Clc11G19100 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G19100
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	RNA exonuclease 4
Location	ClcChr11: 29591214 .. 29595672 (-)
RNA-Seq Expression	Clc11G19100
Synteny	Clc11G19100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGCACATAAAATTTAACACCTTTCAAATTTTAAGTTTCAAATACTATTTGATAAACTTGTAAATTTTAAAACGATGAAAAATTAGAAATTAGAACCTCCTCCTTCCTCTATTTTCCGGTTTAGGGCCACCGGGCGAAGACGGCGGAAGTGGACGGCTATTAGTAGTATGTAAATCGTGGGAGTTGGGCGTCAAAGTGGGAGCTTCAACACTATGGAATCTCAGCTCAAGAAGACCCCTAAACCCAAATTGCTTAACCCCAATTGGGCGCTACTCCAACAAGTACTGCTTCTTCTTCTTCCCTCCATTCCTCGTTTTTCCCTCTCTTTCTATCACTGATTTCTATCTATTTTGATCCTGCAGCAGCTGAAACCCCATGGTTCAAACCATTCAAGGTCCTCTACTGTTCCGAAATCCGAAGCTTCATCAAAAACCCTTTTAGGTAATAGTTCTTCCACTACCCCTCGGTTCAAAGTTGCTTTCCTGCTTTTGGAGGATGAATGGATATCGTAGTTTCCCATTTACAGAGCATTATGGAAGTTTATGCTCTTGTATGAGCCTCTCTAATTCAAACGCAGAAAGTGAAAATTGGGTTTTGCTGCAATCGTCACTTGAAATAGTGTGTGCTTTTGATTTTAGGAACTTTTCTAGTTATTTTATTGGGAAGTTCTTAGTTCACGAAATATTTAGAATAACCAAACAAGCTTTGTTTTGGTTTCATTCTAATGAATCCACGTAGTTTTTGTGGTCATAATGTAGTGATTTAGTTAACTTGTGCGACCTGGTTTTGCAGGGAAACGCAAGGAAAGATCTGATGTGGAGTCAAATTATTCCCAGAAGAATATTCTCATTCCGGTGAATGATGATTTTAGGTAATCTTTTAGAATTATTTTAGATTACTTGAAGAACATAGTAAGTCGTTGTCTATTACTTTAGATGCAAGTTGAAAATATTTATAATTGTATAATCACCAACTATTCGCATGGCATTGGTAAATAAAAGAGAGAGTTAATTATAATTCAATCCTAGACTATCATAAGTAGCAAGTTCATGTGACTAAACTGTGCAATAAAATTTTGTATGAACTCAGAACAAAACAAATCAAGTTCTATGTGGCCTCTAATCCCGTAGTATTGGCAAATGCCAAATCTTGAAATACATTATAGTACAACATCCTCTCATAGTTCAAAGATTTAAGTTCTTCACTTCTGACAAAAAAATGCTTGAAGTTACTTGAATCCCTGTTTTTGTTATCTTTGCCAAAAATCGAATTTTATACTACAAATCCCGATTCCCCCTCAAAAGAAAAAAGGCCTCTTATTTCAACTTGCCTGAAGAAACATGTAGAGTAAATAGTTGGGTTCCTTTGGAAGTTTAGCTCAAATGACTACTAACTGACTTCATGCTTTTTTGCCAGTGTTACAGATGAAGTAGCCATGGATTGTGAAATGGTTGGCGTGGGTCAAGGTAACAAAAGTGCCCTTGGACGAGTTACACTGGTATTCATTCCTTTTTTAATTTGATAACCTGTTATTCATATCCATGGGTTTGGTTTTTTAGCATACACACCCTCTTTACACCTCCTTCAATCAGGAGAGAGGACGGGTTATTATTATTATTATTATTATTATTTTGGAGGGGTTGATAGTTCAACTTTCACTTTCATAAGTAGCAGGTTCTTGGAGCACCAAAGAGTGACGTTTACCTTGTCTATATTATTAGTTGCTAACAGTACTGCCAATTAATGGCAGGTAAACAAATGGGGGAATGTTATATACGATGAGTTTGTACGCCCTATAGAGCGCGTGGTTGACTTTCGGACTCAAATTAGTGGCATAAGACCCTGCGACTTGAAGAAAGGTGACCTTAGTTTTCCTTTTTTCTTTTAATATGTATATTTTGTTGTTTACTCATATTTCTACAATAATACTCAGCCACCTAACATCTTTACCTAACAAAATGCATTTTAGGGAAAAGATTGGAGTTATATGTTTCCTTGAAGAGTTTTAACGATGTTGAAGACAATAATTTCTAGCTATGTACAATTACACAATTACATCTGCTAGAAAAGTAATGCTATGTACTAACTACTAAGATATAAGTGGAATATTGAGTAGGTAGATTAATGAAAAGTAAACTTAGGGTGTACTTTGCCACATTCTTTCAACAAGATGGTCTGGGATTTGAATTTTTTAGGTTCTTTGCGCCTGATCAGTCTTTCATCCTCCGATTCCAATTGGGATTTATATTTGTTACGTTACTTCAGGTTTCCTAAATGTCATTGATTTGTTGATAAAATTATTTTAATTTCAGCCAAGGATTTTCCAACTGTCCAGAAGAGAGTGGCAGAGTTGATTAAAGGAAAGATTCTTGTTGGCCATGCCTTGCGTAATGATCTTAAGGTATCTAGATTAATGTAGTTTATGGTTTGAAGTATAAACCTGAAAAGTTTAGTAAAGATATCTATTGATTTGACAGGCATTGCTCTTGAGTCATCCCAAGAAGGATGTGAGAGACACCTCCGAGTACCAATTCTTTCAGAAGTAATAATTTCGCTCCCCATTGTACTTTATAACTTCCACCTTTTCAATTCTACTTTGAAATTCATCCATTCTCAAATGTTTGATGAAACAGGGAAGGAAGTAAAAGAGCTCTCCGCCATCTTGCAGCCGAGTTTCTTGGTGTTGAGATCCAAAACGGGGAGCACTGTCCTGTTAGTTCTCTGATCTTTTCAATACTTATATTCTTAGTGTCTTTTGTTGAACTGCTAGAAAAACCGGGGTATTGATCATAAAACGACTTGGGTTGACCTATTGGTCAATAAGGGCCATGAAATATTAAAGGGGGCTTAGATAAAGTGGATTCAAGTGATGATGACCGCCTACTTAGGATTCTATAAGCCATGATGGCCGCCTACTTAGAATTCTATATCCTATGAGTTTTCTTGACAACCAAATGTTATAGAGTTCGACAATTATCCCACGAAACTAATCACTAGTTAAAGTGCAACACAAGCTTGACTCAGACACTCTAATTGAAAAAATGGAAATTGGTACAAGGAATGACTTCAAGTTCCAAAAAAGTTGGAAAGGTATACCCACAATATAAAAAAGGGGTTAAATTACACATTTAGTCTATGAACTTTCAGCTATGGCTATTTGGTTCTTAAACTTTCAAAATGTCCAGTAGGTTGTTGAACTTTAAATTTTGTGTCTAATAATTCCCTGAACTTTAAATTGTGTCTAATAAGGTCCTTGATATGTTCGATTTTTTTTTTTTTTTTTTTAGAAAATGTAATTGATCTATTATATATATATTTGAAATTTTGTTTAATGGAATGCTAGGATTTCAATTTTTATGTTTAGTAGATACCTGAATTTTAAAAAATATGTCGAATAGGTCAAGGACTTATTAGATACAACATTGAAAATTTTATGGATCTACTAGACACAAATTGAAAGTTTAAGAATTTATTACACTTTTTAAACCATAGAGACTTAATCAACATAAAATTCAAAGTTTAAGAGTTTATTAGGCGTTTTTTTAAAGTTCACGGATCTATTTGACATGAAATTGAATGTTCAAGAATTTATTAGACACTTTTGAAAATTCAAGGACCAATAGACATAAACTTGAAAGTTCAAGGACTAAACTTGTAATTTAACCAAAGAAAACTATAATGCATCCAATATTTTATGGTAGTTACAACTTACAAAAGTCCTACTTTACCACCATGATACTTGATTGCATCCTAAGATTCATGACCACCAAAAGCAAGAACTCCCATCTCCGTGTGAATTCACTACCATGTCTGACCTCATTTTTGCAAATTCTGGGCATCCATATATTGTTCCGGTTTCCTCTATTACTATCAATGCCAACAGCTTTCAACGAATTTTATCCAGATCGTTTTTCTCTAATATTGTTAATATGTTGTCATGGGACATTTTGTCTTGAAAGATTTGTGAAATTTGGGTGAACTTTCTTTTGTAGGTAGAAGATGCTCGTTCTGCAATGCTGCTGTATCAGAAGAAAAGAAAAGAGTGGGAAAAGAGTGTCAAAGCTGAAATAAAGCTTAAATTGAAGCAAAAGAAACGCAGGCCAAGGAAGAAATCCAAGGATGGAAGTGGTTTTGAATGACTTAGATCTTACAAAAATGTGTAACTTGGTAGTATAGAAGTGAGTAAATTACAGGCATTTGAAGCCATGAGTTCCATTCTTATCATGAGTGAGACTATTGGCCTGTGTTCTTGGCCAAATTTTTGATCCTCAGGCTCGAAAAGAATTACTGGTTATTAATGTTGTATGGATACATCAACCTAATATCCTAAAGCAACTTTTAATCTTGAATCATAAAATGTGTAATGGAGAAGTTAATGTAGGTTGTATTTAATAGTAATGTTATTAAAGTGAATAATAGTTATCTTAATATAAATTATATAATGAATGTGAAAGTAAAA

mRNA sequence

GAGCACATAAAATTTAACACCTTTCAAATTTTAAGTTTCAAATACTATTTGATAAACTTGTAAATTTTAAAACGATGAAAAATTAGAAATTAGAACCTCCTCCTTCCTCTATTTTCCGGTTTAGGGCCACCGGGCGAAGACGGCGGAAGTGGACGGCTATTAGTAGTATGTAAATCGTGGGAGTTGGGCGTCAAAGTGGGAGCTTCAACACTATGGAATCTCAGCTCAAGAAGACCCCTAAACCCAAATTGCTTAACCCCAATTGGGCGCTACTCCAACAACAGCTGAAACCCCATGGTTCAAACCATTCAAGGTCCTCTACTGTTCCGAAATCCGAAGCTTCATCAAAAACCCTTTTAGGGAAACGCAAGGAAAGATCTGATGTGGAGTCAAATTATTCCCAGAAGAATATTCTCATTCCGGTGAATGATGATTTTAGTGTTACAGATGAAGTAGCCATGGATTGTGAAATGGTTGGCGTGGGTCAAGGTAACAAAAGTGCCCTTGGACGAGTTACACTGGTAAACAAATGGGGGAATGTTATATACGATGAGTTTGTACGCCCTATAGAGCGCGTGGTTGACTTTCGGACTCAAATTAGTGGCATAAGACCCTGCGACTTGAAGAAAGCCAAGGATTTTCCAACTGTCCAGAAGAGAGTGGCAGAGTTGATTAAAGGAAAGATTCTTGTTGGCCATGCCTTGCGTAATGATCTTAAGGCATTGCTCTTGAGTCATCCCAAGAAGGATGTGAGAGACACCTCCGAGTACCAATTCTTTCAGAAGGAAGGAAGTAAAAGAGCTCTCCGCCATCTTGCAGCCGAGTTTCTTGGTGTTGAGATCCAAAACGGGGAGCACTGTCCTGTAGAAGATGCTCGTTCTGCAATGCTGCTGTATCAGAAGAAAAGAAAAGAGTGGGAAAAGAGTGTCAAAGCTGAAATAAAGCTTAAATTGAAGCAAAAGAAACGCAGGCCAAGGAAGAAATCCAAGGATGGAAGTGGTTTTGAATGACTTAGATCTTACAAAAATGTGTAACTTGGTAGTATAGAAGTGAGTAAATTACAGGCATTTGAAGCCATGAGTTCCATTCTTATCATGAGTGAGACTATTGGCCTGTGTTCTTGGCCAAATTTTTGATCCTCAGGCTCGAAAAGAATTACTGGTTATTAATGTTGTATGGATACATCAACCTAATATCCTAAAGCAACTTTTAATCTTGAATCATAAAATGTGTAATGGAGAAGTTAATGTAGGTTGTATTTAATAGTAATGTTATTAAAGTGAATAATAGTTATCTTAATATAAATTATATAATGAATGTGAAAGTAAAA

Coding sequence (CDS)

ATGGAATCTCAGCTCAAGAAGACCCCTAAACCCAAATTGCTTAACCCCAATTGGGCGCTACTCCAACAACAGCTGAAACCCCATGGTTCAAACCATTCAAGGTCCTCTACTGTTCCGAAATCCGAAGCTTCATCAAAAACCCTTTTAGGGAAACGCAAGGAAAGATCTGATGTGGAGTCAAATTATTCCCAGAAGAATATTCTCATTCCGGTGAATGATGATTTTAGTGTTACAGATGAAGTAGCCATGGATTGTGAAATGGTTGGCGTGGGTCAAGGTAACAAAAGTGCCCTTGGACGAGTTACACTGGTAAACAAATGGGGGAATGTTATATACGATGAGTTTGTACGCCCTATAGAGCGCGTGGTTGACTTTCGGACTCAAATTAGTGGCATAAGACCCTGCGACTTGAAGAAAGCCAAGGATTTTCCAACTGTCCAGAAGAGAGTGGCAGAGTTGATTAAAGGAAAGATTCTTGTTGGCCATGCCTTGCGTAATGATCTTAAGGCATTGCTCTTGAGTCATCCCAAGAAGGATGTGAGAGACACCTCCGAGTACCAATTCTTTCAGAAGGAAGGAAGTAAAAGAGCTCTCCGCCATCTTGCAGCCGAGTTTCTTGGTGTTGAGATCCAAAACGGGGAGCACTGTCCTGTAGAAGATGCTCGTTCTGCAATGCTGCTGTATCAGAAGAAAAGAAAAGAGTGGGAAAAGAGTGTCAAAGCTGAAATAAAGCTTAAATTGAAGCAAAAGAAACGCAGGCCAAGGAAGAAATCCAAGGATGGAAGTGGTTTTGAATGA

Protein sequence

MESQLKKTPKPKLLNPNWALLQQQLKPHGSNHSRSSTVPKSEASSKTLLGKRKERSDVESNYSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGSKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRRPRKKSKDGSGFE

Homology

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BLAST of Clc11G19100 vs. NCBI nr
Match: XP_008463709.1 (PREDICTED: RNA exonuclease 4 [Cucumis melo] >ADN33800.1 RNA exonuclease [Cucumis melo subsp. melo])

HSP 1 Score: 492.7 bits (1267), Expect = 2.0e-135
Identity = 251/265 (94.72%), Postives = 259/265 (97.74%), Query Frame = 0


Query: 1   MESQLKKTPKPKLLNPNWALLQQQLKPHGSNHSRSSTVPKSEASSKTLLGKRKERSDVES 60
           M SQLKK PKPKLLNPNWA+LQQ+LKPHGSNHS++STVPKSEASSKTLLGKRKERSDVES
Sbjct: 1   MTSQLKKNPKPKLLNPNWAILQQKLKPHGSNHSKASTVPKSEASSKTLLGKRKERSDVES 60

Query: 61  NYSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE 120
           N+SQKNILIPVNDDFS+TDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE
Sbjct: 61  NHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE 120

Query: 121 RVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDV 180
           RVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPK DV
Sbjct: 121 RVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKNDV 180

Query: 181 RDTSEYQFFQKEGSKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK 240
           RDTSEYQFFQKEG KRALRHLAAEFLGV+IQNGEHCPVEDARSAMLLYQKKRKEWEKSVK
Sbjct: 181 RDTSEYQFFQKEGCKRALRHLAAEFLGVQIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK 240

Query: 241 AEIKLKLKQKKRRPRKKSKDGSGFE 266
           AE KLKLKQKKR+PRKKSKDG GFE
Sbjct: 241 AEQKLKLKQKKRKPRKKSKDGGGFE 265

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BLAST of Clc11G19100 vs. NCBI nr
Match: XP_038897122.1 (RNA exonuclease 4 isoform X3 [Benincasa hispida])

HSP 1 Score: 481.1 bits (1237), Expect = 6.2e-132
Identity = 250/265 (94.34%), Postives = 256/265 (96.60%), Query Frame = 0


Query: 1   MESQLKKTPKPKLLNPNWALLQQQLKPHGSNHSRSSTVPKSEASSKTLLGKRKERSDVES 60
           MESQLKKT KPKLLNPNWALLQQ+LKP GSNHSRSSTVPKSEASSKTLLGKRKERSDVES
Sbjct: 1   MESQLKKTSKPKLLNPNWALLQQKLKPLGSNHSRSSTVPKSEASSKTLLGKRKERSDVES 60

Query: 61  NYSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE 120
           N+SQKNILIPVNDDFS+TD VAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE
Sbjct: 61  NHSQKNILIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE 120

Query: 121 RVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDV 180
           RVVDFRTQISGIRP DLKKAKDF TVQKRVAELIKGKILVGHALRNDLKALLLSHPK+DV
Sbjct: 121 RVVDFRTQISGIRPSDLKKAKDFSTVQKRVAELIKGKILVGHALRNDLKALLLSHPKQDV 180

Query: 181 RDTSEYQFFQKEGSKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK 240
           RDTSEYQFFQKEG +RALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK
Sbjct: 181 RDTSEYQFFQKEGCRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK 240

Query: 241 AEIKLKLKQKKRRPRKKSKDGSGFE 266
            EIKLKLKQKKR+ RKKSKDG GFE
Sbjct: 241 GEIKLKLKQKKRKRRKKSKDGGGFE 265

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BLAST of Clc11G19100 vs. NCBI nr
Match: XP_004146040.1 (RNA exonuclease 4 [Cucumis sativus])

HSP 1 Score: 479.6 bits (1233), Expect = 1.8e-131
Identity = 248/265 (93.58%), Postives = 255/265 (96.23%), Query Frame = 0


Query: 1   MESQLKKTPKPKLLNPNWALLQQQLKPHGSNHSRSSTVPKSEASSKTLLGKRKERSDVES 60
           M+SQLKK PKPKLLNPNWALLQQ+L PHGSNH  S+TV KSEASSKTLLGKRKERSDVES
Sbjct: 1   MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNH--SNTVLKSEASSKTLLGKRKERSDVES 60

Query: 61  NYSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE 120
           N+SQKNILIPVNDDFS+TDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE
Sbjct: 61  NHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE 120

Query: 121 RVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDV 180
           RVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGK+LVGHALRNDLKALLLSHPK DV
Sbjct: 121 RVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDV 180

Query: 181 RDTSEYQFFQKEGSKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK 240
           RDTSEYQFFQKEG KRALRHLAAEFL VEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK
Sbjct: 181 RDTSEYQFFQKEGCKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK 240

Query: 241 AEIKLKLKQKKRRPRKKSKDGSGFE 266
           AE KLKLKQKKR+PRKKSKDG GFE
Sbjct: 241 AEQKLKLKQKKRKPRKKSKDGGGFE 263

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BLAST of Clc11G19100 vs. NCBI nr
Match: XP_038897121.1 (RNA exonuclease 4 isoform X2 [Benincasa hispida])

HSP 1 Score: 474.2 bits (1219), Expect = 7.5e-130
Identity = 250/272 (91.91%), Postives = 256/272 (94.12%), Query Frame = 0


Query: 1   MESQLKKTPKPKLLNPNWALLQQ-------QLKPHGSNHSRSSTVPKSEASSKTLLGKRK 60
           MESQLKKT KPKLLNPNWALLQQ       +LKP GSNHSRSSTVPKSEASSKTLLGKRK
Sbjct: 1   MESQLKKTSKPKLLNPNWALLQQVLLVVVVKLKPLGSNHSRSSTVPKSEASSKTLLGKRK 60

Query: 61  ERSDVESNYSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYD 120
           ERSDVESN+SQKNILIPVNDDFS+TD VAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYD
Sbjct: 61  ERSDVESNHSQKNILIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYD 120

Query: 121 EFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLL 180
           EFVRPIERVVDFRTQISGIRP DLKKAKDF TVQKRVAELIKGKILVGHALRNDLKALLL
Sbjct: 121 EFVRPIERVVDFRTQISGIRPSDLKKAKDFSTVQKRVAELIKGKILVGHALRNDLKALLL 180

Query: 181 SHPKKDVRDTSEYQFFQKEGSKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRK 240
           SHPK+DVRDTSEYQFFQKEG +RALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRK
Sbjct: 181 SHPKQDVRDTSEYQFFQKEGCRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRK 240

Query: 241 EWEKSVKAEIKLKLKQKKRRPRKKSKDGSGFE 266
           EWEKSVK EIKLKLKQKKR+ RKKSKDG GFE
Sbjct: 241 EWEKSVKGEIKLKLKQKKRKRRKKSKDGGGFE 272

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BLAST of Clc11G19100 vs. NCBI nr
Match: XP_038897120.1 (RNA exonuclease 4 isoform X1 [Benincasa hispida])

HSP 1 Score: 473.8 bits (1218), Expect = 9.8e-130
Identity = 250/273 (91.58%), Postives = 256/273 (93.77%), Query Frame = 0


Query: 1   MESQLKKTPKPKLLNPNWALLQQ--------QLKPHGSNHSRSSTVPKSEASSKTLLGKR 60
           MESQLKKT KPKLLNPNWALLQQ        +LKP GSNHSRSSTVPKSEASSKTLLGKR
Sbjct: 1   MESQLKKTSKPKLLNPNWALLQQVLLVVVVVKLKPLGSNHSRSSTVPKSEASSKTLLGKR 60

Query: 61  KERSDVESNYSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIY 120
           KERSDVESN+SQKNILIPVNDDFS+TD VAMDCEMVGVGQGNKSALGRVTLVNKWGNVIY
Sbjct: 61  KERSDVESNHSQKNILIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIY 120

Query: 121 DEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALL 180
           DEFVRPIERVVDFRTQISGIRP DLKKAKDF TVQKRVAELIKGKILVGHALRNDLKALL
Sbjct: 121 DEFVRPIERVVDFRTQISGIRPSDLKKAKDFSTVQKRVAELIKGKILVGHALRNDLKALL 180

Query: 181 LSHPKKDVRDTSEYQFFQKEGSKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKR 240
           LSHPK+DVRDTSEYQFFQKEG +RALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKR
Sbjct: 181 LSHPKQDVRDTSEYQFFQKEGCRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKR 240

Query: 241 KEWEKSVKAEIKLKLKQKKRRPRKKSKDGSGFE 266
           KEWEKSVK EIKLKLKQKKR+ RKKSKDG GFE
Sbjct: 241 KEWEKSVKGEIKLKLKQKKRKRRKKSKDGGGFE 273

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BLAST of Clc11G19100 vs. ExPASy Swiss-Prot
Match: Q91560 (RNA exonuclease 4 OS=Xenopus laevis OX=8355 GN=rexo4 PE=2 SV=2)

HSP 1 Score: 176.4 bits (446), Expect = 4.3e-43
Identity = 89/185 (48.11%), Postives = 133/185 (71.89%), Query Frame = 0


Query: 77  VTDEVAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPC 136
           +T  VAMDCEMVGVG  G +S L RV++VN +G  +YD++V+P ERV D+RT +SGIRP 
Sbjct: 231 LTRTVAMDCEMVGVGMDGEESILARVSIVNLFGKCVYDKYVKPTERVTDYRTAVSGIRPE 290

Query: 137 DLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQK--EG 196
           D+KK + F  VQK V+E+++G+ LVGHA+ NDLK L L HPKK +RDT +Y+ F++  + 
Sbjct: 291 DVKKGEPFKVVQKEVSEILRGRTLVGHAVHNDLKILFLDHPKKAIRDTQKYKPFKQKVKS 350

Query: 197 SKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIK--LKLKQKK 256
            + +L+ L  + L V++Q GEHC V+DA++AM LY  ++K WE ++KA+    + + +K 
Sbjct: 351 GRPSLKLLCEKILNVKVQTGEHCSVQDAQAAMRLYTMEKKSWEVAIKAKYTGVMPVDRKS 410

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BLAST of Clc11G19100 vs. ExPASy Swiss-Prot
Match: Q9GZR2 (RNA exonuclease 4 OS=Homo sapiens OX=9606 GN=REXO4 PE=1 SV=2)

HSP 1 Score: 174.5 bits (441), Expect = 1.6e-42
Identity = 83/167 (49.70%), Postives = 122/167 (73.05%), Query Frame = 0


Query: 77  VTDEVAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPC 136
           +T  +A+DCEMVGVG +G +S   RV++VN++G  +YD++V+P E V D+RT +SGIRP 
Sbjct: 240 LTRALALDCEMVGVGPKGEESMAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPE 299

Query: 137 DLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFF--QKEG 196
           +LK+ ++   VQK VAE++KG+ILVGHAL NDLK L L HPKK +RDT +Y+ F  Q + 
Sbjct: 300 NLKQGEELEVVQKEVAEMLKGRILVGHALHNDLKVLFLDHPKKKIRDTQKYKPFKSQVKS 359

Query: 197 SKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK 241
            + +LR L+ + LG+++Q  EHC ++DA++AM LY   +KEWE   +
Sbjct: 360 GRPSLRLLSEKILGLQVQQAEHCSIQDAQAAMRLYVMVKKEWESMAR 406

[Close]

BLAST of Clc11G19100 vs. ExPASy Swiss-Prot
Match: Q6PAQ4 (RNA exonuclease 4 OS=Mus musculus OX=10090 GN=Rexo4 PE=2 SV=2)

HSP 1 Score: 174.1 bits (440), Expect = 2.1e-42
Identity = 80/165 (48.48%), Postives = 122/165 (73.94%), Query Frame = 0


Query: 77  VTDEVAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPC 136
           +T  +A+DCEMVGVG +G +S   RV++VN++G  +YD++V+P E V D+RT +SGIRP 
Sbjct: 250 LTKALALDCEMVGVGPKGEESIAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPE 309

Query: 137 DLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQK--EG 196
           +LK+ ++F  V+K VAE++KG+ILVGHAL NDLK L L HPKK +RDT +++ F+   + 
Sbjct: 310 NLKQGEEFEVVKKEVAEMLKGRILVGHALHNDLKVLFLDHPKKKIRDTQKFKPFRSRVKS 369

Query: 197 SKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKS 239
            + +L+ L+ + LG+ +Q  EHC ++DA++AM LY   ++EWE S
Sbjct: 370 GRPSLKRLSEKILGIRVQQAEHCSIQDAQAAMRLYVMVKREWESS 414

[Close]

BLAST of Clc11G19100 vs. ExPASy Swiss-Prot
Match: Q6DEW6 (RNA exonuclease 4 OS=Xenopus tropicalis OX=8364 GN=rexo4 PE=2 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 2.8e-42
Identity = 89/183 (48.63%), Postives = 128/183 (69.95%), Query Frame = 0


Query: 77  VTDEVAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPC 136
           +T  VAMDCEMVGVG  G +S L RV++VN +G  +YD++VRP ERV D+RT +SGIRP 
Sbjct: 225 LTRTVAMDCEMVGVGLDGEESMLARVSIVNLFGKCVYDKYVRPTERVTDYRTAVSGIRPD 284

Query: 137 DLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQK--EG 196
           D+K  + F  VQ  VAE+++G+ LVGHA+ NDLK L L HPKK +RDT +Y+ F++  + 
Sbjct: 285 DIKNGEAFKDVQAEVAEILRGRTLVGHAVHNDLKILFLDHPKKAIRDTQKYKPFKEKVKS 344

Query: 197 SKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRR 256
            + +L+ L  + L V++Q GEHC V+DA++AM LY  ++K WE ++KA+       K + 
Sbjct: 345 GRPSLKLLCEKILNVKVQTGEHCSVQDAQAAMRLYTMEKKCWEAAIKAKYAGVTAAKAKG 404

[Close]

BLAST of Clc11G19100 vs. ExPASy Swiss-Prot
Match: Q08237 (RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=REX4 PE=1 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.5e-40
Identity = 84/161 (52.17%), Postives = 122/161 (75.78%), Query Frame = 0


Query: 81  VAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKK 140
           +AMDCE VGVG +G +SAL R+++VN +G+V+ DEFV+P E+VV++RT +SGI+P  +K 
Sbjct: 122 IAMDCEFVGVGPEGKESALARISIVNYFGHVVLDEFVKPREKVVEWRTWVSGIKPEHMKN 181

Query: 141 AKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQK---EGSKR 200
           A  F   QK+ A++++G+ILVGHAL++DL+AL+LSHPK  +RDTS +  F+K   +G   
Sbjct: 182 AITFKEAQKKTADILEGRILVGHALKHDLEALMLSHPKSLLRDTSRHLPFRKLYAKGKTP 241

Query: 201 ALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEK 238
           +L+ L  E L + IQ GEH  VEDAR+ MLLY+K++ E+EK
Sbjct: 242 SLKKLTREVLKISIQEGEHSSVEDARATMLLYKKEKTEFEK 282

[Close]

BLAST of Clc11G19100 vs. ExPASy TrEMBL
Match: E5GBF8 (RNA exonuclease 4 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 492.7 bits (1267), Expect = 9.9e-136
Identity = 251/265 (94.72%), Postives = 259/265 (97.74%), Query Frame = 0


Query: 1   MESQLKKTPKPKLLNPNWALLQQQLKPHGSNHSRSSTVPKSEASSKTLLGKRKERSDVES 60
           M SQLKK PKPKLLNPNWA+LQQ+LKPHGSNHS++STVPKSEASSKTLLGKRKERSDVES
Sbjct: 1   MTSQLKKNPKPKLLNPNWAILQQKLKPHGSNHSKASTVPKSEASSKTLLGKRKERSDVES 60

Query: 61  NYSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE 120
           N+SQKNILIPVNDDFS+TDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE
Sbjct: 61  NHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE 120

Query: 121 RVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDV 180
           RVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPK DV
Sbjct: 121 RVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKNDV 180

Query: 181 RDTSEYQFFQKEGSKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK 240
           RDTSEYQFFQKEG KRALRHLAAEFLGV+IQNGEHCPVEDARSAMLLYQKKRKEWEKSVK
Sbjct: 181 RDTSEYQFFQKEGCKRALRHLAAEFLGVQIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK 240

Query: 241 AEIKLKLKQKKRRPRKKSKDGSGFE 266
           AE KLKLKQKKR+PRKKSKDG GFE
Sbjct: 241 AEQKLKLKQKKRKPRKKSKDGGGFE 265

[Close]

BLAST of Clc11G19100 vs. ExPASy TrEMBL
Match: A0A1S3CJW0 (RNA exonuclease 4 OS=Cucumis melo OX=3656 GN=LOC103501792 PE=3 SV=1)

HSP 1 Score: 492.7 bits (1267), Expect = 9.9e-136
Identity = 251/265 (94.72%), Postives = 259/265 (97.74%), Query Frame = 0


Query: 1   MESQLKKTPKPKLLNPNWALLQQQLKPHGSNHSRSSTVPKSEASSKTLLGKRKERSDVES 60
           M SQLKK PKPKLLNPNWA+LQQ+LKPHGSNHS++STVPKSEASSKTLLGKRKERSDVES
Sbjct: 1   MTSQLKKNPKPKLLNPNWAILQQKLKPHGSNHSKASTVPKSEASSKTLLGKRKERSDVES 60

Query: 61  NYSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE 120
           N+SQKNILIPVNDDFS+TDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE
Sbjct: 61  NHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE 120

Query: 121 RVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDV 180
           RVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPK DV
Sbjct: 121 RVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKNDV 180

Query: 181 RDTSEYQFFQKEGSKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK 240
           RDTSEYQFFQKEG KRALRHLAAEFLGV+IQNGEHCPVEDARSAMLLYQKKRKEWEKSVK
Sbjct: 181 RDTSEYQFFQKEGCKRALRHLAAEFLGVQIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK 240

Query: 241 AEIKLKLKQKKRRPRKKSKDGSGFE 266
           AE KLKLKQKKR+PRKKSKDG GFE
Sbjct: 241 AEQKLKLKQKKRKPRKKSKDGGGFE 265

[Close]

BLAST of Clc11G19100 vs. ExPASy TrEMBL
Match: A0A0A0KZK3 (RNA exonuclease 4 OS=Cucumis sativus OX=3659 GN=Csa_4G628920 PE=3 SV=1)

HSP 1 Score: 479.6 bits (1233), Expect = 8.7e-132
Identity = 248/265 (93.58%), Postives = 255/265 (96.23%), Query Frame = 0


Query: 1   MESQLKKTPKPKLLNPNWALLQQQLKPHGSNHSRSSTVPKSEASSKTLLGKRKERSDVES 60
           M+SQLKK PKPKLLNPNWALLQQ+L PHGSNH  S+TV KSEASSKTLLGKRKERSDVES
Sbjct: 1   MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNH--SNTVLKSEASSKTLLGKRKERSDVES 60

Query: 61  NYSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE 120
           N+SQKNILIPVNDDFS+TDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE
Sbjct: 61  NHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE 120

Query: 121 RVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDV 180
           RVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGK+LVGHALRNDLKALLLSHPK DV
Sbjct: 121 RVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDV 180

Query: 181 RDTSEYQFFQKEGSKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK 240
           RDTSEYQFFQKEG KRALRHLAAEFL VEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK
Sbjct: 181 RDTSEYQFFQKEGCKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK 240

Query: 241 AEIKLKLKQKKRRPRKKSKDGSGFE 266
           AE KLKLKQKKR+PRKKSKDG GFE
Sbjct: 241 AEQKLKLKQKKRKPRKKSKDGGGFE 263

[Close]

BLAST of Clc11G19100 vs. ExPASy TrEMBL
Match: A0A6J1FBB2 (RNA exonuclease 4 OS=Cucurbita moschata OX=3662 GN=LOC111442550 PE=3 SV=1)

HSP 1 Score: 454.9 bits (1169), Expect = 2.3e-124
Identity = 234/265 (88.30%), Postives = 250/265 (94.34%), Query Frame = 0


Query: 1   MESQLKKTPKPKLLNPNWALLQQQLKPHGSNHSRSSTVPKSEASSKTLLGKRKERSDVES 60
           MESQLKK+ KPKLLNPNWALLQQ+L PHGS   RSS+VPKSEASSKTLLGKRK+RSD ES
Sbjct: 1   MESQLKKSAKPKLLNPNWALLQQKLNPHGS--KRSSSVPKSEASSKTLLGKRKDRSDEES 60

Query: 61  NYSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE 120
           ++S K +LIPVNDDFS+TD VAMDCEMVGVGQGNKSALGRVT+VNKWGNVIYDEFVRPIE
Sbjct: 61  DHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDEFVRPIE 120

Query: 121 RVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDV 180
           RVVDFRT+ISGIRPCDL+KAKDFPTVQKRVAELIKG+ILVGHALRNDLKALLLSHPKKDV
Sbjct: 121 RVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDV 180

Query: 181 RDTSEYQFFQKEGSKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK 240
           RDTSEYQFFQ+ G +RALRHLAAE LGVEIQNGEHCPVEDARSAMLLYQKK KEWEKSVK
Sbjct: 181 RDTSEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVK 240

Query: 241 AEIKLKLKQKKRRPRKKSKDGSGFE 266
           AE+KLKLKQKKR+PRKKSKDG G E
Sbjct: 241 AEVKLKLKQKKRKPRKKSKDGGGVE 263

[Close]

BLAST of Clc11G19100 vs. ExPASy TrEMBL
Match: A0A5A7VEJ2 (RNA exonuclease 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001270 PE=3 SV=1)

HSP 1 Score: 452.6 bits (1163), Expect = 1.1e-123
Identity = 231/242 (95.45%), Postives = 238/242 (98.35%), Query Frame = 0


Query: 24  QLKPHGSNHSRSSTVPKSEASSKTLLGKRKERSDVESNYSQKNILIPVNDDFSVTDEVAM 83
           +LKPHGSNHS++STVPKSEASSKTLLGKRKERSDVESN+SQKNILIPVNDDFS+TDEVAM
Sbjct: 6   KLKPHGSNHSKASTVPKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAM 65

Query: 84  DCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDF 143
           DCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDF
Sbjct: 66  DCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDF 125

Query: 144 PTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGSKRALRHLAA 203
           PTVQKRVAELIKGKILVGHALRNDLKALLLSHPK DVRDTSEYQFFQKEG KRALRHLAA
Sbjct: 126 PTVQKRVAELIKGKILVGHALRNDLKALLLSHPKNDVRDTSEYQFFQKEGCKRALRHLAA 185

Query: 204 EFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRRPRKKSKDGSG 263
           EFLGV+IQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAE KLKLKQKKR+PRKKSKDG G
Sbjct: 186 EFLGVQIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQKLKLKQKKRKPRKKSKDGGG 245

Query: 264 FE 266
           FE
Sbjct: 246 FE 247

[Close]

BLAST of Clc11G19100 vs. TAIR 10
Match: AT3G15080.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 342.0 bits (876), Expect = 4.2e-94
Identity = 178/268 (66.42%), Postives = 216/268 (80.60%), Query Frame = 0


Query: 1   MESQLKK------TPKPKLLNPNWALLQQQLKPHGSNHSRSSTVPKSEASSKTLLGKRKE 60
           M S LK+      TPKP  LNPNW+LLQQ+LK     ++R S+ P++ +S   +LGKRKE
Sbjct: 1   MSSDLKRKPKKKITPKPVQLNPNWSLLQQKLKSDSHGNTRKSSNPENPSS---ILGKRKE 60

Query: 61  RSDVESNYSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDE 120
           R D E +  + N L PVNDD S+TDEVAMDCEMVGV QG KSALGRVTLVNKWGNV+YDE
Sbjct: 61  RPDSEVDVPKINPLAPVNDDSSLTDEVAMDCEMVGVSQGTKSALGRVTLVNKWGNVLYDE 120

Query: 121 FVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLS 180
           FVRP+E VVDFRT ISGIRP DL+KAKDF   Q +VAELIKGKILVGHAL NDLKALLL+
Sbjct: 121 FVRPVEHVVDFRTSISGIRPRDLRKAKDFRVAQTKVAELIKGKILVGHALHNDLKALLLT 180

Query: 181 HPKKDVRDTSEYQFFQKEGSKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKE 240
           HPKKD+RDT EYQ F K  ++++L+HLA+E LG +IQNGEHCP++DAR+AM+LYQK RKE
Sbjct: 181 HPKKDIRDTGEYQPFLKGKTRKSLKHLASEILGADIQNGEHCPIDDARAAMMLYQKNRKE 240

Query: 241 WEKSVKAEIKLKLKQKKRRPRKKSKDGS 263
           WEK+VK + ++ LKQKKR+P+KK+K G+
Sbjct: 241 WEKTVKDQTRMWLKQKKRKPKKKAKYGN 265

[Close]

BLAST of Clc11G19100 vs. TAIR 10
Match: AT2G48100.1 (Exonuclease family protein )

HSP 1 Score: 93.2 bits (230), Expect = 3.4e-19
Identity = 65/173 (37.57%), Postives = 95/173 (54.91%), Query Frame = 0


Query: 81  VAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKK 140
           +A+DCEMVG G  G       V LV+   NVI+   V+P+  V D+R +I+G+   DLK 
Sbjct: 133 MALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPVTDYRHEITGLTKEDLKD 192

Query: 141 AKDFPTVQKRVAELIKG--------KILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQK 200
                 V++RV   + G         +LVGH LR+D+  L L +P   +RDT++Y    K
Sbjct: 193 GMPLEHVRERVFSFLCGGQNDGAGRLLLVGHDLRHDMSCLKLEYPSHLLRDTAKYVPLMK 252

Query: 201 EG-SKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKR-KEWEKSVKAE 243
                ++L++L   +LG +IQ G+H   ED  SAM LY++ R +E   S KAE
Sbjct: 253 TNLVSQSLKYLTKSYLGYKIQCGKHEVYEDCVSAMRLYKRMRDQEHVCSGKAE 305

[Close]

BLAST of Clc11G19100 vs. TAIR 10
Match: AT2G48100.2 (Exonuclease family protein )

HSP 1 Score: 93.2 bits (230), Expect = 3.4e-19
Identity = 65/173 (37.57%), Postives = 95/173 (54.91%), Query Frame = 0


Query: 81  VAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKK 140
           +A+DCEMVG G  G       V LV+   NVI+   V+P+  V D+R +I+G+   DLK 
Sbjct: 133 MALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPVTDYRHEITGLTKEDLKD 192

Query: 141 AKDFPTVQKRVAELIKG--------KILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQK 200
                 V++RV   + G         +LVGH LR+D+  L L +P   +RDT++Y    K
Sbjct: 193 GMPLEHVRERVFSFLCGGQNDGAGRLLLVGHDLRHDMSCLKLEYPSHLLRDTAKYVPLMK 252

Query: 201 EG-SKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKR-KEWEKSVKAE 243
                ++L++L   +LG +IQ G+H   ED  SAM LY++ R +E   S KAE
Sbjct: 253 TNLVSQSLKYLTKSYLGYKIQCGKHEVYEDCVSAMRLYKRMRDQEHVCSGKAE 305

[Close]

BLAST of Clc11G19100 vs. TAIR 10
Match: AT2G48100.3 (Exonuclease family protein )

HSP 1 Score: 93.2 bits (230), Expect = 3.4e-19
Identity = 65/173 (37.57%), Postives = 95/173 (54.91%), Query Frame = 0


Query: 81  VAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKK 140
           +A+DCEMVG G  G       V LV+   NVI+   V+P+  V D+R +I+G+   DLK 
Sbjct: 133 MALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPVTDYRHEITGLTKEDLKD 192

Query: 141 AKDFPTVQKRVAELIKG--------KILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQK 200
                 V++RV   + G         +LVGH LR+D+  L L +P   +RDT++Y    K
Sbjct: 193 GMPLEHVRERVFSFLCGGQNDGAGRLLLVGHDLRHDMSCLKLEYPSHLLRDTAKYVPLMK 252

Query: 201 EG-SKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKR-KEWEKSVKAE 243
                ++L++L   +LG +IQ G+H   ED  SAM LY++ R +E   S KAE
Sbjct: 253 TNLVSQSLKYLTKSYLGYKIQCGKHEVYEDCVSAMRLYKRMRDQEHVCSGKAE 305

[Close]

BLAST of Clc11G19100 vs. TAIR 10
Match: AT3G27970.1 (Exonuclease family protein )

HSP 1 Score: 92.4 bits (228), Expect = 5.7e-19
Identity = 56/173 (32.37%), Postives = 89/173 (51.45%), Query Frame = 0


Query: 81  VAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKK 140
           VA+ C+MVG G  G+     RV + ++  NVI+  +V+P   V  +R + +GIRP +L+ 
Sbjct: 136 VALSCKMVGGGSDGSLDLCARVCITDESDNVIFHTYVKPSMAVTSYRYETTGIRPENLRD 195

Query: 141 AKDFPTVQKRVAELI--------------KGKILVGHALRNDLKALLLSHPKKDVRDTSE 200
           A     VQ+++ E +              K +ILVGH L +DL  L L +P   +RDT++
Sbjct: 196 AMPLKQVQRKIQEFLCNGEPMWKIRPRGGKARILVGHGLDHDLDRLQLEYPSSMIRDTAK 255

Query: 201 YQFFQKEGS-KRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEK 238
           Y    K      +L++L   +LG ++  G   P ED  + M LY + R +  K
Sbjct: 256 YPPLMKTSKLSNSLKYLTQAYLGYDVHFGIQDPYEDCVATMRLYTRMRYQKHK 308

The following BLAST results are available for this feature:

BLAST of Clc11G19100 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008463709.1	2.0e-135	94.72	PREDICTED: RNA exonuclease 4 [Cucumis melo] >ADN33800.1 RNA exonuclease [Cucumis...	[more]
XP_038897122.1	6.2e-132	94.34	RNA exonuclease 4 isoform X3 [Benincasa hispida]	[more]
XP_004146040.1	1.8e-131	93.58	RNA exonuclease 4 [Cucumis sativus]	[more]
XP_038897121.1	7.5e-130	91.91	RNA exonuclease 4 isoform X2 [Benincasa hispida]	[more]
XP_038897120.1	9.8e-130	91.58	RNA exonuclease 4 isoform X1 [Benincasa hispida]	[more]

BLAST of Clc11G19100 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q91560	4.3e-43	48.11	RNA exonuclease 4 OS=Xenopus laevis OX=8355 GN=rexo4 PE=2 SV=2	[more]
Q9GZR2	1.6e-42	49.70	RNA exonuclease 4 OS=Homo sapiens OX=9606 GN=REXO4 PE=1 SV=2	[more]
Q6PAQ4	2.1e-42	48.48	RNA exonuclease 4 OS=Mus musculus OX=10090 GN=Rexo4 PE=2 SV=2	[more]
Q6DEW6	2.8e-42	48.63	RNA exonuclease 4 OS=Xenopus tropicalis OX=8364 GN=rexo4 PE=2 SV=1	[more]
Q08237	1.5e-40	52.17	RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=55...	[more]

BLAST of Clc11G19100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E5GBF8	9.9e-136	94.72	RNA exonuclease 4 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A1S3CJW0	9.9e-136	94.72	RNA exonuclease 4 OS=Cucumis melo OX=3656 GN=LOC103501792 PE=3 SV=1	[more]
A0A0A0KZK3	8.7e-132	93.58	RNA exonuclease 4 OS=Cucumis sativus OX=3659 GN=Csa_4G628920 PE=3 SV=1	[more]
A0A6J1FBB2	2.3e-124	88.30	RNA exonuclease 4 OS=Cucurbita moschata OX=3662 GN=LOC111442550 PE=3 SV=1	[more]
A0A5A7VEJ2	1.1e-123	95.45	RNA exonuclease 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00...	[more]

BLAST of Clc11G19100 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15080.1	4.2e-94	66.42	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT2G48100.1	3.4e-19	37.57	Exonuclease family protein	[more]
AT2G48100.2	3.4e-19	37.57	Exonuclease family protein	[more]
AT2G48100.3	3.4e-19	37.57	Exonuclease family protein	[more]
AT3G27970.1	5.7e-19	32.37	Exonuclease family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013520	Exonuclease, RNase T/DNA polymerase III	SMART	SM00479	exoiiiendus	coord: 79..237 e-value: 1.3E-39 score: 147.6
IPR013520	Exonuclease, RNase T/DNA polymerase III	PFAM	PF00929	RNase_T	coord: 81..228 e-value: 2.9E-14 score: 53.9
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 77..255 e-value: 1.4E-56 score: 192.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 246..265
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..57
None	No IPR available	PANTHER	PTHR12801	RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED	coord: 42..255
None	No IPR available	PANTHER	PTHR12801:SF135	RNA EXONUCLEASE 4	coord: 42..255
IPR037431	RNA exonuclease 4, DEDDh 3'-5' exonuclease domain	CDD	cd06144	REX4_like	coord: 81..229 e-value: 9.33098E-93 score: 268.23
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 81..229

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G19100.1	Clc11G19100.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005634	nucleus
molecular_function	GO:0008408	3'-5' exonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016740	transferase activity