Clc11G19310 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G19310
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Squamosa promoter-binding protein
Location	ClcChr11: 29781660 .. 29782708 (-)
RNA-Seq Expression	Clc11G19310
Synteny	Clc11G19310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGGTTTTGTAATTGACTTATGGCTTTGGAAGTAGTAATCCATAGAATTATAAGGAAAATTATGCGAATAATTTGAGTTTGTTACTAACTTAAAATTATTATAAAACCCTCCATTAGACATTCTGTCATTCACTGTTCCATCATCCAAACTGGCACTCACAAAGAAAAACTGTGGTCCTCACCACTTTTTTCTTTCCCACCTTTTTCCTTGCAGTCTCATAGTCTTGATGTAACTTCTAAGTTCCTATATTTTTGCTCCCACCATTTCCACAAGCAGCATCAACACCACCACCATCCCTACCGCCATTGAGCTGCCGGAGTTGGCAATGGAGGCAAAGAGCTTTGAAGGCAAGCATAATTTCAAAGATAAGCCTTACAAGGAAGGCATGGTCGATGACGATTTAGAATACGAGACGGAGGAGGAAGAGGTTGGCGGAGGAGGCCATGGTGGTAGCAATGCTTGCAATGCATTGGGTTATTTTGAGAATGAGAAAAAGAAAAGAGGGGCAGCAGTTTCCGGCCGTGGAAGGTCCGGTGGGGGCATCTCTTCGCCGAGTTGCCAAGCGCACAACTGTGCAACAGATTTGAGTGAAGCAAAGAGGTATCACCGGCGCCACAAGGTCTGCGAGTTTCACTCGAAGGCGGCGGTTGTCATGGTTGCTGGAATTCGCCAGCGTTTCTGTCAGCAATGCAGCAGGTATTTGATTTGATCCTCCTCAACAATATAAGCAAAAACACTTCTGTTAATATTCTTTCCACTTTCTTTTTGGTTATGGTAACATGTTTGTTGTTGGTGGTGATGATCAGGTTCCATGAGTTAACAGAATTTGATGAAGCAAAAAGGAGCTGTCGTCGAAGGCTGGCAGGGCACAACGAACGTCGGCGTAAGAGCTCGGCAGAGTGTCAAGGGGAAAGCACGAGCCGTAAAGGATCAGCCCCGCAGTCGAAGGAAAGCCATTGTAGGCAATTGGTGGAAGATCAAAGAAGCAGAATTCAGATGGCTCCTCCAGGAAGTTCTGGCTATAAACACCTGCATATCAGATAA

mRNA sequence

ATGGTTGACATTCTGTCATTCACTGTTCCATCATCCAAACTGGCACTCACAAAGAAAAACTGTGGTCCTCACCACTTTTTTCTTTCCCACCTTTTTCCTTGCAGTCTCATAGTCTTGATTTCCTATATTTTTGCTCCCACCATTTCCACAAGCAGCATCAACACCACCACCATCCCTACCGCCATTGAGCTGCCGGAGTTGGCAATGGAGGCAAAGAGCTTTGAAGGCAAGCATAATTTCAAAGATAAGCCTTACAAGGAAGGCATGGTCGATGACGATTTAGAATACGAGACGGAGGAGGAAGAGGTTGGCGGAGGAGGCCATGGTGGTAGCAATGCTTGCAATGCATTGGGTTATTTTGAGAATGAGAAAAAGAAAAGAGGGGCAGCAGTTTCCGGCCGTGGAAGGTCCGGTGGGGGCATCTCTTCGCCGAGTTGCCAAGCGCACAACTGTGCAACAGATTTGAGTGAAGCAAAGAGGTATCACCGGCGCCACAAGGTCTGCGAGTTTCACTCGAAGGCGGCGGTTGTCATGGTTGCTGGAATTCGCCAGCGTTTCTGTCAGCAATGCAGCAGGTTCCATGAGTTAACAGAATTTGATGAAGCAAAAAGGAGCTGTCGTCGAAGGCTGGCAGGGCACAACGAACGTCGGCGTAAGAGCTCGGCAGAGTGTCAAGGGGAAAGCACGAGCCGTAAAGGATCAGCCCCGCAGTCGAAGGAAAGCCATTGTAGGCAATTGGTGGAAGATCAAAGAAGCAGAATTCAGATGGCTCCTCCAGGAAGTTCTGGCTATAAACACCTGCATATCAGATAA

Coding sequence (CDS)

ATGGTTGACATTCTGTCATTCACTGTTCCATCATCCAAACTGGCACTCACAAAGAAAAACTGTGGTCCTCACCACTTTTTTCTTTCCCACCTTTTTCCTTGCAGTCTCATAGTCTTGATTTCCTATATTTTTGCTCCCACCATTTCCACAAGCAGCATCAACACCACCACCATCCCTACCGCCATTGAGCTGCCGGAGTTGGCAATGGAGGCAAAGAGCTTTGAAGGCAAGCATAATTTCAAAGATAAGCCTTACAAGGAAGGCATGGTCGATGACGATTTAGAATACGAGACGGAGGAGGAAGAGGTTGGCGGAGGAGGCCATGGTGGTAGCAATGCTTGCAATGCATTGGGTTATTTTGAGAATGAGAAAAAGAAAAGAGGGGCAGCAGTTTCCGGCCGTGGAAGGTCCGGTGGGGGCATCTCTTCGCCGAGTTGCCAAGCGCACAACTGTGCAACAGATTTGAGTGAAGCAAAGAGGTATCACCGGCGCCACAAGGTCTGCGAGTTTCACTCGAAGGCGGCGGTTGTCATGGTTGCTGGAATTCGCCAGCGTTTCTGTCAGCAATGCAGCAGGTTCCATGAGTTAACAGAATTTGATGAAGCAAAAAGGAGCTGTCGTCGAAGGCTGGCAGGGCACAACGAACGTCGGCGTAAGAGCTCGGCAGAGTGTCAAGGGGAAAGCACGAGCCGTAAAGGATCAGCCCCGCAGTCGAAGGAAAGCCATTGTAGGCAATTGGTGGAAGATCAAAGAAGCAGAATTCAGATGGCTCCTCCAGGAAGTTCTGGCTATAAACACCTGCATATCAGATAA

Protein sequence

MVDILSFTVPSSKLALTKKNCGPHHFFLSHLFPCSLIVLISYIFAPTISTSSINTTTIPTAIELPELAMEAKSFEGKHNFKDKPYKEGMVDDDLEYETEEEEVGGGGHGGSNACNALGYFENEKKKRGAAVSGRGRSGGGISSPSCQAHNCATDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQQCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTSRKGSAPQSKESHCRQLVEDQRSRIQMAPPGSSGYKHLHIR

Homology

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BLAST of Clc11G19310 vs. NCBI nr
Match: KAG7024822.1 (Squamosa promoter-binding-like protein 5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 406.8 bits (1044), Expect = 1.5e-109
Identity = 209/241 (86.72%), Postives = 220/241 (91.29%), Query Frame = 0


Query: 31  LFPCSLIVLISYIFAPTISTSSINTT-TIPTAIELPELAMEAKSFEGKHNFKDKPYKEGM 90
           L P S  +LISYIFAPTISTSS  TT T  T  ELPELAMEAKS+EGKHN KDK YKEG+
Sbjct: 8   LDPESHSLLISYIFAPTISTSSRTTTNTTTTTTELPELAMEAKSYEGKHNLKDKAYKEGV 67

Query: 91  VDDDLEYETEEEEVGGGGHGGSNACNALGYFENEKKKRGAAVSGRGRSGGGISSPSCQAH 150
           +DDDLEYETEEE+VGGGGHGG+NAC ALGY+ENEKKKRG AVSGRGRSG G+SSPSCQAH
Sbjct: 68  IDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRGTAVSGRGRSGSGVSSPSCQAH 127

Query: 151 NCATDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQQCSRFHELTEFDEAKRSCRRR 210
           NC TDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQQCSRFHELTEFD+AKRSCRRR
Sbjct: 128 NCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQQCSRFHELTEFDDAKRSCRRR 187

Query: 211 LAGHNERRRKSSAECQGESTSRKGSAPQSKESHCRQLVEDQRSRIQMAPPGSSGYKHLHI 270
           LAGHNERRRKSSAECQGEST+RKGSA QSKE HCRQL+EDQRSRIQMAP GSSGYK LHI
Sbjct: 188 LAGHNERRRKSSAECQGESTNRKGSASQSKEGHCRQLMEDQRSRIQMAPTGSSGYKQLHI 247

[Close]

BLAST of Clc11G19310 vs. NCBI nr
Match: XP_038898687.1 (squamosa promoter-binding-like protein 3 [Benincasa hispida])

HSP 1 Score: 375.6 bits (963), Expect = 3.7e-100
Identity = 190/202 (94.06%), Postives = 193/202 (95.54%), Query Frame = 0


Query: 69  MEAKSFEGKHNFKDKPYKEGMVDDDLEYETEEEEVGGGGHGGSNACNALGYFENEKKKRG 128
           MEAKS EGKHNFKDK  +EGMVDDDLEYET EEEVGG GHGGSNAC ALGYFENEKKKRG
Sbjct: 1   MEAKSIEGKHNFKDKTCREGMVDDDLEYET-EEEVGGAGHGGSNACTALGYFENEKKKRG 60

Query: 129 AAVSGRGRSGGGISSPSCQAHNCATDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 188
           AAVSGRGRSGG +SSPSCQAHNCATDLSEAKRYHRRHKVCE HSKAAVVMVAGIRQRFCQ
Sbjct: 61  AAVSGRGRSGGCVSSPSCQAHNCATDLSEAKRYHRRHKVCELHSKAAVVMVAGIRQRFCQ 120

Query: 189 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTSRKGSAPQSKESHCRQLVE 248
           QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTSRKGS PQSKESHCRQLVE
Sbjct: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTSRKGSTPQSKESHCRQLVE 180

Query: 249 DQRSRIQMAPPGSSGYKHLHIR 271
           DQRSRIQ+APPGSSGYKHLHIR
Sbjct: 181 DQRSRIQIAPPGSSGYKHLHIR 201

[Close]

BLAST of Clc11G19310 vs. NCBI nr
Match: XP_022937043.1 (squamosa promoter-binding protein 1-like [Cucurbita moschata])

HSP 1 Score: 374.8 bits (961), Expect = 6.3e-100
Identity = 183/202 (90.59%), Postives = 193/202 (95.54%), Query Frame = 0


Query: 69  MEAKSFEGKHNFKDKPYKEGMVDDDLEYETEEEEVGGGGHGGSNACNALGYFENEKKKRG 128
           MEAKS+EGKHN KDK YKEG++DDDLEYETEEE+VGGGGHGG+NAC ALGY+ENEKKKRG
Sbjct: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60

Query: 129 AAVSGRGRSGGGISSPSCQAHNCATDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 188
            +VSGRGRSG G+SSPSCQAHNC TDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ
Sbjct: 61  TSVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120

Query: 189 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTSRKGSAPQSKESHCRQLVE 248
           QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGEST+RKGSA QSKE HCRQL+E
Sbjct: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSASQSKEGHCRQLME 180

Query: 249 DQRSRIQMAPPGSSGYKHLHIR 271
           DQRSRIQMAP GSSGYKHLHIR
Sbjct: 181 DQRSRIQMAPTGSSGYKHLHIR 202

[Close]

BLAST of Clc11G19310 vs. NCBI nr
Match: XP_023536105.1 (squamosa promoter-binding protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 374.4 bits (960), Expect = 8.3e-100
Identity = 183/202 (90.59%), Postives = 192/202 (95.05%), Query Frame = 0


Query: 69  MEAKSFEGKHNFKDKPYKEGMVDDDLEYETEEEEVGGGGHGGSNACNALGYFENEKKKRG 128
           MEAKS+EGKHN KDK YKEG++DDDLEYETEEE+VGGGGHGG+NAC ALGY+ENEKKKRG
Sbjct: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60

Query: 129 AAVSGRGRSGGGISSPSCQAHNCATDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 188
            AVSGRGRSG G+SSPSCQAHNC TDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ
Sbjct: 61  TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120

Query: 189 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTSRKGSAPQSKESHCRQLVE 248
           QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGEST+RKGS  QSKE HCRQL+E
Sbjct: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSVSQSKEGHCRQLME 180

Query: 249 DQRSRIQMAPPGSSGYKHLHIR 271
           DQRSRIQMAP GSSGYKHLHIR
Sbjct: 181 DQRSRIQMAPTGSSGYKHLHIR 202

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BLAST of Clc11G19310 vs. NCBI nr
Match: KAG6591949.1 (Squamosa promoter-binding-like protein 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 368.6 bits (945), Expect = 4.5e-98
Identity = 181/202 (89.60%), Postives = 191/202 (94.55%), Query Frame = 0


Query: 69  MEAKSFEGKHNFKDKPYKEGMVDDDLEYETEEEEVGGGGHGGSNACNALGYFENEKKKRG 128
           MEAKS+EGKHN KDK YKEG++DDDLEYETEEE+VG GGHGG+NAC ALGY+ENEKKKRG
Sbjct: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGRGGHGGTNACTALGYYENEKKKRG 60

Query: 129 AAVSGRGRSGGGISSPSCQAHNCATDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 188
            AVSGRGRSG G+SSPSCQAHNC TDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ
Sbjct: 61  TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120

Query: 189 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTSRKGSAPQSKESHCRQLVE 248
           QCSRFHELTEFD+AKRSCRRRLAGHNERRRKSSAECQGEST+RKGSA QSKE HCRQL+E
Sbjct: 121 QCSRFHELTEFDDAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSASQSKEGHCRQLME 180

Query: 249 DQRSRIQMAPPGSSGYKHLHIR 271
           DQRSRIQMAP GSSGYK LHIR
Sbjct: 181 DQRSRIQMAPTGSSGYKQLHIR 202

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BLAST of Clc11G19310 vs. ExPASy Swiss-Prot
Match: Q6Z461 (Squamosa promoter-binding-like protein 13 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL13 PE=2 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.7e-34
Identity = 78/127 (61.42%), Postives = 89/127 (70.08%), Query Frame = 0


Query: 104 GGGGHGGSNACNALGYFENEKK-------KRGAAVSGRGRSGGGISSPSCQAHNCATDLS 163
           GGGG   S+A  A G   +          +RGA  +G G   GG   P CQ   C  DLS
Sbjct: 61  GGGGGSSSSAAVAAGASSSSSSSSVAAAARRGAGRAGGGAPSGGGGGPRCQVERCGVDLS 120

Query: 164 EAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQQCSRFHELTEFDEAKRSCRRRLAGHNER 223
           EA RY+RRHKVC+ HSK  VV+VAG+RQRFCQQCSRFHELTEFD+AKRSCRRRLAGHNER
Sbjct: 121 EAGRYNRRHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFDDAKRSCRRRLAGHNER 180

[Close]

BLAST of Clc11G19310 vs. ExPASy Swiss-Prot
Match: Q9S7A9 (Squamosa promoter-binding-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=SPL4 PE=1 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 5.3e-33
Identity = 92/204 (45.10%), Postives = 115/204 (56.37%), Query Frame = 0


Query: 69  MEAKSFEGKHNFKDKPYKEGMVDDDLEYETEEEEVGGGGHGGSNACNALGYFENEKKKRG 128
           ME K  +G+   K K Y   +V++D+E +T+EEE  G                     R 
Sbjct: 1   MEGKRSQGQGYMKKKSY---LVEEDMETDTDEEEEVG---------------------RD 60

Query: 129 AAVSGRGRSGGGISSPSCQAHNCATDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 188
                RG    G S   CQ   C  D+ EAK YHRRHKVCE H+KA+ V ++G+ QRFCQ
Sbjct: 61  RVRGSRGSINRGGSLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQ 120

Query: 189 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAE-CQGESTSRKGSAPQSKESHCRQLV 248
           QCSRFH+L EFDEAKRSCRRRLAGHNERRRKSS E   GE + R+G   Q        + 
Sbjct: 121 QCSRFHDLQEFDEAKRSCRRRLAGHNERRRKSSGESTYGEGSGRRGINGQV------VMQ 174

Query: 249 EDQRSRIQMA-PPGSSGYKHLHIR 271
             +RSR++M  P  +S +K   IR
Sbjct: 181 NQERSRVEMTLPMPNSSFKRPQIR 174

[Close]

BLAST of Clc11G19310 vs. ExPASy Swiss-Prot
Match: Q9S758 (Squamosa promoter-binding-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=SPL5 PE=2 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.5e-32
Identity = 86/202 (42.57%), Postives = 117/202 (57.92%), Query Frame = 0


Query: 69  MEAKSFEGKHNFKDKPYKEGMVDDDLEYETEEEEVGGGGHGGSNACNALGYFENEKKKRG 128
           ME +  + +   KDK     +V++++E   + EE  GG               +E K++ 
Sbjct: 1   MEGQRTQRRGYLKDKATVSNLVEEEMENGMDGEEEDGG---------------DEDKRKK 60

Query: 129 AAVSGRGRSGGGISSPSCQAHNCATDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 188
                RG S   + S  CQ   C  +L+EAK+Y+RRH+VCE H+KA+   VAG+RQRFCQ
Sbjct: 61  VMERVRGPSTDRVPSRLCQVDRCTVNLTEAKQYYRRHRVCEVHAKASAATVAGVRQRFCQ 120

Query: 189 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTSRKGSAPQSKESHCRQLVE 248
           QCSRFHEL EFDEAKRSCRRRLAGHNERRRK S +  GE + R+G + Q  ++  R  V+
Sbjct: 121 QCSRFHELPEFDEAKRSCRRRLAGHNERRRKISGDSFGEGSGRRGFSGQLIQTQERNRVD 180

Query: 249 DQRSRIQMAPPGSSGYKHLHIR 271
                 +  P  +S +K   IR
Sbjct: 181 ------RKLPMTNSSFKRPQIR 181

[Close]

BLAST of Clc11G19310 vs. ExPASy Swiss-Prot
Match: Q38741 (Squamosa promoter-binding protein 1 OS=Antirrhinum majus OX=4151 GN=SBP1 PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.3e-31
Identity = 69/101 (68.32%), Postives = 81/101 (80.20%), Query Frame = 0


Query: 121 ENEKKKRGAAVSGRGRSGGGISSPSCQAHNCATDLSEAKRYHRRHKVCEFHSKAAVVMVA 180
           E+ KK R    SG+  SG   +  SCQ  NCA +++ AK YHRRHKVCEFH+KA VV+ +
Sbjct: 29  EDSKKTRALTPSGKRASGS--TQRSCQVENCAAEMTNAKPYHRRHKVCEFHAKAPVVLHS 88

Query: 181 GIRQRFCQQCSRFHELTEFDEAKRSCRRRLAGHNERRRKSS 222
           G++QRFCQQCSRFHEL+EFDEAKRSCRRRLAGHNERRRKSS
Sbjct: 89  GLQQRFCQQCSRFHELSEFDEAKRSCRRRLAGHNERRRKSS 127

[Close]

BLAST of Clc11G19310 vs. ExPASy Swiss-Prot
Match: P93015 (Squamosa promoter-binding-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=SPL3 PE=1 SV=2)

HSP 1 Score: 131.0 bits (328), Expect = 2.1e-29
Identity = 74/157 (47.13%), Postives = 99/157 (63.06%), Query Frame = 0


Query: 67  LAMEAKSFEGKHNFKDKPYKEGMVDDDLEYETEEEEVGGGGHGGSNACNALGYFENEKKK 126
           ++M     EGK + ++   +E   ++  + +T EEE             AL     EKK+
Sbjct: 1   MSMRRSKAEGKRSLRELSEEEEEEEETEDEDTFEEE------------EAL-----EKKQ 60

Query: 127 RGAAVSGRGRSGGGISSPSCQAHNCATDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRF 186
           +G A S         SS  CQ  +C  D+S+AK+YH+RHKVC+FH+KA  V ++G+ QRF
Sbjct: 61  KGKATS---------SSGVCQVESCTADMSKAKQYHKRHKVCQFHAKAPHVRISGLHQRF 120

Query: 187 CQQCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAE 224
           CQQCSRFH L+EFDEAKRSCRRRLAGHNERRRKS+ +
Sbjct: 121 CQQCSRFHALSEFDEAKRSCRRRLAGHNERRRKSTTD 131

[Close]

BLAST of Clc11G19310 vs. ExPASy TrEMBL
Match: A0A6J1FEY0 (squamosa promoter-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111443461 PE=4 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 3.1e-100
Identity = 183/202 (90.59%), Postives = 193/202 (95.54%), Query Frame = 0


Query: 69  MEAKSFEGKHNFKDKPYKEGMVDDDLEYETEEEEVGGGGHGGSNACNALGYFENEKKKRG 128
           MEAKS+EGKHN KDK YKEG++DDDLEYETEEE+VGGGGHGG+NAC ALGY+ENEKKKRG
Sbjct: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60

Query: 129 AAVSGRGRSGGGISSPSCQAHNCATDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 188
            +VSGRGRSG G+SSPSCQAHNC TDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ
Sbjct: 61  TSVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120

Query: 189 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTSRKGSAPQSKESHCRQLVE 248
           QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGEST+RKGSA QSKE HCRQL+E
Sbjct: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSASQSKEGHCRQLME 180

Query: 249 DQRSRIQMAPPGSSGYKHLHIR 271
           DQRSRIQMAP GSSGYKHLHIR
Sbjct: 181 DQRSRIQMAPTGSSGYKHLHIR 202

[Close]

BLAST of Clc11G19310 vs. ExPASy TrEMBL
Match: A0A6J1IJV6 (squamosa promoter-binding protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111476934 PE=4 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 8.3e-98
Identity = 180/202 (89.11%), Postives = 191/202 (94.55%), Query Frame = 0


Query: 69  MEAKSFEGKHNFKDKPYKEGMVDDDLEYETEEEEVGGGGHGGSNACNALGYFENEKKKRG 128
           MEAKS+EGKHN KDK Y+EG+VDDDLEYETEEE+VGGGGHGG+NAC ALGY+ENEKKKRG
Sbjct: 1   MEAKSYEGKHNLKDKAYREGVVDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60

Query: 129 AAVSGRGRSGGGISSPSCQAHNCATDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 188
            AVSGRGRSG G+SSPSCQAHNC TDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ
Sbjct: 61  TAVSGRGRSGVGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120

Query: 189 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTSRKGSAPQSKESHCRQLVE 248
           QCSRFHELTEFDEAKRSCRRRLAGHNERRRK+SAECQGEST+RKG A QSKE  CRQL+E
Sbjct: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKNSAECQGESTNRKGPASQSKEGQCRQLME 180

Query: 249 DQRSRIQMAPPGSSGYKHLHIR 271
           DQR+RIQMAP GSSGYKHLHIR
Sbjct: 181 DQRTRIQMAPTGSSGYKHLHIR 202

[Close]

BLAST of Clc11G19310 vs. ExPASy TrEMBL
Match: A0A0A0L3D9 (Squamosa promoter-binding protein OS=Cucumis sativus OX=3659 GN=Csa_4G631590 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 6.6e-95
Identity = 185/206 (89.81%), Postives = 191/206 (92.72%), Query Frame = 0


Query: 69  MEAKSFEGKHNFKDKPYKEGMVDDDLEYETEEEEVGGGGHGG--SNACNALGYFENEKKK 128
           M+AKSFEGKHNFKDK     +VDDD EYETEEEEVGGGG GG  SNACNALGYF+NEKKK
Sbjct: 1   MDAKSFEGKHNFKDKT----VVDDDFEYETEEEEVGGGGGGGSNSNACNALGYFDNEKKK 60

Query: 129 RGAAVSGRGRSGGGISSPSCQAHNCATDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRF 188
           RGAAVSGRG+SGG +S PSCQAHNCA DLSEAKRYHRRHKVCEFHSKAA+VMVAGIRQRF
Sbjct: 61  RGAAVSGRGKSGGSVSLPSCQAHNCAADLSEAKRYHRRHKVCEFHSKAAIVMVAGIRQRF 120

Query: 189 CQQCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTSRKGSAP--QSKESHCR 248
           CQQCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAE QGESTSRKGSAP  QSKESHCR
Sbjct: 121 CQQCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAESQGESTSRKGSAPQAQSKESHCR 180

Query: 249 QLVEDQRSRIQMAPPGSSGYKHLHIR 271
           QLVEDQRSRIQMAPPGSSGYKHLHIR
Sbjct: 181 QLVEDQRSRIQMAPPGSSGYKHLHIR 202

[Close]

BLAST of Clc11G19310 vs. ExPASy TrEMBL
Match: A0A5D3DWS3 (Squamosa promoter-binding protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001760 PE=4 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 2.6e-91
Identity = 181/205 (88.29%), Postives = 189/205 (92.20%), Query Frame = 0


Query: 69  MEAKSFEGKHNFKDKPYKEGMVDDDLEYETEEEEVGGGGHG-GSNACNALGYFENEKKKR 128
           M+AKSFEGKHN KDK     +VDDD EYETEEEEVGGGG G  SNACNALGYF+NEK+KR
Sbjct: 1   MDAKSFEGKHNSKDKT----VVDDDFEYETEEEEVGGGGGGSNSNACNALGYFDNEKRKR 60

Query: 129 GAAVSGRGRSGGGISSPSCQAHNCATDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFC 188
           GAAVSGRG+SGG +SSPSCQAHNCA DLSEAKRYHRRHKVCEFHSKAA+VMVAGIRQRFC
Sbjct: 61  GAAVSGRGKSGGSVSSPSCQAHNCAADLSEAKRYHRRHKVCEFHSKAAIVMVAGIRQRFC 120

Query: 189 QQCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTSRKGSAP--QSKESHCRQ 248
           QQCSRFHELTEFDEAKRSCRRRLAGHNERRRK+SAE QGESTSRK SAP  QSKESHCRQ
Sbjct: 121 QQCSRFHELTEFDEAKRSCRRRLAGHNERRRKNSAESQGESTSRK-SAPQAQSKESHCRQ 180

Query: 249 LVEDQRSRIQMAPPGSSGYKHLHIR 271
           LVEDQRSRIQMAPPGSSGYKHLHIR
Sbjct: 181 LVEDQRSRIQMAPPGSSGYKHLHIR 200

[Close]

BLAST of Clc11G19310 vs. ExPASy TrEMBL
Match: A0A1S4E4C7 (squamosa promoter-binding protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501851 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 2.1e-80
Identity = 166/204 (81.37%), Postives = 175/204 (85.78%), Query Frame = 0


Query: 69  MEAKSFEGKHNFKDKPYKEGMVDDDLEYETEEEEVGGGGHGGSNACNALGYFENEKKKRG 128
           M+AKSFEGKHN KDK     +VDDD EYETEEEEVGGGG                +K++G
Sbjct: 1   MDAKSFEGKHNSKDKT----VVDDDFEYETEEEEVGGGG---------------GEKEKG 60

Query: 129 AAVSGRGRSGGGISSPSCQAHNCATDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 188
           AAVSGRG+SGG +SSPSCQAHNCA DLSEAKRYHRRHKVCEFHSKAA+VMVAGIRQRFCQ
Sbjct: 61  AAVSGRGKSGGSVSSPSCQAHNCAADLSEAKRYHRRHKVCEFHSKAAIVMVAGIRQRFCQ 120

Query: 189 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTSRKGSAP--QSKESHCRQL 248
           QCSRFHELTEFDEAKRSCRRRLAGHNERRRK+SAE QGESTSRK SAP  QSKESHCRQL
Sbjct: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKNSAESQGESTSRK-SAPQAQSKESHCRQL 180

Query: 249 VEDQRSRIQMAPPGSSGYKHLHIR 271
           VEDQRSRIQMAPPGSSGYKHLHIR
Sbjct: 181 VEDQRSRIQMAPPGSSGYKHLHIR 184

[Close]

BLAST of Clc11G19310 vs. TAIR 10
Match: AT1G53160.2 (squamosa promoter binding protein-like 4 )

HSP 1 Score: 142.9 bits (359), Expect = 3.8e-34
Identity = 92/204 (45.10%), Postives = 115/204 (56.37%), Query Frame = 0


Query: 69  MEAKSFEGKHNFKDKPYKEGMVDDDLEYETEEEEVGGGGHGGSNACNALGYFENEKKKRG 128
           ME K  +G+   K K Y   +V++D+E +T+EEE  G                     R 
Sbjct: 1   MEGKRSQGQGYMKKKSY---LVEEDMETDTDEEEEVG---------------------RD 60

Query: 129 AAVSGRGRSGGGISSPSCQAHNCATDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 188
                RG    G S   CQ   C  D+ EAK YHRRHKVCE H+KA+ V ++G+ QRFCQ
Sbjct: 61  RVRGSRGSINRGGSLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQ 120

Query: 189 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAE-CQGESTSRKGSAPQSKESHCRQLV 248
           QCSRFH+L EFDEAKRSCRRRLAGHNERRRKSS E   GE + R+G   Q        + 
Sbjct: 121 QCSRFHDLQEFDEAKRSCRRRLAGHNERRRKSSGESTYGEGSGRRGINGQV------VMQ 174

Query: 249 EDQRSRIQMA-PPGSSGYKHLHIR 271
             +RSR++M  P  +S +K   IR
Sbjct: 181 NQERSRVEMTLPMPNSSFKRPQIR 174

[Close]

BLAST of Clc11G19310 vs. TAIR 10
Match: AT1G53160.1 (squamosa promoter binding protein-like 4 )

HSP 1 Score: 142.9 bits (359), Expect = 3.8e-34
Identity = 92/204 (45.10%), Postives = 115/204 (56.37%), Query Frame = 0


Query: 69  MEAKSFEGKHNFKDKPYKEGMVDDDLEYETEEEEVGGGGHGGSNACNALGYFENEKKKRG 128
           ME K  +G+   K K Y   +V++D+E +T+EEE  G                     R 
Sbjct: 1   MEGKRSQGQGYMKKKSY---LVEEDMETDTDEEEEVG---------------------RD 60

Query: 129 AAVSGRGRSGGGISSPSCQAHNCATDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 188
                RG    G S   CQ   C  D+ EAK YHRRHKVCE H+KA+ V ++G+ QRFCQ
Sbjct: 61  RVRGSRGSINRGGSLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQ 120

Query: 189 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAE-CQGESTSRKGSAPQSKESHCRQLV 248
           QCSRFH+L EFDEAKRSCRRRLAGHNERRRKSS E   GE + R+G   Q        + 
Sbjct: 121 QCSRFHDLQEFDEAKRSCRRRLAGHNERRRKSSGESTYGEGSGRRGINGQV------VMQ 174

Query: 249 EDQRSRIQMA-PPGSSGYKHLHIR 271
             +RSR++M  P  +S +K   IR
Sbjct: 181 NQERSRVEMTLPMPNSSFKRPQIR 174

[Close]

BLAST of Clc11G19310 vs. TAIR 10
Match: AT3G15270.1 (squamosa promoter binding protein-like 5 )

HSP 1 Score: 141.4 bits (355), Expect = 1.1e-33
Identity = 86/202 (42.57%), Postives = 117/202 (57.92%), Query Frame = 0


Query: 69  MEAKSFEGKHNFKDKPYKEGMVDDDLEYETEEEEVGGGGHGGSNACNALGYFENEKKKRG 128
           ME +  + +   KDK     +V++++E   + EE  GG               +E K++ 
Sbjct: 1   MEGQRTQRRGYLKDKATVSNLVEEEMENGMDGEEEDGG---------------DEDKRKK 60

Query: 129 AAVSGRGRSGGGISSPSCQAHNCATDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 188
                RG S   + S  CQ   C  +L+EAK+Y+RRH+VCE H+KA+   VAG+RQRFCQ
Sbjct: 61  VMERVRGPSTDRVPSRLCQVDRCTVNLTEAKQYYRRHRVCEVHAKASAATVAGVRQRFCQ 120

Query: 189 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTSRKGSAPQSKESHCRQLVE 248
           QCSRFHEL EFDEAKRSCRRRLAGHNERRRK S +  GE + R+G + Q  ++  R  V+
Sbjct: 121 QCSRFHELPEFDEAKRSCRRRLAGHNERRRKISGDSFGEGSGRRGFSGQLIQTQERNRVD 180

Query: 249 DQRSRIQMAPPGSSGYKHLHIR 271
                 +  P  +S +K   IR
Sbjct: 181 ------RKLPMTNSSFKRPQIR 181

[Close]

BLAST of Clc11G19310 vs. TAIR 10
Match: AT2G33810.1 (squamosa promoter binding protein-like 3 )

HSP 1 Score: 131.0 bits (328), Expect = 1.5e-30
Identity = 74/157 (47.13%), Postives = 99/157 (63.06%), Query Frame = 0


Query: 67  LAMEAKSFEGKHNFKDKPYKEGMVDDDLEYETEEEEVGGGGHGGSNACNALGYFENEKKK 126
           ++M     EGK + ++   +E   ++  + +T EEE             AL     EKK+
Sbjct: 1   MSMRRSKAEGKRSLRELSEEEEEEEETEDEDTFEEE------------EAL-----EKKQ 60

Query: 127 RGAAVSGRGRSGGGISSPSCQAHNCATDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRF 186
           +G A S         SS  CQ  +C  D+S+AK+YH+RHKVC+FH+KA  V ++G+ QRF
Sbjct: 61  KGKATS---------SSGVCQVESCTADMSKAKQYHKRHKVCQFHAKAPHVRISGLHQRF 120

Query: 187 CQQCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAE 224
           CQQCSRFH L+EFDEAKRSCRRRLAGHNERRRKS+ +
Sbjct: 121 CQQCSRFHALSEFDEAKRSCRRRLAGHNERRRKSTTD 131

[Close]

BLAST of Clc11G19310 vs. TAIR 10
Match: AT3G60030.1 (squamosa promoter-binding protein-like 12 )

HSP 1 Score: 126.3 bits (316), Expect = 3.7e-29
Identity = 67/109 (61.47%), Postives = 76/109 (69.72%), Query Frame = 0


Query: 128 GAAVSGRG----RSGGGISSPS--CQAHNCATDLSEAKRYHRRHKVCEFHSKAAVVMVAG 187
           G  + G G    + GGGI S +  CQ  NC  DLS+ K YHRRHKVCE HSKA   +V G
Sbjct: 103 GNNIEGNGVKKTKLGGGIPSRAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGG 162

Query: 188 IRQRFCQQCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTS 231
           I QRFCQQCSRFH L EFDE KRSCRRRLAGHN+RRRK++ +  G  TS
Sbjct: 163 IMQRFCQQCSRFHVLEEFDEGKRSCRRRLAGHNKRRRKANPDTIGNGTS 211

The following BLAST results are available for this feature:

BLAST of Clc11G19310 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024822.1	1.5e-109	86.72	Squamosa promoter-binding-like protein 5, partial [Cucurbita argyrosperma subsp....	[more]
XP_038898687.1	3.7e-100	94.06	squamosa promoter-binding-like protein 3 [Benincasa hispida]	[more]
XP_022937043.1	6.3e-100	90.59	squamosa promoter-binding protein 1-like [Cucurbita moschata]	[more]
XP_023536105.1	8.3e-100	90.59	squamosa promoter-binding protein 1-like [Cucurbita pepo subsp. pepo]	[more]
KAG6591949.1	4.5e-98	89.60	Squamosa promoter-binding-like protein 5, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of Clc11G19310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6Z461	3.7e-34	61.42	Squamosa promoter-binding-like protein 13 OS=Oryza sativa subsp. japonica OX=399...	[more]
Q9S7A9	5.3e-33	45.10	Squamosa promoter-binding-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=SPL4...	[more]
Q9S758	1.5e-32	42.57	Squamosa promoter-binding-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=SPL5...	[more]
Q38741	1.3e-31	68.32	Squamosa promoter-binding protein 1 OS=Antirrhinum majus OX=4151 GN=SBP1 PE=2 SV...	[more]
P93015	2.1e-29	47.13	Squamosa promoter-binding-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=SPL3...	[more]

BLAST of Clc11G19310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FEY0	3.1e-100	90.59	squamosa promoter-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1IJV6	8.3e-98	89.11	squamosa promoter-binding protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A0A0L3D9	6.6e-95	89.81	Squamosa promoter-binding protein OS=Cucumis sativus OX=3659 GN=Csa_4G631590 PE=...	[more]
A0A5D3DWS3	2.6e-91	88.29	Squamosa promoter-binding protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S4E4C7	2.1e-80	81.37	squamosa promoter-binding protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501851...	[more]

BLAST of Clc11G19310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G53160.2	3.8e-34	45.10	squamosa promoter binding protein-like 4	[more]
AT1G53160.1	3.8e-34	45.10	squamosa promoter binding protein-like 4	[more]
AT3G15270.1	1.1e-33	42.57	squamosa promoter binding protein-like 5	[more]
AT2G33810.1	1.5e-30	47.13	squamosa promoter binding protein-like 3	[more]
AT3G60030.1	3.7e-29	61.47	squamosa promoter-binding protein-like 12	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036893	SBP domain superfamily	GENE3D	4.10.1100.10		coord: 136..207 e-value: 2.1E-32 score: 113.0
IPR036893	SBP domain superfamily	SUPERFAMILY	103612	SBT domain	coord: 144..223
IPR004333	SBP domain	PFAM	PF03110	SBP	coord: 146..219 e-value: 4.2E-31 score: 107.1
IPR004333	SBP domain	PROSITE	PS51141	ZF_SBP	coord: 143..220 score: 32.214062
None	No IPR available	PIRSR	PIRSR037575-1	PIRSR037575-1	coord: 136..221 e-value: 7.3E-46 score: 152.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 211..270
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 226..241
None	No IPR available	PANTHER	PTHR31251:SF149	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN	coord: 76..270
IPR044817	Squamosa promoter-binding-like protein	PANTHER	PTHR31251	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4	coord: 76..270

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G19310.2	Clc11G19310.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding