

[Close]

BLAST of Clc11G19450 vs. ExPASy TrEMBL
Match: A0A6J1FET6 (uncharacterized protein LOC111443299 OS=Cucurbita moschata OX=3662 GN=LOC111443299 PE=3 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.8e-54
Identity = 113/140 (80.71%), Postives = 125/140 (89.29%), Query Frame = 0


Query: 1   MLSTNLLQFPLLQPHFRPPATLLFPAVKSHLSVVSITLPSSQFLRSPSHAPRPAGFALMA 60
           M STNLL+FPLLQ H RPP+TL FPA+KSHLSVVSI   +SQFLR+PSH   PA FALMA
Sbjct: 1   MSSTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFSTSQFLRNPSHG--PARFALMA 60

Query: 61  KSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRV 120
           K PK+D++EQKWS+EGS+V+SLPNGMFRVRLDNEDLILGYI GKIRKNFVRILPGDRVRV
Sbjct: 61  KPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRV 120

Query: 121 EVSRYDSTKGRIVYRLRSST 141
           EVSRYDS KGRIVYR RSS+
Sbjct: 121 EVSRYDSNKGRIVYRHRSSS 138

[Close]

BLAST of Clc11G19450 vs. ExPASy TrEMBL
Match: A0A6J1FLU6 (translation initiation factor IF-1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111446393 PE=3 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 4.0e-54
Identity = 117/145 (80.69%), Postives = 127/145 (87.59%), Query Frame = 0


Query: 1   MLSTNLLQFPLLQPHFRPPATLLFPAVKSHLSVVSITLPSSQFLRSPSHAPRPAGFALMA 60
           M STNLLQFPLLQ   RPP+T LFPA+KSH+SVVSI  PSSQFL +PSH   P  F  MA
Sbjct: 1   MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHG--PVSFVPMA 60

Query: 61  KSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRV 120
           KSPK+++SEQK+SHEGSV+ESLPNGMFRV+LDNEDLILGYISGKIRKNFVRILPGDRVRV
Sbjct: 61  KSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRV 120

Query: 121 EVSRYDSTKGRIVYRLRSSTKDSSS 146
           EVSRYDSTKGRIVYR R STKD SS
Sbjct: 121 EVSRYDSTKGRIVYRHR-STKDPSS 142

[Close]

BLAST of Clc11G19450 vs. TAIR 10
Match: AT4G11175.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 101.3 bits (251), Expect = 6.8e-22
Identity = 50/76 (65.79%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 63  PKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEV 122
           P+      K   EG V ESLPNGMFRV L+N D ILGYI GKIRKNF+RILPGD+V+VE+
Sbjct: 64  PQVKEGSNKTVIEGLVTESLPNGMFRVDLENGDNILGYICGKIRKNFIRILPGDKVKVEM 123

Query: 123 SRYDSTKGRIVYRLRS 139
           S YDSTKGRI++R+ S
Sbjct: 124 SVYDSTKGRIIFRMSS 139

The following BLAST results are available for this feature:

BLAST of Clc11G19450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899010.1	1.9e-63	90.34	translation initiation factor IF-1, chloroplastic [Benincasa hispida]	[more]
KAA0064332.1	9.7e-63	90.34	translation initiation factor IF-1 [Cucumis melo var. makuwa] >TYK20254.1 transl...	[more]
XP_011654076.1	6.5e-59	87.59	uncharacterized protein LOC101206284 [Cucumis sativus] >KGN55131.1 hypothetical ...	[more]
XP_022976599.1	6.7e-56	82.86	uncharacterized protein LOC111476947 [Cucurbita maxima]	[more]
XP_023535140.1	2.0e-55	82.14	uncharacterized protein LOC111796655 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Clc11G19450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94KR7	3.2e-32	69.39	Translation initiation factor IF-1, chloroplastic OS=Glycine max OX=3847 GN=infA...	[more]
A0A370	1.9e-29	80.00	Translation initiation factor IF-1, chloroplastic OS=Coffea arabica OX=13443 GN=...	[more]
Q09G11	1.9e-29	80.26	Translation initiation factor IF-1, chloroplastic OS=Platanus occidentalis OX=44...	[more]
Q94KR9	2.5e-29	78.87	Translation initiation factor IF-1, chloroplastic OS=Solanum lycopersicum OX=408...	[more]
Q7ICQ5	4.3e-29	80.00	Translation initiation factor IF-1, chloroplastic OS=Fouquieria splendens OX=135...	[more]

BLAST of Clc11G19450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V7J3	4.7e-63	90.34	Translation initiation factor IF-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A0A0L4Q7	3.1e-59	87.59	S1-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G637710 PE=...	[more]
A0A6J1IP00	3.3e-56	82.86	uncharacterized protein LOC111476947 OS=Cucurbita maxima OX=3661 GN=LOC111476947...	[more]
A0A6J1FET6	1.8e-54	80.71	uncharacterized protein LOC111443299 OS=Cucurbita moschata OX=3662 GN=LOC1114432...	[more]
A0A6J1FLU6	4.0e-54	80.69	translation initiation factor IF-1, chloroplastic-like OS=Cucurbita moschata OX=...	[more]

BLAST of Clc11G19450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G11175.1	6.8e-22	65.79	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022967	RNA-binding domain, S1	SMART	SM00316	S1_6	coord: 69..137 e-value: 0.005 score: 26.1
IPR004368	Translation initiation factor IF-1	TIGRFAM	TIGR00008	TIGR00008	coord: 69..136 e-value: 7.2E-35 score: 116.8
IPR004368	Translation initiation factor IF-1	PANTHER	PTHR33370	TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTIC	coord: 51..141
IPR004368	Translation initiation factor IF-1	HAMAP	MF_00075	IF_1	coord: 59..137 score: 22.967432
IPR004368	Translation initiation factor IF-1	CDD	cd04451	S1_IF1	coord: 75..135 e-value: 1.56716E-33 score: 110.303
None	No IPR available	GENE3D	2.40.50.140		coord: 63..144 e-value: 8.5E-33 score: 113.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..75
None	No IPR available	PANTHER	PTHR33370:SF1	TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTIC	coord: 51..141
IPR006196	RNA-binding domain, S1, IF1 type	PFAM	PF01176	eIF-1a	coord: 75..135 e-value: 6.8E-22 score: 77.1
IPR006196	RNA-binding domain, S1, IF1 type	PROSITE	PS50832	S1_IF1_TYPE	coord: 63..137 score: 20.037275
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 69..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G19450.2	Clc11G19450.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005829	cytosol
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0043022	ribosome binding
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003723	RNA binding