Clc11G19250 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G19250
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	PRA1 family protein
Location	ClcChr11: 29706199 .. 29708767 (+)
RNA-Seq Expression	Clc11G19250
Synteny	Clc11G19250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGATTAATTTGATTGGCGGGACGGGAAAAAGCATCACCCACCTCCCATCCATCTCTCTACAACAAAACAAACACTAACAATCTCAAAACAACAATCTTCAACCACAAGGCAATTGCAATCAGCCTTTATATATAACCCTTTTGTCTCATTTGATTCTGAATTCTTGTTTGTGTTGTTGCGATTATAGGAATGAGTTTCTCATCCAACCCACTCTCCCTCAGCGTTCCAGACACCGCCTTCGATTCATGGCTTCGCGATTCCGGTTACCTTGAAATTCTCGATCAGCGGACCTCTGACCTCCACCGCCATTCCTCTGCCACCGCAGCCGCTGCCCCCACCAGACCCATCCCTGCCGCTGCAGCTCCCTTGGCCACAGGTTTTTTCTTCTCCTTCTTCTCTCGCATCGGGATCCTTCTCTCCATTTTTACTCTAAACCCCTTTGCCAAGCTCTCTGCTGCTGATTTTTCTGGGCCGACCCCTTCCTGGACTTCTGGGTTTGTTGGGTCTTTCGAGTCGTACTCGTTTCCTTCGTCGCCGGCTCAAGCTCGTCTTAGAGTCCACGAGAACGCCAAACGCTATGCTCGCAATTACGCGTCCCTATTTGTTCTCTTCTTTGTCTGCACGCTGTACGTTCTACTCTTTCTCTCTTGTTATTTGTGTTTATTGATGGGGTTTGTGCTGGAGATTCTGTTCTTGAAGTTGAAGTTGTTGTTTTTCATGGGGTTTGCGAATTGGGTTCTGTTTGGTTTTACTTGAAGGGGAGGGGAAGAGTACAATAAAAGCCATGAAAAAATCGATTTGTTAAAGCGTTTTGATTAAGATATGATGATGGGTTTAGTGATTTGATTTGACTTTTGAAAGCTCATGGGGTTAAAAACTTTTGGAGCCTACTCAAATGCTAATCCCAATGTCAAACATATAGAAAGAATTACGAGCATTCCTTCTCAATTCTGTGCAATGGAAATTCCGACTTGCATTTAACATATTTCAAATGGGTGGATCAAATGAAACTATCAGGCAGTTGCATTTTTGTTGTTATGTATTCCTTTTGTGGATTCAAGTGGTTTGACTGAAACAGAGAACCACTCTTATTATTGTTGGTCATTAAACTAGAACACTGTTCTATTACTACTTTTTGATATTCATGTTCCTTTGTTTGGGATAGCCCGACCTTTATTTACCAATTTCGTGTTTCATAAGTTTAAATTCTCTTGTGGATGATTTCAGGTACCAGATGCCTCTTGCCCTCCTTGGATTGATATCATGTTTAGCACTTTGGGACATTGTTAAATTTTGTGGTGATAGGTGGGGATTAGACAAATATCCAGTTCTTTGGCAGTGTTTGGTTCGCATTGCTCAATGTGGTATGTTACTGACGTTTTAAAACCTTGTTTATTTACAGACCTGAGAAGTTCCTCCCAATTCTTCCCTTTGAACATGTATTAATTAATTGGTAACCTGTTTCGTTGTTGCATTTTCACGTAGAGAACTTCAGTGGAAAAACGATATACACCTATTTTTGACATCGGTAGGATTACTATAGCATAGATCACCAGTGTAGATGTGGAGTTCGGATCTCAAATTAAAAGCATACCGTTGGATTTCTCTGTTTTTTACTAGCATTTTCTTATGCAGTTACTGAGATATACACTGTAATTTCTGCTTGTTGAATGGTAATTGTTTTGCCTGTTCCATGTGGTTAAAATTATAAGCCCTAAGGCTATTGTTTTCTCAATTAAGATGACTCAGAACTTCAGCTCAGTTGTCCTGAGTTCTGGAAGCCAATGTAGCAAAGCATAATGCCTTTGATGGTGCAAAAGTTTTACTGAGTACTACAAATGCTATTTGGAATCTTCGGGATTTTTTTTCAAAACCCTTCTTTTGGAAACAGCTTTGTGGAATTATTGGACGTAAAATTCTTTCTACTGGATCATGCTATATGGACTTATCAATCATTTCCATGTAGCGGACCATGCATGAGCTCACAATTTTTTGAACTGCTATTGTTATTTGCCTAGTATCTTATTTAACCCATTTTTTTCTTCCAAATACTTAACAATATAATGTTTGCAGTGACTGTCATCATCCTTTTATTTTCCAACTTTCAAATGGCAATCTTCTGTGCCCTTGGCATTGGATATACAGGTGACTCCAGAATTGTAGGCCATGTTATAGAGTTCATTATATCAGTTGTTCTTATCATTTGAAATCTTGGCAGGCATGATTTTGCATGCTGCATTTCGGAAGCTAACTCTCACCAAGCCCCCATCTACAGTAGGTCGGAGATAGCCAGTTACAGGCAACGATATTCATCCTCCTATATGTAAGTTATGTTCGAGCAAGCTTACTGCAAAAGTTACCAACATCTGATTCTGTGATGAGATGAAAAGTGCTGGTAATGCTGATTGCTATACCTTTGCATACTGCTTTCTTGAAACTTGAAAGCATGACTGATGGACCTCAGAAGGCACCGTGCCTTTGCTTGAATATTCATTTTATGGCATGGGGCTCTCTGACCATCCTATTGCCTAAGAGTTTCATGGCTTCATCTTCCTGTGTTAGAGGCTAG

mRNA sequence

TGATTAATTTGATTGGCGGGACGGGAAAAAGCATCACCCACCTCCCATCCATCTCTCTACAACAAAACAAACACTAACAATCTCAAAACAACAATCTTCAACCACAAGGAATGAGTTTCTCATCCAACCCACTCTCCCTCAGCGTTCCAGACACCGCCTTCGATTCATGGCTTCGCGATTCCGGTTACCTTGAAATTCTCGATCAGCGGACCTCTGACCTCCACCGCCATTCCTCTGCCACCGCAGCCGCTGCCCCCACCAGACCCATCCCTGCCGCTGCAGCTCCCTTGGCCACAGGTTTTTTCTTCTCCTTCTTCTCTCGCATCGGGATCCTTCTCTCCATTTTTACTCTAAACCCCTTTGCCAAGCTCTCTGCTGCTGATTTTTCTGGGCCGACCCCTTCCTGGACTTCTGGGTTTGTTGGGTCTTTCGAGTCGTACTCGTTTCCTTCGTCGCCGGCTCAAGCTCGTCTTAGAGTCCACGAGAACGCCAAACGCTATGCTCGCAATTACGCGTCCCTATTTGTTCTCTTCTTTGTCTGCACGCTGTACCAGATGCCTCTTGCCCTCCTTGGATTGATATCATGTTTAGCACTTTGGGACATTGTTAAATTTTGTGGTGATAGGTGGGGATTAGACAAATATCCAGTTCTTTGGCAGTGTTTGGTTCGCATTGCTCAATGTGGTATGTTACTGACGCATGATTTTGCATGCTGCATTTCGGAAGCTAACTCTCACCAAGCCCCCATCTACATGCTGGTAATGCTGATTGCTATACCTTTGCATACTGCTTTCTTGAAACTTGAAAGCATGACTGATGGACCTCAGAAGGCACCGTGCCTTTGCTTGAATATTCATTTTATGGCATGGGGCTCTCTGACCATCCTATTGCCTAAGAGTTTCATGGCTTCATCTTCCTGTGTTAGAGGCTAG

Coding sequence (CDS)

ATGAGTTTCTCATCCAACCCACTCTCCCTCAGCGTTCCAGACACCGCCTTCGATTCATGGCTTCGCGATTCCGGTTACCTTGAAATTCTCGATCAGCGGACCTCTGACCTCCACCGCCATTCCTCTGCCACCGCAGCCGCTGCCCCCACCAGACCCATCCCTGCCGCTGCAGCTCCCTTGGCCACAGGTTTTTTCTTCTCCTTCTTCTCTCGCATCGGGATCCTTCTCTCCATTTTTACTCTAAACCCCTTTGCCAAGCTCTCTGCTGCTGATTTTTCTGGGCCGACCCCTTCCTGGACTTCTGGGTTTGTTGGGTCTTTCGAGTCGTACTCGTTTCCTTCGTCGCCGGCTCAAGCTCGTCTTAGAGTCCACGAGAACGCCAAACGCTATGCTCGCAATTACGCGTCCCTATTTGTTCTCTTCTTTGTCTGCACGCTGTACCAGATGCCTCTTGCCCTCCTTGGATTGATATCATGTTTAGCACTTTGGGACATTGTTAAATTTTGTGGTGATAGGTGGGGATTAGACAAATATCCAGTTCTTTGGCAGTGTTTGGTTCGCATTGCTCAATGTGGTATGTTACTGACGCATGATTTTGCATGCTGCATTTCGGAAGCTAACTCTCACCAAGCCCCCATCTACATGCTGGTAATGCTGATTGCTATACCTTTGCATACTGCTTTCTTGAAACTTGAAAGCATGACTGATGGACCTCAGAAGGCACCGTGCCTTTGCTTGAATATTCATTTTATGGCATGGGGCTCTCTGACCATCCTATTGCCTAAGAGTTTCATGGCTTCATCTTCCTGTGTTAGAGGCTAG

Protein sequence

MSFSSNPLSLSVPDTAFDSWLRDSGYLEILDQRTSDLHRHSSATAAAAPTRPIPAAAAPLATGFFFSFFSRIGILLSIFTLNPFAKLSAADFSGPTPSWTSGFVGSFESYSFPSSPAQARLRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCGDRWGLDKYPVLWQCLVRIAQCGMLLTHDFACCISEANSHQAPIYMLVMLIAIPLHTAFLKLESMTDGPQKAPCLCLNIHFMAWGSLTILLPKSFMASSSCVRG

Homology

[Close]

BLAST of Clc11G19250 vs. NCBI nr
Match: KAG6591944.1 (PRA1 family protein H, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024817.1 PRA1 family protein H [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 364.4 bits (934), Expect = 8.7e-97
Identity = 190/233 (81.55%), Postives = 201/233 (86.27%), Query Frame = 0


Query: 1   MSFSSNPLSLSVPDTAFDSWLRDSGYLEILDQRTSDLHRHSSATAAAAPTRPIPAAAAPL 60
           MSFSSNPLSLSVPD AFDSWLRDSGYLEILDQRTSDLHRHSSATAAAAPTRP P A APL
Sbjct: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSATAAAAPTRPTPIAVAPL 60

Query: 61  ATGFFFSFFSRIGILLSIFTLNPFAKLSAADFSGPTPSWTSGFVGSFESYSFPSSPAQAR 120
           ATGFF SFFSRIG LLS+FTLNPFAKLSAADF+GPTPSWTSGFVG FESYSFPSSPAQAR
Sbjct: 61  ATGFFISFFSRIGTLLSVFTLNPFAKLSAADFAGPTPSWTSGFVGFFESYSFPSSPAQAR 120

Query: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCGDRWGLDKYPV 180
           LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGL+SCLALWDIVKFCGDRWGLDKYPV
Sbjct: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLVSCLALWDIVKFCGDRWGLDKYPV 180

Query: 181 LWQCLVRIAQCGMLLTHDFACCISEANSHQAPIY--MLVMLIAIPLHTAFLKL 232
           +WQCLVRIAQC  ++   F       ++ Q  I+  + V    + LH AF KL
Sbjct: 181 VWQCLVRIAQCVTVIILLF-------SNFQMAIFCALGVGYTGMILHAAFRKL 226

[Close]

BLAST of Clc11G19250 vs. NCBI nr
Match: XP_023535020.1 (PRA1 family protein H-like [Cucurbita pepo subsp. pepo] >XP_023535022.1 PRA1 family protein H-like [Cucurbita pepo subsp. pepo] >XP_023535023.1 PRA1 family protein H-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 364.4 bits (934), Expect = 8.7e-97
Identity = 189/233 (81.12%), Postives = 200/233 (85.84%), Query Frame = 0


Query: 1   MSFSSNPLSLSVPDTAFDSWLRDSGYLEILDQRTSDLHRHSSATAAAAPTRPIPAAAAPL 60
           MSFSSNPLSLSVPD AFDSWLRDSGYLEILDQRTSDLHRHSSATAA APTRP P A APL
Sbjct: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSATAATAPTRPTPTAVAPL 60

Query: 61  ATGFFFSFFSRIGILLSIFTLNPFAKLSAADFSGPTPSWTSGFVGSFESYSFPSSPAQAR 120
           ATGFF SFFSRIG LLS+FTLNPFAKLSAADF+GPTPSWTSGFVG FESYSFPSSPAQAR
Sbjct: 61  ATGFFISFFSRIGTLLSVFTLNPFAKLSAADFAGPTPSWTSGFVGFFESYSFPSSPAQAR 120

Query: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCGDRWGLDKYPV 180
           LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGL+SCLALWDIVKFCGDRWGLDKYPV
Sbjct: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLVSCLALWDIVKFCGDRWGLDKYPV 180

Query: 181 LWQCLVRIAQCGMLLTHDFACCISEANSHQAPIY--MLVMLIAIPLHTAFLKL 232
           +WQCLVRIAQC  ++   F       ++ Q  I+  + V    + LH AF KL
Sbjct: 181 VWQCLVRIAQCVTVIILLF-------SNFQMAIFCALAVGYTGMILHAAFRKL 226

[Close]

BLAST of Clc11G19250 vs. NCBI nr
Match: XP_038898448.1 (PRA1 family protein H [Benincasa hispida])

HSP 1 Score: 363.2 bits (931), Expect = 1.9e-96
Identity = 181/191 (94.76%), Postives = 183/191 (95.81%), Query Frame = 0


Query: 1   MSFSSNPLSLSVPDTAFDSWLRDSGYLEILDQRTSDLHRHSSATAAAAPTRPIPAAAAPL 60
           MSFS NPLSLSVPD AFDSWLRDSGYLEILDQRTSDLHRHSSA AAAAPTRP PAAAAPL
Sbjct: 1   MSFSPNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSAPAAAAPTRPTPAAAAPL 60

Query: 61  ATGFFFSFFSRIGILLSIFTLNPFAKLSAADFSGPTPSWTSGFVGSFESYSFPSSPAQAR 120
           ATGFF S FSR+G LLSIFTLNPFAKLSAADFSGPTPSWTSGFVG FESYSFPSSPAQAR
Sbjct: 61  ATGFFISLFSRMGTLLSIFTLNPFAKLSAADFSGPTPSWTSGFVGFFESYSFPSSPAQAR 120

Query: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCGDRWGLDKYPV 180
           LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWD+VKFCGDRWGLDKYPV
Sbjct: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDVVKFCGDRWGLDKYPV 180

Query: 181 LWQCLVRIAQC 192
           LWQCLVRIAQC
Sbjct: 181 LWQCLVRIAQC 191

[Close]

BLAST of Clc11G19250 vs. NCBI nr
Match: XP_022935725.1 (PRA1 family protein H-like [Cucurbita moschata] >XP_022935726.1 PRA1 family protein H-like [Cucurbita moschata] >XP_022935727.1 PRA1 family protein H-like [Cucurbita moschata] >XP_022935728.1 PRA1 family protein H-like [Cucurbita moschata])

HSP 1 Score: 361.3 bits (926), Expect = 7.3e-96
Identity = 188/233 (80.69%), Postives = 200/233 (85.84%), Query Frame = 0


Query: 1   MSFSSNPLSLSVPDTAFDSWLRDSGYLEILDQRTSDLHRHSSATAAAAPTRPIPAAAAPL 60
           MSFSSNPLSLSVPD AFDSWLRDSGYLEILDQRTSDLHRHSSATAA APTRP P A APL
Sbjct: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSATAATAPTRPTPIAVAPL 60

Query: 61  ATGFFFSFFSRIGILLSIFTLNPFAKLSAADFSGPTPSWTSGFVGSFESYSFPSSPAQAR 120
           ATGFF SFFSRIG LLS+FTLNPFAKLSAADF+GPTPSWTSGFVG FESYSFPSSPAQAR
Sbjct: 61  ATGFFISFFSRIGTLLSVFTLNPFAKLSAADFAGPTPSWTSGFVGFFESYSFPSSPAQAR 120

Query: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCGDRWGLDKYPV 180
           LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGL+SCLALWDIVKFCGDRWGLD+YPV
Sbjct: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLVSCLALWDIVKFCGDRWGLDQYPV 180

Query: 181 LWQCLVRIAQCGMLLTHDFACCISEANSHQAPIY--MLVMLIAIPLHTAFLKL 232
           +WQCLVRIAQC  ++   F       ++ Q  I+  + V    + LH AF KL
Sbjct: 181 VWQCLVRIAQCVTVIILLF-------SNFQMAIFCALGVGYTGMILHAAFRKL 226

[Close]

BLAST of Clc11G19250 vs. NCBI nr
Match: XP_022976569.1 (PRA1 family protein H-like [Cucurbita maxima] >XP_022976570.1 PRA1 family protein H-like [Cucurbita maxima] >XP_022976572.1 PRA1 family protein H-like [Cucurbita maxima] >XP_022976573.1 PRA1 family protein H-like [Cucurbita maxima])

HSP 1 Score: 360.9 bits (925), Expect = 9.6e-96
Identity = 188/233 (80.69%), Postives = 199/233 (85.41%), Query Frame = 0


Query: 1   MSFSSNPLSLSVPDTAFDSWLRDSGYLEILDQRTSDLHRHSSATAAAAPTRPIPAAAAPL 60
           MSFSSNPLSLSVPD AFDSWLRDSGYLEILDQRTSDLHRHSSATAA APTRP P A APL
Sbjct: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSATAATAPTRPTPTAVAPL 60

Query: 61  ATGFFFSFFSRIGILLSIFTLNPFAKLSAADFSGPTPSWTSGFVGSFESYSFPSSPAQAR 120
           ATGFF SFFSRIG LLS+FTLNPFAKLSAADF+GPTPSWTSGFVG FESYSFPSSPAQAR
Sbjct: 61  ATGFFISFFSRIGTLLSVFTLNPFAKLSAADFAGPTPSWTSGFVGFFESYSFPSSPAQAR 120

Query: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCGDRWGLDKYPV 180
           LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGL+SCLALWDIVKFCGDRW LDKYPV
Sbjct: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLVSCLALWDIVKFCGDRWALDKYPV 180

Query: 181 LWQCLVRIAQCGMLLTHDFACCISEANSHQAPIY--MLVMLIAIPLHTAFLKL 232
           +WQCLVRIAQC  ++   F       ++ Q  I+  + V    + LH AF KL
Sbjct: 181 VWQCLVRIAQCVTVIILLF-------SNFQMAIFCALGVGYTGMILHAAFRKL 226

[Close]

BLAST of Clc11G19250 vs. ExPASy Swiss-Prot
Match: Q8LFP1 (PRA1 family protein H OS=Arabidopsis thaliana OX=3702 GN=PRA1H PE=2 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 3.5e-56
Identity = 120/247 (48.58%), Postives = 161/247 (65.18%), Query Frame = 0


Query: 1   MSFSSNPLSLSVPDTAFDSWLRDSGYLEILDQRTSDLHRHSSATAAAAPTRPIPAAA--- 60
           M+FS NPLSLSVPD AF+SWLRDSGYLE+LD RTS     +S++A+ + +    +AA   
Sbjct: 1   MAFSPNPLSLSVPDPAFESWLRDSGYLELLDHRTSAAAAAASSSASVSSSAAATSAASDD 60

Query: 61  --APLATGFFFSFFSRIGILLSIFTLNPFAKLSAADFSGPTPSWTSGFVGSFESYSFPSS 120
             + +  GFF S  SR+  + S+ T+NPF+KLSA DFSG T  WT+GF+G+ +SYSFPSS
Sbjct: 61  VVSSITGGFFASLLSRLVTVSSLLTINPFSKLSADDFSGDTTPWTTGFIGNCDSYSFPSS 120

Query: 121 PAQARLRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCGDRWGL 180
             QAR+RVHEN KR+ARNYA+LF++FF C LYQMPLAL+GL+  LALW++ K+C D+W  
Sbjct: 121 SQQARMRVHENIKRFARNYATLFIVFFACALYQMPLALVGLLGSLALWELFKYCSDKWKF 180

Query: 181 DKYPVLWQCLVRIAQCGMLLTHDFACCISEANSHQAPIYMLVMLIAIPLHTAFLKLESMT 240
           D++P + +  + I QC   +   F        S  A  Y +++     LH  F KL    
Sbjct: 181 DRHPSMRKLSIGIGQCATAVLLTFLNVQMALFSALAISYSVMI-----LHAGFRKLT--- 237

Query: 241 DGPQKAP 243
             P K P
Sbjct: 241 --PSKKP 237

[Close]

BLAST of Clc11G19250 vs. ExPASy TrEMBL
Match: A0A6J1F5I6 (PRA1 family protein OS=Cucurbita moschata OX=3662 GN=LOC111442551 PE=3 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 3.5e-96
Identity = 188/233 (80.69%), Postives = 200/233 (85.84%), Query Frame = 0


Query: 1   MSFSSNPLSLSVPDTAFDSWLRDSGYLEILDQRTSDLHRHSSATAAAAPTRPIPAAAAPL 60
           MSFSSNPLSLSVPD AFDSWLRDSGYLEILDQRTSDLHRHSSATAA APTRP P A APL
Sbjct: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSATAATAPTRPTPIAVAPL 60

Query: 61  ATGFFFSFFSRIGILLSIFTLNPFAKLSAADFSGPTPSWTSGFVGSFESYSFPSSPAQAR 120
           ATGFF SFFSRIG LLS+FTLNPFAKLSAADF+GPTPSWTSGFVG FESYSFPSSPAQAR
Sbjct: 61  ATGFFISFFSRIGTLLSVFTLNPFAKLSAADFAGPTPSWTSGFVGFFESYSFPSSPAQAR 120

Query: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCGDRWGLDKYPV 180
           LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGL+SCLALWDIVKFCGDRWGLD+YPV
Sbjct: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLVSCLALWDIVKFCGDRWGLDQYPV 180

Query: 181 LWQCLVRIAQCGMLLTHDFACCISEANSHQAPIY--MLVMLIAIPLHTAFLKL 232
           +WQCLVRIAQC  ++   F       ++ Q  I+  + V    + LH AF KL
Sbjct: 181 VWQCLVRIAQCVTVIILLF-------SNFQMAIFCALGVGYTGMILHAAFRKL 226

[Close]

BLAST of Clc11G19250 vs. ExPASy TrEMBL
Match: A0A6J1IMK5 (PRA1 family protein OS=Cucurbita maxima OX=3661 GN=LOC111476927 PE=3 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 4.6e-96
Identity = 188/233 (80.69%), Postives = 199/233 (85.41%), Query Frame = 0


Query: 1   MSFSSNPLSLSVPDTAFDSWLRDSGYLEILDQRTSDLHRHSSATAAAAPTRPIPAAAAPL 60
           MSFSSNPLSLSVPD AFDSWLRDSGYLEILDQRTSDLHRHSSATAA APTRP P A APL
Sbjct: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSATAATAPTRPTPTAVAPL 60

Query: 61  ATGFFFSFFSRIGILLSIFTLNPFAKLSAADFSGPTPSWTSGFVGSFESYSFPSSPAQAR 120
           ATGFF SFFSRIG LLS+FTLNPFAKLSAADF+GPTPSWTSGFVG FESYSFPSSPAQAR
Sbjct: 61  ATGFFISFFSRIGTLLSVFTLNPFAKLSAADFAGPTPSWTSGFVGFFESYSFPSSPAQAR 120

Query: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCGDRWGLDKYPV 180
           LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGL+SCLALWDIVKFCGDRW LDKYPV
Sbjct: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLVSCLALWDIVKFCGDRWALDKYPV 180

Query: 181 LWQCLVRIAQCGMLLTHDFACCISEANSHQAPIY--MLVMLIAIPLHTAFLKL 232
           +WQCLVRIAQC  ++   F       ++ Q  I+  + V    + LH AF KL
Sbjct: 181 VWQCLVRIAQCVTVIILLF-------SNFQMAIFCALGVGYTGMILHAAFRKL 226

[Close]

BLAST of Clc11G19250 vs. ExPASy TrEMBL
Match: A0A1S3CLE4 (PRA1 family protein OS=Cucumis melo OX=3656 GN=LOC103501773 PE=3 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 4.1e-92
Identity = 187/234 (79.91%), Postives = 194/234 (82.91%), Query Frame = 0


Query: 1   MSFSSNPLSLSVPDTAFDSWLRDSGYLEILDQRTSDLHRHSSATAAAAPTRPIPAAAAPL 60
           MSFSSNPLSLSVPD AFDSWLRDSGYLEILDQRTSDLHRHSS   AA PTRP P AAAPL
Sbjct: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSS---AAPPTRPTPTAAAPL 60

Query: 61  ATGFFFSFFSRIGILLSIFTLNPFAKLSAADFSGPTPSWTSGFVGSFESYSFPSSPAQAR 120
           ATGFF S FSRI  LLS+FTLNPF+KLSAADFSGPTPSWTSGFVG FESYSFPSSPAQAR
Sbjct: 61  ATGFFISLFSRIATLLSVFTLNPFSKLSAADFSGPTPSWTSGFVGFFESYSFPSSPAQAR 120

Query: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCGDRWGLDKYPV 180
           LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFC DRWGLDKYPV
Sbjct: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCCDRWGLDKYPV 180

Query: 181 LWQCLVRIAQCG---MLLTHDFACCISEANSHQAPIYMLVMLIAIPLHTAFLKL 232
           LWQCLVRIAQC    +LL  +F   I  A        + +    + LH AF KL
Sbjct: 181 LWQCLVRIAQCATAIILLFSNFQMAIFCA--------LGIGYTGMILHAAFRKL 223

[Close]

BLAST of Clc11G19250 vs. ExPASy TrEMBL
Match: A0A0A0L4P4 (PRA1 family protein OS=Cucumis sativus OX=3659 GN=Csa_4G630550 PE=3 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 4.1e-92
Identity = 185/233 (79.40%), Postives = 194/233 (83.26%), Query Frame = 0


Query: 1   MSFSSNPLSLSVPDTAFDSWLRDSGYLEILDQRTSDLHRHSSATAAAAPTRPIPAAAAPL 60
           MSFSSNPLSLSVPD AFDSWLRDSGYLEILDQRTSDLHRHSS   AA P RP P AAAPL
Sbjct: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSS---AAPPARPTPTAAAPL 60

Query: 61  ATGFFFSFFSRIGILLSIFTLNPFAKLSAADFSGPTPSWTSGFVGSFESYSFPSSPAQAR 120
           ATGFF S FSRI  LLSIFTLNPFAKLSAADFSGPTPSWT+GFVG FESYSFPSSPAQAR
Sbjct: 61  ATGFFISLFSRIATLLSIFTLNPFAKLSAADFSGPTPSWTTGFVGFFESYSFPSSPAQAR 120

Query: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCGDRWGLDKYPV 180
           LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFC DRWGLDKYPV
Sbjct: 121 LRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCCDRWGLDKYPV 180

Query: 181 LWQCLVRIAQCGMLLTHDFACCISEANSHQAPIYMLVML--IAIPLHTAFLKL 232
           LWQCLVRIAQC  ++   F       ++ Q  I+  + +    + LH AF KL
Sbjct: 181 LWQCLVRIAQCATVIILLF-------SNFQMAIFCALGIGYTGMILHAAFRKL 223

[Close]

BLAST of Clc11G19250 vs. ExPASy TrEMBL
Match: A0A6J1FRZ0 (PRA1 family protein OS=Cucurbita moschata OX=3662 GN=LOC111446689 PE=3 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 1.6e-88
Identity = 168/196 (85.71%), Postives = 178/196 (90.82%), Query Frame = 0


Query: 1   MSFSSNPLSLSVPDTAFDSWLRDSGYLEILDQRTSDLHRHSS-ATAAAAPTRPIPAAAAP 60
           MSFS NPLSLSVPD AFDSWLRDSGYLEI+DQRTSD+HRHSS A AAAAP     A   P
Sbjct: 1   MSFSPNPLSLSVPDGAFDSWLRDSGYLEIIDQRTSDVHRHSSAAAAAAAPITSTSAPTTP 60

Query: 61  LATGFFFSFFSRIGILLSIFTLNPFAKLSAADFSGPTPSWTSGFVGSFESYSFPSSPAQA 120
           LATGFF S FSRI  LLSIFTLNPFAKLSAADFSGPTPSWTSGF+GSFESYSFPSSPAQA
Sbjct: 61  LATGFFISLFSRIVTLLSIFTLNPFAKLSAADFSGPTPSWTSGFIGSFESYSFPSSPAQA 120

Query: 121 RLRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCGDRWGLDKYP 180
           RLR HENAKRYARNYASLFVLFFVCTLYQMP+ALLGLISC+ALWD+VKFC +RWGLDKYP
Sbjct: 121 RLRAHENAKRYARNYASLFVLFFVCTLYQMPVALLGLISCMALWDVVKFCCNRWGLDKYP 180

Query: 181 VLWQCLVRIAQCGMLL 196
           V+WQCLVR+AQCGM+L
Sbjct: 181 VVWQCLVRVAQCGMIL 196

[Close]

BLAST of Clc11G19250 vs. TAIR 10
Match: AT4G27540.1 (prenylated RAB acceptor 1.H )

HSP 1 Score: 219.9 bits (559), Expect = 2.5e-57
Identity = 120/247 (48.58%), Postives = 161/247 (65.18%), Query Frame = 0


Query: 1   MSFSSNPLSLSVPDTAFDSWLRDSGYLEILDQRTSDLHRHSSATAAAAPTRPIPAAA--- 60
           M+FS NPLSLSVPD AF+SWLRDSGYLE+LD RTS     +S++A+ + +    +AA   
Sbjct: 1   MAFSPNPLSLSVPDPAFESWLRDSGYLELLDHRTSAAAAAASSSASVSSSAAATSAASDD 60

Query: 61  --APLATGFFFSFFSRIGILLSIFTLNPFAKLSAADFSGPTPSWTSGFVGSFESYSFPSS 120
             + +  GFF S  SR+  + S+ T+NPF+KLSA DFSG T  WT+GF+G+ +SYSFPSS
Sbjct: 61  VVSSITGGFFASLLSRLVTVSSLLTINPFSKLSADDFSGDTTPWTTGFIGNCDSYSFPSS 120

Query: 121 PAQARLRVHENAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCGDRWGL 180
             QAR+RVHEN KR+ARNYA+LF++FF C LYQMPLAL+GL+  LALW++ K+C D+W  
Sbjct: 121 SQQARMRVHENIKRFARNYATLFIVFFACALYQMPLALVGLLGSLALWELFKYCSDKWKF 180

Query: 181 DKYPVLWQCLVRIAQCGMLLTHDFACCISEANSHQAPIYMLVMLIAIPLHTAFLKLESMT 240
           D++P + +  + I QC   +   F        S  A  Y +++     LH  F KL    
Sbjct: 181 DRHPSMRKLSIGIGQCATAVLLTFLNVQMALFSALAISYSVMI-----LHAGFRKLT--- 237

Query: 241 DGPQKAP 243
             P K P
Sbjct: 241 --PSKKP 237

The following BLAST results are available for this feature:

BLAST of Clc11G19250 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6591944.1	8.7e-97	81.55	PRA1 family protein H, partial [Cucurbita argyrosperma subsp. sororia] >KAG70248...	[more]
XP_023535020.1	8.7e-97	81.12	PRA1 family protein H-like [Cucurbita pepo subsp. pepo] >XP_023535022.1 PRA1 fam...	[more]
XP_038898448.1	1.9e-96	94.76	PRA1 family protein H [Benincasa hispida]	[more]
XP_022935725.1	7.3e-96	80.69	PRA1 family protein H-like [Cucurbita moschata] >XP_022935726.1 PRA1 family prot...	[more]
XP_022976569.1	9.6e-96	80.69	PRA1 family protein H-like [Cucurbita maxima] >XP_022976570.1 PRA1 family protei...	[more]

BLAST of Clc11G19250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LFP1	3.5e-56	48.58	PRA1 family protein H OS=Arabidopsis thaliana OX=3702 GN=PRA1H PE=2 SV=1	[more]

BLAST of Clc11G19250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F5I6	3.5e-96	80.69	PRA1 family protein OS=Cucurbita moschata OX=3662 GN=LOC111442551 PE=3 SV=1	[more]
A0A6J1IMK5	4.6e-96	80.69	PRA1 family protein OS=Cucurbita maxima OX=3661 GN=LOC111476927 PE=3 SV=1	[more]
A0A1S3CLE4	4.1e-92	79.91	PRA1 family protein OS=Cucumis melo OX=3656 GN=LOC103501773 PE=3 SV=1	[more]
A0A0A0L4P4	4.1e-92	79.40	PRA1 family protein OS=Cucumis sativus OX=3659 GN=Csa_4G630550 PE=3 SV=1	[more]
A0A6J1FRZ0	1.6e-88	85.71	PRA1 family protein OS=Cucurbita moschata OX=3662 GN=LOC111446689 PE=3 SV=1	[more]

BLAST of Clc11G19250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G27540.1	2.5e-57	48.58	prenylated RAB acceptor 1.H	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004895	Prenylated rab acceptor PRA1	PFAM	PF03208	PRA1	coord: 103..170 e-value: 1.1E-8 score: 34.8
IPR004895	Prenylated rab acceptor PRA1	PANTHER	PTHR19317	PRENYLATED RAB ACCEPTOR 1-RELATED	coord: 1..235
None	No IPR available	PANTHER	PTHR19317:SF1	PRA1 FAMILY PROTEIN H	coord: 1..235

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G19250.2	Clc11G19250.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane