Clc11G18920 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G18920
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like
Location	ClcChr11: 29395725 .. 29396315 (-)
RNA-Seq Expression	Clc11G18920
Synteny	Clc11G18920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAGTAGTAAAGGCAAGGATGTTCATGAAGGATCGTCGTCAAATTCCTCCTCTTCTTCGTCTTTAATTGTTGTTGTTGATGAACATAATAATCAACAACAACAATTTGAACGAGGAGAAGTAGGAGTAGCAGCAACAACAACAATAGCACCTGTAAGTCGGTATGAGTCTCAAAAGAGGAGGGATTGGTACACGTTCGGGCAATATTTGAGGAACCAAAGGCCCCCCTTGGCTATATCTCAATGCAATTCAAGTCATGTATTGGATTTCCTTAGATATCTTGACCAATTTGGGAAGACAAAAGTGCATTTAAGTGGATGTGGTTTCTTTGGAGAACCTGAGCCACCAGGTCCTTGTACTTGCCCTCTTAGGCAAGCTTGGGGCAGCCTTGATGCTCTTATTGGTCGCCTTAGAGCTGCTTATGAAGAAAATGGAGGCTCCTCGGACACTAATCCATTTGCTAGTGGTGCTATTAGGGTTTACTTGCGAGAAGTTAGGGACTCTCAATCCAAGGCAAGAGGAATCCCATATAAGAAGAAGAAGAAAAAGAAGAATCCAATTAACCCTCATCAACAAGGTAAAATCTAA

mRNA sequence

ATGTCAAGTAGTAAAGGCAAGGATGTTCATGAAGGATCGTCGTCAAATTCCTCCTCTTCTTCGTCTTTAATTGTTGTTGTTGATGAACATAATAATCAACAACAACAATTTGAACGAGGAGAAGTAGGAGTAGCAGCAACAACAACAATAGCACCTGTAAGTCGGTATGAGTCTCAAAAGAGGAGGGATTGGTACACGTTCGGGCAATATTTGAGGAACCAAAGGCCCCCCTTGGCTATATCTCAATGCAATTCAAGTCATGTATTGGATTTCCTTAGATATCTTGACCAATTTGGGAAGACAAAAGTGCATTTAAGTGGATGTGGTTTCTTTGGAGAACCTGAGCCACCAGGTCCTTGTACTTGCCCTCTTAGGCAAGCTTGGGGCAGCCTTGATGCTCTTATTGGTCGCCTTAGAGCTGCTTATGAAGAAAATGGAGGCTCCTCGGACACTAATCCATTTGCTAGTGGTGCTATTAGGGTTTACTTGCGAGAAGTTAGGGACTCTCAATCCAAGGCAAGAGGAATCCCATATAAGAAGAAGAAGAAAAAGAAGAATCCAATTAACCCTCATCAACAAGGTAAAATCTAA

Coding sequence (CDS)

ATGTCAAGTAGTAAAGGCAAGGATGTTCATGAAGGATCGTCGTCAAATTCCTCCTCTTCTTCGTCTTTAATTGTTGTTGTTGATGAACATAATAATCAACAACAACAATTTGAACGAGGAGAAGTAGGAGTAGCAGCAACAACAACAATAGCACCTGTAAGTCGGTATGAGTCTCAAAAGAGGAGGGATTGGTACACGTTCGGGCAATATTTGAGGAACCAAAGGCCCCCCTTGGCTATATCTCAATGCAATTCAAGTCATGTATTGGATTTCCTTAGATATCTTGACCAATTTGGGAAGACAAAAGTGCATTTAAGTGGATGTGGTTTCTTTGGAGAACCTGAGCCACCAGGTCCTTGTACTTGCCCTCTTAGGCAAGCTTGGGGCAGCCTTGATGCTCTTATTGGTCGCCTTAGAGCTGCTTATGAAGAAAATGGAGGCTCCTCGGACACTAATCCATTTGCTAGTGGTGCTATTAGGGTTTACTTGCGAGAAGTTAGGGACTCTCAATCCAAGGCAAGAGGAATCCCATATAAGAAGAAGAAGAAAAAGAAGAATCCAATTAACCCTCATCAACAAGGTAAAATCTAA

Protein sequence

MSSSKGKDVHEGSSSNSSSSSSLIVVVDEHNNQQQQFERGEVGVAATTTIAPVSRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLSGCGFFGEPEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKARGIPYKKKKKKKNPINPHQQGKI

Homology

[Close]

BLAST of Clc11G18920 vs. NCBI nr
Match: XP_038896716.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Benincasa hispida])

HSP 1 Score: 368.2 bits (944), Expect = 4.3e-98
Identity = 181/193 (93.78%), Postives = 186/193 (96.37%), Query Frame = 0


Query: 1   MSSSKGKDVHEGSSSNSSSSSSLIVVVDEHNNQQQQFERGEVGVAATTTIAPVSRYESQK 60
           MSSSKGKDVHEGSSSNSSSSSSLIVVVD+HN QQ QF+R E  +AATTTIAPVSRYESQK
Sbjct: 1   MSSSKGKDVHEGSSSNSSSSSSLIVVVDDHNQQQHQFQREEAAIAATTTIAPVSRYESQK 60

Query: 61  RRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLSGCGFFGEPEPPGPC 120
           RRDWYTFGQYLRNQRPPLAISQCNSSHVL+FLRYLDQFGKTKVHL+GCGFFGEPEPPGPC
Sbjct: 61  RRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGEPEPPGPC 120

Query: 121 TCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKARGIPYKK 180
           TCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKARGIPYKK
Sbjct: 121 TCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKARGIPYKK 180

Query: 181 KKKKKNPINPHQQ 194
           KKKKKNPI  HQQ
Sbjct: 181 KKKKKNPITTHQQ 193

[Close]

BLAST of Clc11G18920 vs. NCBI nr
Match: XP_004146094.2 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Cucumis sativus] >KGN55073.1 hypothetical protein Csa_012765 [Cucumis sativus])

HSP 1 Score: 344.7 bits (883), Expect = 5.1e-91
Identity = 179/200 (89.50%), Postives = 187/200 (93.50%), Query Frame = 0


Query: 1   MSSSKGKDVHEGSSSNSSSSSS-LIVVVDEHNN--QQQQFERGEVGVAATTTI--APV-S 60
           MSSSKGKDVHEGSSSNSSSSSS LIVVVD+HN+  QQQQFERG+   A T+++  APV S
Sbjct: 1   MSSSKGKDVHEGSSSNSSSSSSALIVVVDDHNHHQQQQQFERGDEQAAPTSSVVGAPVIS 60

Query: 61  RYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLSGCGFFGEP 120
           RYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVL+FLRYLDQFGKTKVHL+GCGFFGEP
Sbjct: 61  RYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGEP 120

Query: 121 EPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKAR 180
           EP GPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKAR
Sbjct: 121 EPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKAR 180

Query: 181 GIPYKKKKKKKNPINPHQQG 195
           GIPYKKKKKKK PIN HQQG
Sbjct: 181 GIPYKKKKKKKIPINTHQQG 200

[Close]

BLAST of Clc11G18920 vs. NCBI nr
Match: KAA0066771.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo var. makuwa] >TYK27918.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo var. makuwa])

HSP 1 Score: 335.9 bits (860), Expect = 2.4e-88
Identity = 176/203 (86.70%), Postives = 183/203 (90.15%), Query Frame = 0


Query: 1   MSSSKGKDVHEGSSSNSSSSSS-LIVVVDE-------HNNQQQQFERGEVGVAATTTIAP 60
           MSSSKGKDVHEGSSSNSSSSSS L+VVVD+       H  QQQQFERG+   AA T +  
Sbjct: 1   MSSSKGKDVHEGSSSNSSSSSSALMVVVDDQNHHHHHHQQQQQQFERGD--EAAPTPV-- 60

Query: 61  VSRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLSGCGFFG 120
           +SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVL+FLRYLDQFGKTKVHL+GCGFFG
Sbjct: 61  ISRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFG 120

Query: 121 EPEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSK 180
           EPEP GPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSK
Sbjct: 121 EPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSK 180

Query: 181 ARGIPYKKKKKKKNPINPHQQGK 196
           ARGIPYKKKKKKK PIN HQQGK
Sbjct: 181 ARGIPYKKKKKKKIPINTHQQGK 199

[Close]

BLAST of Clc11G18920 vs. NCBI nr
Match: XP_008463732.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo])

HSP 1 Score: 334.7 bits (857), Expect = 5.3e-88
Identity = 175/202 (86.63%), Postives = 182/202 (90.10%), Query Frame = 0


Query: 1   MSSSKGKDVHEGSSSNSSSSSS-LIVVVDE-------HNNQQQQFERGEVGVAATTTIAP 60
           MSSSKGKDVHEGSSSNSSSSSS L+VVVD+       H  QQQQFERG+   AA T +  
Sbjct: 1   MSSSKGKDVHEGSSSNSSSSSSALMVVVDDQNHHHHHHQQQQQQFERGD--EAAPTPV-- 60

Query: 61  VSRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLSGCGFFG 120
           +SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVL+FLRYLDQFGKTKVHL+GCGFFG
Sbjct: 61  ISRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFG 120

Query: 121 EPEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSK 180
           EPEP GPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSK
Sbjct: 121 EPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSK 180

Query: 181 ARGIPYKKKKKKKNPINPHQQG 195
           ARGIPYKKKKKKK PIN HQQG
Sbjct: 181 ARGIPYKKKKKKKIPINTHQQG 198

[Close]

BLAST of Clc11G18920 vs. NCBI nr
Match: XP_022937367.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata])

HSP 1 Score: 319.7 bits (818), Expect = 1.8e-83
Identity = 159/194 (81.96%), Postives = 170/194 (87.63%), Query Frame = 0


Query: 1   MSSSKGKDVHEGSSSNSSSSSSLIVVVDEHNNQQQQFERGEVGVAATTTIAPVSRYESQK 60
           MS+SKG DV EGSSSNSSSSSSL+ V+++ N              A T +APVSRYESQK
Sbjct: 33  MSTSKGNDVGEGSSSNSSSSSSLVAVINDRNQ------------PAATAVAPVSRYESQK 92

Query: 61  RRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLSGCGFFGEPEPPGPC 120
           RRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHL+GCGFFG+PEPPGPC
Sbjct: 93  RRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPC 152

Query: 121 TCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKARGIPYKK 180
           TCPL+QAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREV+DSQSKARGIPYKK
Sbjct: 153 TCPLKQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKK 212

Query: 181 KKKKKNPINPHQQG 195
           KKKKK P + HQ G
Sbjct: 213 KKKKKIPTHTHQPG 214

[Close]

BLAST of Clc11G18920 vs. ExPASy Swiss-Prot
Match: Q9S7R3 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=LSH10 PE=1 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 5.5e-64
Identity = 116/150 (77.33%), Postives = 132/150 (88.00%), Query Frame = 0


Query: 38  ERGEVGVAATTTIAPV--SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYL 97
           ERG+  + ++ +  PV  SRYESQKRRDW TFGQYL+NQRPP+ +S C+ +HVLDFLRYL
Sbjct: 6   ERGKSLMESSGSEPPVTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYL 65

Query: 98  DQFGKTKVHLSGCGFFGEPEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFA 157
           DQFGKTKVH+ GC F+G+PEPP PCTCPLRQAWGSLDALIGRLRAAYEENGG  +TNPFA
Sbjct: 66  DQFGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFA 125

Query: 158 SGAIRVYLREVRDSQSKARGIPYKKKKKKK 186
           SGAIRVYLREVR+ Q+KARGIPYKKKKKKK
Sbjct: 126 SGAIRVYLREVRECQAKARGIPYKKKKKKK 155

[Close]

BLAST of Clc11G18920 vs. ExPASy Swiss-Prot
Match: A2XED8 (Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 3.7e-60
Identity = 104/142 (73.24%), Postives = 126/142 (88.73%), Query Frame = 0


Query: 45  AATTTIAPVSRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVH 104
           AA    A +SRYESQKRRDW TF QYLRN RPPL +++C+ +HV++FLRYLDQFGKTKVH
Sbjct: 21  AAPQPPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLRYLDQFGKTKVH 80

Query: 105 LSGCGFFGEPEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLR 164
            SGC F+G+P PPGPC CPLRQAWGSLDALIGRLRAAYEE+GG+ ++NPFA+ A+R+YLR
Sbjct: 81  ASGCAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAAYEESGGTPESNPFAARAVRIYLR 140

Query: 165 EVRDSQSKARGIPYKKKKKKKN 187
           EVRDSQ+KARGIPY+KKK+K++
Sbjct: 141 EVRDSQAKARGIPYEKKKRKRS 162

[Close]

BLAST of Clc11G18920 vs. ExPASy Swiss-Prot
Match: Q941W1 (Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 3.7e-60
Identity = 104/142 (73.24%), Postives = 126/142 (88.73%), Query Frame = 0


Query: 45  AATTTIAPVSRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVH 104
           AA    A +SRYESQKRRDW TF QYLRN RPPL +++C+ +HV++FLRYLDQFGKTKVH
Sbjct: 21  AAPQPPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLRYLDQFGKTKVH 80

Query: 105 LSGCGFFGEPEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLR 164
            SGC F+G+P PPGPC CPLRQAWGSLDALIGRLRAAYEE+GG+ ++NPFA+ A+R+YLR
Sbjct: 81  ASGCAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAAYEESGGTPESNPFAARAVRIYLR 140

Query: 165 EVRDSQSKARGIPYKKKKKKKN 187
           EVRDSQ+KARGIPY+KKK+K++
Sbjct: 141 EVRDSQAKARGIPYEKKKRKRS 162

[Close]

BLAST of Clc11G18920 vs. ExPASy Swiss-Prot
Match: A2YG32 (Protein G1-like2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_24078 PE=3 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 7.7e-58
Identity = 99/134 (73.88%), Postives = 118/134 (88.06%), Query Frame = 0


Query: 54  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLSGCGFFGE 113
           SRYESQKRRDW+TFGQYLRN RPPL +S+C+ +HVL+FLRYLDQFGKTKVH +GC FFG 
Sbjct: 21  SRYESQKRRDWHTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHAAGCPFFGH 80

Query: 114 PEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA 173
           P PP PC CPLRQAWGSLDAL+GRLRAA+EE+GG  + NPF + A+R+YLREVRDSQ+KA
Sbjct: 81  PSPPAPCPCPLRQAWGSLDALVGRLRAAFEEHGGRPEANPFGARAVRLYLREVRDSQAKA 140

Query: 174 RGIPYKKKKKKKNP 188
           RGI Y+KK++K+ P
Sbjct: 141 RGIAYEKKRRKRPP 154

[Close]

BLAST of Clc11G18920 vs. ExPASy Swiss-Prot
Match: Q652I1 (Protein G1-like2 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L2 PE=1 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 7.7e-58
Identity = 99/134 (73.88%), Postives = 118/134 (88.06%), Query Frame = 0


Query: 54  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLSGCGFFGE 113
           SRYESQKRRDW+TFGQYLRN RPPL +S+C+ +HVL+FLRYLDQFGKTKVH +GC FFG 
Sbjct: 21  SRYESQKRRDWHTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHAAGCPFFGH 80

Query: 114 PEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA 173
           P PP PC CPLRQAWGSLDAL+GRLRAA+EE+GG  + NPF + A+R+YLREVRDSQ+KA
Sbjct: 81  PSPPAPCPCPLRQAWGSLDALVGRLRAAFEEHGGRPEANPFGARAVRLYLREVRDSQAKA 140

Query: 174 RGIPYKKKKKKKNP 188
           RGI Y+KK++K+ P
Sbjct: 141 RGIAYEKKRRKRPP 154

[Close]

BLAST of Clc11G18920 vs. ExPASy TrEMBL
Match: A0A0A0L028 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G627230 PE=3 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 2.5e-91
Identity = 179/200 (89.50%), Postives = 187/200 (93.50%), Query Frame = 0


Query: 1   MSSSKGKDVHEGSSSNSSSSSS-LIVVVDEHNN--QQQQFERGEVGVAATTTI--APV-S 60
           MSSSKGKDVHEGSSSNSSSSSS LIVVVD+HN+  QQQQFERG+   A T+++  APV S
Sbjct: 1   MSSSKGKDVHEGSSSNSSSSSSALIVVVDDHNHHQQQQQFERGDEQAAPTSSVVGAPVIS 60

Query: 61  RYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLSGCGFFGEP 120
           RYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVL+FLRYLDQFGKTKVHL+GCGFFGEP
Sbjct: 61  RYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGEP 120

Query: 121 EPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKAR 180
           EP GPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKAR
Sbjct: 121 EPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKAR 180

Query: 181 GIPYKKKKKKKNPINPHQQG 195
           GIPYKKKKKKK PIN HQQG
Sbjct: 181 GIPYKKKKKKKIPINTHQQG 200

[Close]

BLAST of Clc11G18920 vs. ExPASy TrEMBL
Match: A0A5D3DWV8 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001030 PE=3 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 1.1e-88
Identity = 176/203 (86.70%), Postives = 183/203 (90.15%), Query Frame = 0


Query: 1   MSSSKGKDVHEGSSSNSSSSSS-LIVVVDE-------HNNQQQQFERGEVGVAATTTIAP 60
           MSSSKGKDVHEGSSSNSSSSSS L+VVVD+       H  QQQQFERG+   AA T +  
Sbjct: 1   MSSSKGKDVHEGSSSNSSSSSSALMVVVDDQNHHHHHHQQQQQQFERGD--EAAPTPV-- 60

Query: 61  VSRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLSGCGFFG 120
           +SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVL+FLRYLDQFGKTKVHL+GCGFFG
Sbjct: 61  ISRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFG 120

Query: 121 EPEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSK 180
           EPEP GPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSK
Sbjct: 121 EPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSK 180

Query: 181 ARGIPYKKKKKKKNPINPHQQGK 196
           ARGIPYKKKKKKK PIN HQQGK
Sbjct: 181 ARGIPYKKKKKKKIPINTHQQGK 199

[Close]

BLAST of Clc11G18920 vs. ExPASy TrEMBL
Match: A0A1S3CJY2 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC103501807 PE=3 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 2.6e-88
Identity = 175/202 (86.63%), Postives = 182/202 (90.10%), Query Frame = 0


Query: 1   MSSSKGKDVHEGSSSNSSSSSS-LIVVVDE-------HNNQQQQFERGEVGVAATTTIAP 60
           MSSSKGKDVHEGSSSNSSSSSS L+VVVD+       H  QQQQFERG+   AA T +  
Sbjct: 1   MSSSKGKDVHEGSSSNSSSSSSALMVVVDDQNHHHHHHQQQQQQFERGD--EAAPTPV-- 60

Query: 61  VSRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLSGCGFFG 120
           +SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVL+FLRYLDQFGKTKVHL+GCGFFG
Sbjct: 61  ISRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFG 120

Query: 121 EPEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSK 180
           EPEP GPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSK
Sbjct: 121 EPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSK 180

Query: 181 ARGIPYKKKKKKKNPINPHQQG 195
           ARGIPYKKKKKKK PIN HQQG
Sbjct: 181 ARGIPYKKKKKKKIPINTHQQG 198

[Close]

BLAST of Clc11G18920 vs. ExPASy TrEMBL
Match: A0A6J1FB04 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 GN=LOC111443674 PE=3 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 8.5e-84
Identity = 159/194 (81.96%), Postives = 170/194 (87.63%), Query Frame = 0


Query: 1   MSSSKGKDVHEGSSSNSSSSSSLIVVVDEHNNQQQQFERGEVGVAATTTIAPVSRYESQK 60
           MS+SKG DV EGSSSNSSSSSSL+ V+++ N              A T +APVSRYESQK
Sbjct: 33  MSTSKGNDVGEGSSSNSSSSSSLVAVINDRNQ------------PAATAVAPVSRYESQK 92

Query: 61  RRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLSGCGFFGEPEPPGPC 120
           RRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHL+GCGFFG+PEPPGPC
Sbjct: 93  RRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPC 152

Query: 121 TCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKARGIPYKK 180
           TCPL+QAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREV+DSQSKARGIPYKK
Sbjct: 153 TCPLKQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKK 212

Query: 181 KKKKKNPINPHQQG 195
           KKKKK P + HQ G
Sbjct: 213 KKKKKIPTHTHQPG 214

[Close]

BLAST of Clc11G18920 vs. ExPASy TrEMBL
Match: A0A6J1IH94 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=LOC111476929 PE=3 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 2.3e-81
Identity = 157/194 (80.93%), Postives = 167/194 (86.08%), Query Frame = 0


Query: 1   MSSSKGKDVHEGSSSNSSSSSSLIVVVDEHNNQQQQFERGEVGVAATTTIAPVSRYESQK 60
           MS+SKG D  EGSSSNSSSSSS + V+D+ N QQQQ               PVSRYESQK
Sbjct: 38  MSTSKGNDFGEGSSSNSSSSSSFVAVIDDRNQQQQQ-----------AVAVPVSRYESQK 97

Query: 61  RRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLSGCGFFGEPEPPGPC 120
           RRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHL+GCGFFG+PEPPGPC
Sbjct: 98  RRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPC 157

Query: 121 TCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKARGIPYKK 180
           TCPLRQAWGSLDALIGRLRAAYEENGG+SDTNPFASGAIRVYLRE++DSQSKARGIPY K
Sbjct: 158 TCPLRQAWGSLDALIGRLRAAYEENGGTSDTNPFASGAIRVYLRELKDSQSKARGIPY-K 217

Query: 181 KKKKKNPINPHQQG 195
           KKKKK P + HQ G
Sbjct: 218 KKKKKIPSHTHQPG 219

[Close]

BLAST of Clc11G18920 vs. TAIR 10
Match: AT2G42610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 245.4 bits (625), Expect = 3.9e-65
Identity = 116/150 (77.33%), Postives = 132/150 (88.00%), Query Frame = 0


Query: 38  ERGEVGVAATTTIAPV--SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYL 97
           ERG+  + ++ +  PV  SRYESQKRRDW TFGQYL+NQRPP+ +S C+ +HVLDFLRYL
Sbjct: 6   ERGKSLMESSGSEPPVTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYL 65

Query: 98  DQFGKTKVHLSGCGFFGEPEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFA 157
           DQFGKTKVH+ GC F+G+PEPP PCTCPLRQAWGSLDALIGRLRAAYEENGG  +TNPFA
Sbjct: 66  DQFGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFA 125

Query: 158 SGAIRVYLREVRDSQSKARGIPYKKKKKKK 186
           SGAIRVYLREVR+ Q+KARGIPYKKKKKKK
Sbjct: 126 SGAIRVYLREVRECQAKARGIPYKKKKKKK 155

[Close]

BLAST of Clc11G18920 vs. TAIR 10
Match: AT2G42610.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 245.4 bits (625), Expect = 3.9e-65
Identity = 116/150 (77.33%), Postives = 132/150 (88.00%), Query Frame = 0


Query: 38  ERGEVGVAATTTIAPV--SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYL 97
           ERG+  + ++ +  PV  SRYESQKRRDW TFGQYL+NQRPP+ +S C+ +HVLDFLRYL
Sbjct: 6   ERGKSLMESSGSEPPVTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYL 65

Query: 98  DQFGKTKVHLSGCGFFGEPEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFA 157
           DQFGKTKVH+ GC F+G+PEPP PCTCPLRQAWGSLDALIGRLRAAYEENGG  +TNPFA
Sbjct: 66  DQFGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFA 125

Query: 158 SGAIRVYLREVRDSQSKARGIPYKKKKKKK 186
           SGAIRVYLREVR+ Q+KARGIPYKKKKKKK
Sbjct: 126 SGAIRVYLREVRECQAKARGIPYKKKKKKK 155

[Close]

BLAST of Clc11G18920 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 224.2 bits (570), Expect = 9.3e-59
Identity = 107/174 (61.49%), Postives = 132/174 (75.86%), Query Frame = 0


Query: 14  SSNSSSSSSLIVVVDEHNNQQQQFERGEVGVAATTTIAPVSRYESQKRRDWYTFGQYLRN 73
           ++N S +++L++                 G + T  +   SRYE+QKRRDW TFGQYLRN
Sbjct: 10  TTNMSHNTNLMIAAAATTTTTSSSSSSSSGGSGTNQL---SRYENQKRRDWNTFGQYLRN 69

Query: 74  QRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLSGCGFFGEPEPPGPCTCPLRQAWGSLDA 133
            RPPL++S+C+ +HVL+FLRYLDQFGKTKVH   C FFG P PP PC CPLRQAWGSLDA
Sbjct: 70  HRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDA 129

Query: 134 LIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKARGIPYKKKKKKKNP 188
           LIGRLRAA+EENGGS +TNPF + A+R+YLREVRDSQ+KARGI Y+KKK+K+ P
Sbjct: 130 LIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPP 180

[Close]

BLAST of Clc11G18920 vs. TAIR 10
Match: AT4G18610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 224.2 bits (570), Expect = 9.3e-59
Identity = 104/135 (77.04%), Postives = 122/135 (90.37%), Query Frame = 0


Query: 52  PVSRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLSGCGFF 111
           P+SRYESQKRRDW TF QYL++Q PPL +SQ + +HVL FLRYLDQFGKTKVH   C FF
Sbjct: 34  PLSRYESQKRRDWNTFVQYLKSQNPPLMMSQFDYTHVLSFLRYLDQFGKTKVHHQACVFF 93

Query: 112 GEPEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSS-DTNPFASGAIRVYLREVRDSQ 171
           G+P+PPGPCTCPL+QAWGSLDALIGRLRAAYEE+GG S DTNPFA+G+IRV+LREVR+SQ
Sbjct: 94  GQPDPPGPCTCPLKQAWGSLDALIGRLRAAYEEHGGGSPDTNPFANGSIRVHLREVRESQ 153

Query: 172 SKARGIPYKKKKKKK 186
           +KARGIPY+KKK++K
Sbjct: 154 AKARGIPYRKKKRRK 168

[Close]

BLAST of Clc11G18920 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 223.4 bits (568), Expect = 1.6e-58
Identity = 98/137 (71.53%), Postives = 122/137 (89.05%), Query Frame = 0


Query: 51  APVSRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLSGCGF 110
           A  SRYESQKRRDW TF QYL+N +PPLA+S+C+ +HV++FL+YLDQFGKTKVH++ C +
Sbjct: 27  ATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAACPY 86

Query: 111 FGEPEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQ 170
           FG  +PP PC+CPL+QAWGSLDALIGRLRAAYEENGG  D+NPFA+ A+R+YLREVR+SQ
Sbjct: 87  FGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRESQ 146

Query: 171 SKARGIPYKKKKKKKNP 188
           +KARGIPY+KKK+K+ P
Sbjct: 147 AKARGIPYEKKKRKRPP 163

The following BLAST results are available for this feature:

BLAST of Clc11G18920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896716.1	4.3e-98	93.78	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Benincasa hispida]	[more]
XP_004146094.2	5.1e-91	89.50	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Cucumis sativus] >KGN55073.1 hypoth...	[more]
KAA0066771.1	2.4e-88	86.70	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo var. makuwa] >TYK...	[more]
XP_008463732.1	5.3e-88	86.63	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo]	[more]
XP_022937367.1	1.8e-83	81.96	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata]	[more]

BLAST of Clc11G18920 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7R3	5.5e-64	77.33	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
A2XED8	3.7e-60	73.24	Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1	[more]
Q941W1	3.7e-60	73.24	Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1	[more]
A2YG32	7.7e-58	73.88	Protein G1-like2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_24078 PE=3 SV=1	[more]
Q652I1	7.7e-58	73.88	Protein G1-like2 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L2 PE=1 SV=1	[more]

BLAST of Clc11G18920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L028	2.5e-91	89.50	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G627230 PE=3 S...	[more]
A0A5D3DWV8	1.1e-88	86.70	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3CJY2	2.6e-88	86.63	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A6J1FB04	8.5e-84	81.96	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1IH94	2.3e-81	80.93	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=...	[more]

BLAST of Clc11G18920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42610.1	3.9e-65	77.33	Protein of unknown function (DUF640)	[more]
AT2G42610.2	3.9e-65	77.33	Protein of unknown function (DUF640)	[more]
AT3G23290.2	9.3e-59	61.49	Protein of unknown function (DUF640)	[more]
AT4G18610.1	9.3e-59	77.04	Protein of unknown function (DUF640)	[more]
AT1G07090.1	1.6e-58	71.53	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 51..168 e-value: 1.6E-61 score: 206.1
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 55..182 score: 76.135872
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..190
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 169..196
None	No IPR available	PANTHER	PTHR31165:SF9	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 6	coord: 1..192
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 1..192

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G18920.2	Clc11G18920.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus