Clc11G18590 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G18590
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	50S ribosomal protein L14
Location	ClcChr11: 29109254 .. 29111968 (+)
RNA-Seq Expression	Clc11G18590
Synteny	Clc11G18590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCAAAAGAAGATATACAAATTTCTAATTTCGAATAGATTGATTAAATGAAATCTCAAAGAATCCCATAATTCAATCTATTATTCAGTAAATACATGTATATTTTTTTGAATCGTTTCATTCGCGAGGAGCTGGATGAGAAGAAACTCTCATGTCCGGTTCTGTAGTAGAGATGGAATTGAGAAATAACCATCAACTATAACCCCAAAAGAACCAGATTTCGTAAACACCATAGAGGAAGAATGAAAGGAATATCTTATCGAGGCAATTGGATTTGCTTCGGTAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCGGGACGAAAGGCAATGACACGAAATGCACGATGCGGCAGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCAGAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATGAAATGAGTGGAGTAGCTGAAAATATAGCCAGAAAAGCTATTTCAATAGCGGTATCCAAAATGCCTATACAAGCCCAATTCATTACTTCGGGATAGAAATGTAGAATCAAAGGACAGCGGTCTTTGTTTGAGATGAAAAAAAAACAATTGCAGATTTCTTTTTTTTTGGAAAAACAATATTTCTTTTTTTTTTTTTTTTACTTCGCCCTTTACATTGAAAGAAAAGATTCCAAAATAATATGATTCAACCTCGAACCCTTTTGAATGTAGCAGATAACAGTGGAGCTCGAGAATTGATGTGTATTCGAATCATAGGGGCTAGTACTCGACGATATGCTCATATTGGTGACGTTATTGTTGCTGTAATCAAGAAAGCCGTCCCAAATACACCTCTAGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGAGAAAACGGTATGATAATACAATATGATGACAATGCTGCGGTTGTTATTGATCAAGAAGGAAATCCAAAAGGAACTAGAATTTTTGGTGCGATTGCCCGAGAATTGAGACAGTTAAATTTCACTAAAATAATTTCATTAGCACCTGAAGTATTATAAGATGAGACCGTGAGATAGTTATAGTATTTGAATGAAATTAATTAGTAGATTGTGTATCACGTATATACCTTTTTAAATTCATAACTATTTAATAAAAAAGACTGTTGATTAGATCAAAATTTAAAGTAACCAATAATTTTGTTTATCATGGGTAAGGACACTATTGCTAACATAATAACCTCTATTCGCAATGCTGACATGAATAGAAAAGGAATGGTTCGAATACCATCTACTAACATCACCGAAAACATTGTTAAAATACTTTTACGAGAAGGTTTTATTGAAAACGTACGGAAACATCGGGAAAGCAACAAGGATTTTTGGGTTTTAACCCTACGACATAGAAGAAATAGGAAAGGACCATATAAAACGATTTTAAATTTAAAACGGATCAGTCGACCTGGTCTCCGAATATATTCTAACTATCAACAAATTCCTAGAATTTTAGGTGGAATGGGCATTGTAATTCTTTCTACTTCTCGGGGTATAATGACAGACCGAGAAGCTCGACTACAGGGAATCGGCGGCGAAATTTTGTGTTATATATGGTAATCTTTATGATATTCGAATTATACACAGAACTTCCCTATTTGTAAAAAAAAAAAAGAGAAGAGGTAGGTTTCTAATACCACTCCCCCTTCATTAATTGATACTTTGAAAGATGTTTCATCTGGAATGAAAGAACAAAAAAGGAGTTCTGAAGGTTTAATTACTGAATCACTTACCAATGGTATGTTTTGGGTTTGTTTAGATAATGAGGATCCAATTCTAGGTTACGTTTCAGGAAGGATTCGACATAGTTTTATCCATATACTAGGTCATAGAGAGTCAAACTTTCAGTAAGTTGTTACGATTCAACCAGAACCAAAGGGCGTATAATTTAGAGACTACGAAACAAAGGATTAGGTGAAGTAGTCTTTTCACAGGCAATATTCTTTTCTTGTAGGGATACAATTTGAAATAGAAAATTTCAAAAAACTTATTTTCTTCCAATAGGTAGATTCGGAATTAAGGTAAGGAATGAAAAATATGAAAATAAGGGCCTCCATTAGGAAAATTTGTGAAAAATGTCGCCTGATCCGTAGGCGGAGACGAATTATGGTAATTTGTTCCAATCCGAGACATAAACAAAGACAAGGATAATCTTTATAAAAAAAGGACCCCTAAAGGCCACCCACAATATACACATAAAAATCAATTAAAGGATCCGTTTTGACATGAAATGGATATATCCATATATCTCTGACTTAGATTTATGAGATGGTAAAATATGGCAAAACCCATACCAAGAATCGGTTCACGTAGAAATGGACGTATTAGCTCACGTAAAAGTACGCGTAAAATACCAAAGGGCGTTATTCATGTTCAAGCAAGTTTCAACAATACAATTGTGACTATTACAGATGTACGGGGTCGGGTAATTTCTTGGTCCTCTGCCGGTACGTGTGGATTCAAAGGTACAAGAAGAGGGACACCATTTGCCGCTCAAACCGTAGCAGGAAATGCTATTCAGGCAGTAGTGGATCAAGGTATGCAATGAGCCAAAGTTATGATAAAGGGCCCTGGTCTCAGAAGAGATGCAGCATTAAGAGCTATCCGTAG

mRNA sequence

ATCAAAAGAAGATATACAAATTTCTAATTTCGAATAGATTGATTAAATGAAATCTCAAAGAATCCCATAATTCAATCTATTATTCAGTAAATACATGTATATTTTTTTGAATCGTTTCATTCGCGAGGAGCTGGATGAGAAGAAACTCTCATGTCCGGTTCTGTAGTAGAGATGGAATTGAGAAATAACCATCAACTATAACCCCAAAAGAACCAGATTTCGTAAACACCATAGAGGAAGAATGAAAGGAATATCTTATCGAGGCAATTGGATTTGCTTCGGTAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCGGGACGAAAGGCAATGACACGAAATGCACGATGCGGCAGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCAGAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGATAACAGTGGAGCTCGAGAATTGATGTGTATTCGAATCATAGGGGCTAGTACTCGACGATATGCTCATATTGGTGACGTTATTGTTGCTGTAATCAAGAAAGCCGTCCCAAATACACCTCTAGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGAGAAAACGGTATGATAATACAATATGATGACAATGCTGCGGTTGTTATTGATCAAGAAGGAAATCCAAAAGGAACTAGAATTTTTGGTGGAATGGGCATTGTAATTCTTTCTACTTCTCGGGGTATAATGACAGACCGAGAAGCTCGACTACAGGGAATCGGCGGCGAAATTTTGTGTTATATATGATGTACGGGGTCGGGTAATTTCTTGGTCCTCTGCCGGTACGTGTGGATTCAAAGGTACAAGAAGAGGGACACCATTTGCCGCTCAAACCGTAGCAGGAAATGCTATTCAGGCAGTAGTGGATCAAGGTATGCAATGAGCCAAAGTTATGATAAAGGGCCCTGGTCTCAGAAGAGATGCAGCATTAAGAGCTATCCGTAG

Coding sequence (CDS)

ATGAAAGGAATATCTTATCGAGGCAATTGGATTTGCTTCGGTAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCGGGACGAAAGGCAATGACACGAAATGCACGATGCGGCAGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCAGAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGATAACAGTGGAGCTCGAGAATTGATGTGTATTCGAATCATAGGGGCTAGTACTCGACGATATGCTCATATTGGTGACGTTATTGTTGCTGTAATCAAGAAAGCCGTCCCAAATACACCTCTAGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGAGAAAACGGTATGATAATACAATATGATGACAATGCTGCGGTTGTTATTGATCAAGAAGGAAATCCAAAAGGAACTAGAATTTTTGGTGGAATGGGCATTGTAATTCTTTCTACTTCTCGGGGTATAATGACAGACCGAGAAGCTCGACTACAGGGAATCGGCGGCGAAATTTTGTGTTATATATGA

Protein sequence

MKGISYRGNWICFGRYAIQALEPAWITSRQIEAGRKAMTRNARCGRKIWVRIFPDKPVTLRPRETRMGSGKGSPEYWVAVVKPDNSGARELMCIRIIGASTRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKRENGMIIQYDDNAAVVIDQEGNPKGTRIFGGMGIVILSTSRGIMTDREARLQGIGGEILCYI

Homology

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BLAST of Clc11G18590 vs. NCBI nr
Match: TYK15676.1 (50S ribosomal protein L14 [Cucumis melo var. makuwa])

HSP 1 Score: 327.8 bits (839), Expect = 6.7e-86
Identity = 161/174 (92.53%), Postives = 165/174 (94.83%), Query Frame = 0


Query: 1   MKGISYRGNWICFGRYAIQALEPAWITSRQIEAGRKAMTRNARCGRKIWVRIFPDKPVTL 60
           MKGISYRGN ICFGRYAIQALEPAWITSRQIEAGR+AMTRNAR G KIWVRIFPDKPVTL
Sbjct: 1   MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60

Query: 61  RPRETRMGSGKGSPEYWVAVVKPDNSGARELMCIRIIGASTRRYAHIGDVIVAVIKKAVP 120
           RP ETRMGSGKGSPEYWVAVVKPDNSGARELMCIRIIGAS RRYAHIGDVIV VIKK VP
Sbjct: 61  RPTETRMGSGKGSPEYWVAVVKPDNSGARELMCIRIIGASNRRYAHIGDVIVPVIKKVVP 120

Query: 121 NTPLERSEVIRAVIVRTCKELKRENGMIIQYDDNAAVVIDQEGNPKGTRIFGGM 175
           NTPLERSEVI AVI+RTCKELKRENGMII+YDDNAAVVIDQEGNPKGTRIFG +
Sbjct: 121 NTPLERSEVIIAVIIRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAI 174

[Close]

BLAST of Clc11G18590 vs. NCBI nr
Match: XP_022728609.1 (uncharacterized protein LOC111284164 [Durio zibethinus] >XP_022732752.1 uncharacterized protein LOC111286845 [Durio zibethinus] >XP_022735748.1 uncharacterized protein LOC111289142 [Durio zibethinus] >XP_022735765.1 uncharacterized protein LOC111289179 [Durio zibethinus])

HSP 1 Score: 320.9 bits (821), Expect = 8.2e-84
Identity = 156/174 (89.66%), Postives = 164/174 (94.25%), Query Frame = 0


Query: 1   MKGISYRGNWICFGRYAIQALEPAWITSRQIEAGRKAMTRNARCGRKIWVRIFPDKPVTL 60
           MKGISYRGN ICFGRYA+QALEPAWITSRQIEAGR+AMTRN R G KIWVRIFPDKPVT+
Sbjct: 238 MKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTV 297

Query: 61  RPRETRMGSGKGSPEYWVAVVKPDNSGARELMCIRIIGASTRRYAHIGDVIVAVIKKAVP 120
           R  ETRMGSGKGSPEYWVAVVKPDNSGARELMCIR+IGAS RRYAHIGDVIVAVIKKAVP
Sbjct: 298 RSTETRMGSGKGSPEYWVAVVKPDNSGARELMCIRVIGASNRRYAHIGDVIVAVIKKAVP 357

Query: 121 NTPLERSEVIRAVIVRTCKELKRENGMIIQYDDNAAVVIDQEGNPKGTRIFGGM 175
             PLERSEVIRAVIVRTCKELKR+NGMII+YDDNAAVVIDQ+GNPKGTRIFG +
Sbjct: 358 KAPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQKGNPKGTRIFGAI 411

[Close]

BLAST of Clc11G18590 vs. NCBI nr
Match: XP_034910603.1 (50S ribosomal protein L14, chloroplastic [Populus alba])

HSP 1 Score: 318.9 bits (816), Expect = 3.1e-83
Identity = 156/174 (89.66%), Postives = 164/174 (94.25%), Query Frame = 0


Query: 1   MKGISYRGNWICFGRYAIQALEPAWITSRQIEAGRKAMTRNARCGRKIWVRIFPDKPVTL 60
           MKGIS RGN ICFGRYA+QALEPAWITSRQIEAGR+AMTRN R G KIWVRIFPDKPVTL
Sbjct: 1   MKGISSRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTL 60

Query: 61  RPRETRMGSGKGSPEYWVAVVKPDNSGARELMCIRIIGASTRRYAHIGDVIVAVIKKAVP 120
           RP ETRMGSGKGSPEYWVAVVKPDNSGARELMCIRIIG S RRYAHIGDVI+AVIK+AVP
Sbjct: 61  RPSETRMGSGKGSPEYWVAVVKPDNSGARELMCIRIIGTSNRRYAHIGDVIIAVIKEAVP 120

Query: 121 NTPLERSEVIRAVIVRTCKELKRENGMIIQYDDNAAVVIDQEGNPKGTRIFGGM 175
           N+PLERSEVIRAVIVRT KELKR+NGMII+YDDNAAVVIDQEGNPKGTRIFG +
Sbjct: 121 NSPLERSEVIRAVIVRTSKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAI 174

[Close]

BLAST of Clc11G18590 vs. NCBI nr
Match: KAF3449786.1 (hypothetical protein FNV43_RR05864 [Rhamnella rubrinervis])

HSP 1 Score: 318.5 bits (815), Expect = 4.1e-83
Identity = 157/175 (89.71%), Postives = 167/175 (95.43%), Query Frame = 0


Query: 1   MKGISYRGNWICFGRYAIQALEPAWITSRQIEAGRKAMTRNARCGRKIWVRIFPDKPVTL 60
           MKG++YRGN ICFGRYA+QALEPAWITSRQIEAGR+AMTRNAR G KIWVRIFPDKPVT+
Sbjct: 1   MKGMAYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTV 60

Query: 61  RPRETRMGSGKGSPEYWVAVVKP-DNSGARELMCIRIIGASTRRYAHIGDVIVAVIKKAV 120
           RP ETRMGSGKGSPE+WVAVVKP DNSGARELMCIRIIGAS RRYA IGDVIVAVIK+AV
Sbjct: 61  RPTETRMGSGKGSPEFWVAVVKPADNSGARELMCIRIIGASNRRYAQIGDVIVAVIKEAV 120

Query: 121 PNTPLERSEVIRAVIVRTCKELKRENGMIIQYDDNAAVVIDQEGNPKGTRIFGGM 175
           PNTPLERSEVIRAVIVRTCKELKR+NGMII+YDDNAAVVIDQEGNPKGTRIFG +
Sbjct: 121 PNTPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAI 175

[Close]

BLAST of Clc11G18590 vs. NCBI nr
Match: KAD7117008.1 (hypothetical protein E3N88_04276 [Mikania micrantha])

HSP 1 Score: 318.5 bits (815), Expect = 4.1e-83
Identity = 157/181 (86.74%), Postives = 166/181 (91.71%), Query Frame = 0


Query: 1   MKGISYRGNWICFGRYAIQALEPAWITSRQIEAGRKAMTRNARCGRKIWVRIFPDKPVTL 60
           MKGISYRGN ICFG+YA+QALEPAWITSRQIEAGR+AMTRNAR G KIWVRIFPDKPVT+
Sbjct: 1   MKGISYRGNTICFGKYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTV 60

Query: 61  RPRETRMGSGKGSPEYWVAVVKP-------DNSGARELMCIRIIGASTRRYAHIGDVIVA 120
           RP ETRMGSGKGSPEYWVAVVKP       DNSGARELMCIRIIGAS RRYAHIGDVIVA
Sbjct: 61  RPAETRMGSGKGSPEYWVAVVKPGRILYELDNSGARELMCIRIIGASNRRYAHIGDVIVA 120

Query: 121 VIKKAVPNTPLERSEVIRAVIVRTCKELKRENGMIIQYDDNAAVVIDQEGNPKGTRIFGG 175
           VIK AVPN PLERSEV+RAVIVRTCKELKR+NGMII+YDDNAAVVIDQEGNPKGTR+FG 
Sbjct: 121 VIKDAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGA 180

[Close]

BLAST of Clc11G18590 vs. ExPASy Swiss-Prot
Match: Q8WKP4 (50S ribosomal protein L14, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl14 PE=2 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.6e-42
Identity = 87/91 (95.60%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 84  DNSGARELMCIRIIGASTRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKR 143
           DNSGARELMCIRIIGAS RRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKR
Sbjct: 12  DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKR 71

Query: 144 ENGMIIQYDDNAAVVIDQEGNPKGTRIFGGM 175
           ENGMII+YDDNAAVVIDQEGNPKGTRIFG +
Sbjct: 72  ENGMIIRYDDNAAVVIDQEGNPKGTRIFGAI 102

[Close]

BLAST of Clc11G18590 vs. ExPASy Swiss-Prot
Match: B1A971 (50S ribosomal protein L14, chloroplastic OS=Carica papaya OX=3649 GN=rpl14 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.8e-41
Identity = 85/91 (93.41%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 84  DNSGARELMCIRIIGASTRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKR 143
           DNSGARELMCIRIIGAS RRYAHIGDVIVAVIK+AVPNTPLERSEVIRAVIVRTCKELKR
Sbjct: 12  DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELKR 71

Query: 144 ENGMIIQYDDNAAVVIDQEGNPKGTRIFGGM 175
            NGMII+YDDNAAVVIDQEGNPKGTRIFG +
Sbjct: 72  NNGMIIRYDDNAAVVIDQEGNPKGTRIFGAI 102

[Close]

BLAST of Clc11G18590 vs. ExPASy Swiss-Prot
Match: Q49KW2 (50S ribosomal protein L14, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpl14 PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 4.0e-41
Identity = 82/91 (90.11%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 84  DNSGARELMCIRIIGASTRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKR 143
           DNSGARELMCIRIIGAS RRYAHIGD+IVAVIK+A+PNTPLERSEVIRAVIVRTCKELKR
Sbjct: 12  DNSGARELMCIRIIGASNRRYAHIGDIIVAVIKEALPNTPLERSEVIRAVIVRTCKELKR 71

Query: 144 ENGMIIQYDDNAAVVIDQEGNPKGTRIFGGM 175
           +NGMII+YDDNAAVVIDQEGNPKGTR+FG +
Sbjct: 72  DNGMIIRYDDNAAVVIDQEGNPKGTRVFGAI 102

[Close]

BLAST of Clc11G18590 vs. ExPASy Swiss-Prot
Match: Q7YJU2 (50S ribosomal protein L14, chloroplastic OS=Calycanthus floridus var. glaucus OX=212734 GN=rpl14 PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 6.8e-41
Identity = 83/91 (91.21%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 84  DNSGARELMCIRIIGASTRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKR 143
           DNSGARELMCIRIIGAS RRYAHIGDVIVAVIK+AVPN PLERSEVIRAVIVRTCKELKR
Sbjct: 12  DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNMPLERSEVIRAVIVRTCKELKR 71

Query: 144 ENGMIIQYDDNAAVVIDQEGNPKGTRIFGGM 175
           +NGMII+YDDNAAVVIDQEGNPKGTR+FG +
Sbjct: 72  DNGMIIRYDDNAAVVIDQEGNPKGTRVFGAI 102

[Close]

BLAST of Clc11G18590 vs. ExPASy Swiss-Prot
Match: A0A372 (50S ribosomal protein L14, chloroplastic OS=Coffea arabica OX=13443 GN=rpl14 PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 6.8e-41
Identity = 83/91 (91.21%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 84  DNSGARELMCIRIIGASTRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKR 143
           DNSGARELMCIRIIGAS RRYAHIGDVIVAVIK+AVPN PLERSEV+RAVIVRTCKELKR
Sbjct: 12  DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNMPLERSEVVRAVIVRTCKELKR 71

Query: 144 ENGMIIQYDDNAAVVIDQEGNPKGTRIFGGM 175
           +NGMII+YDDNAAVVIDQEGNPKGTRIFG +
Sbjct: 72  DNGMIIRYDDNAAVVIDQEGNPKGTRIFGAI 102

[Close]

BLAST of Clc11G18590 vs. ExPASy TrEMBL
Match: A0A5D3CZ11 (50S ribosomal protein L14 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001730 PE=3 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 3.2e-86
Identity = 161/174 (92.53%), Postives = 165/174 (94.83%), Query Frame = 0


Query: 1   MKGISYRGNWICFGRYAIQALEPAWITSRQIEAGRKAMTRNARCGRKIWVRIFPDKPVTL 60
           MKGISYRGN ICFGRYAIQALEPAWITSRQIEAGR+AMTRNAR G KIWVRIFPDKPVTL
Sbjct: 1   MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60

Query: 61  RPRETRMGSGKGSPEYWVAVVKPDNSGARELMCIRIIGASTRRYAHIGDVIVAVIKKAVP 120
           RP ETRMGSGKGSPEYWVAVVKPDNSGARELMCIRIIGAS RRYAHIGDVIV VIKK VP
Sbjct: 61  RPTETRMGSGKGSPEYWVAVVKPDNSGARELMCIRIIGASNRRYAHIGDVIVPVIKKVVP 120

Query: 121 NTPLERSEVIRAVIVRTCKELKRENGMIIQYDDNAAVVIDQEGNPKGTRIFGGM 175
           NTPLERSEVI AVI+RTCKELKRENGMII+YDDNAAVVIDQEGNPKGTRIFG +
Sbjct: 121 NTPLERSEVIIAVIIRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAI 174

[Close]

BLAST of Clc11G18590 vs. ExPASy TrEMBL
Match: A0A6P5XJN5 (30S ribosomal protein S3, chloroplastic OS=Durio zibethinus OX=66656 GN=LOC111284164 PE=3 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 4.0e-84
Identity = 156/174 (89.66%), Postives = 164/174 (94.25%), Query Frame = 0


Query: 1   MKGISYRGNWICFGRYAIQALEPAWITSRQIEAGRKAMTRNARCGRKIWVRIFPDKPVTL 60
           MKGISYRGN ICFGRYA+QALEPAWITSRQIEAGR+AMTRN R G KIWVRIFPDKPVT+
Sbjct: 238 MKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTV 297

Query: 61  RPRETRMGSGKGSPEYWVAVVKPDNSGARELMCIRIIGASTRRYAHIGDVIVAVIKKAVP 120
           R  ETRMGSGKGSPEYWVAVVKPDNSGARELMCIR+IGAS RRYAHIGDVIVAVIKKAVP
Sbjct: 298 RSTETRMGSGKGSPEYWVAVVKPDNSGARELMCIRVIGASNRRYAHIGDVIVAVIKKAVP 357

Query: 121 NTPLERSEVIRAVIVRTCKELKRENGMIIQYDDNAAVVIDQEGNPKGTRIFGGM 175
             PLERSEVIRAVIVRTCKELKR+NGMII+YDDNAAVVIDQ+GNPKGTRIFG +
Sbjct: 358 KAPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQKGNPKGTRIFGAI 411

[Close]

BLAST of Clc11G18590 vs. ExPASy TrEMBL
Match: A0A5N6PW49 (Ribosomal_L16 domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_04276 PE=3 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 2.0e-83
Identity = 157/181 (86.74%), Postives = 166/181 (91.71%), Query Frame = 0


Query: 1   MKGISYRGNWICFGRYAIQALEPAWITSRQIEAGRKAMTRNARCGRKIWVRIFPDKPVTL 60
           MKGISYRGN ICFG+YA+QALEPAWITSRQIEAGR+AMTRNAR G KIWVRIFPDKPVT+
Sbjct: 1   MKGISYRGNTICFGKYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTV 60

Query: 61  RPRETRMGSGKGSPEYWVAVVKP-------DNSGARELMCIRIIGASTRRYAHIGDVIVA 120
           RP ETRMGSGKGSPEYWVAVVKP       DNSGARELMCIRIIGAS RRYAHIGDVIVA
Sbjct: 61  RPAETRMGSGKGSPEYWVAVVKPGRILYELDNSGARELMCIRIIGASNRRYAHIGDVIVA 120

Query: 121 VIKKAVPNTPLERSEVIRAVIVRTCKELKRENGMIIQYDDNAAVVIDQEGNPKGTRIFGG 175
           VIK AVPN PLERSEV+RAVIVRTCKELKR+NGMII+YDDNAAVVIDQEGNPKGTR+FG 
Sbjct: 121 VIKDAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGA 180

[Close]

BLAST of Clc11G18590 vs. ExPASy TrEMBL
Match: A0A5N6PBH8 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_10664 PE=3 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 2.2e-82
Identity = 155/178 (87.08%), Postives = 164/178 (92.13%), Query Frame = 0


Query: 1   MKGISYRGNWICFGRYAIQALEPAWITSRQIEAGRKAMTRNARCGRKIWVRIFPDKPVTL 60
           MKGISYRGN ICFG+YA+QALEPAWITSRQIEAGR+AMTRNAR G KIWVRIFPDKPVT+
Sbjct: 1   MKGISYRGNTICFGKYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTV 60

Query: 61  RPRETRMGSGKGSPEYWVAVVKP-------DNSGARELMCIRIIGASTRRYAHIGDVIVA 120
           RP ETRMGSGKGSPEYWVAVVKP       DNSGARELMCIRIIGAS RRYAHIGDVIVA
Sbjct: 61  RPAETRMGSGKGSPEYWVAVVKPGRILYEMDNSGARELMCIRIIGASNRRYAHIGDVIVA 120

Query: 121 VIKKAVPNTPLERSEVIRAVIVRTCKELKRENGMIIQYDDNAAVVIDQEGNPKGTRIF 172
           VIK AVPN PLERSEV+RAVIVRTCKELKR+NGMII+YDDNAAVVIDQEGNPKGTR++
Sbjct: 121 VIKDAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVY 178

[Close]

BLAST of Clc11G18590 vs. ExPASy TrEMBL
Match: A0A385G255 (Ribosomal protein L14 OS=Ammopiptanthus mongolicus OX=126911 GN=rpl14 PE=3 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 2.2e-82
Identity = 153/175 (87.43%), Postives = 165/175 (94.29%), Query Frame = 0


Query: 1   MKGISYRGNWICFGRYAIQALEPAWITSRQIEAGRKAMTRNARCGRKIWVRIFPDKPVTL 60
           MKGISYRGN ICFGRYA+QALEPAWITSRQIEAGR+AM+RN R G +IWVRIFPDKP+T+
Sbjct: 1   MKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMSRNVRRGGQIWVRIFPDKPITI 60

Query: 61  RPRETRMGSGKGSPEYWVAVVKP-DNSGARELMCIRIIGASTRRYAHIGDVIVAVIKKAV 120
           RP ETRMGSGKGSPEYWVAVVKP DNSGARELMCIRIIGAS RRYA+IGD++VAVIK+AV
Sbjct: 61  RPTETRMGSGKGSPEYWVAVVKPADNSGARELMCIRIIGASNRRYAYIGDIVVAVIKEAV 120

Query: 121 PNTPLERSEVIRAVIVRTCKELKRENGMIIQYDDNAAVVIDQEGNPKGTRIFGGM 175
           PNTPLERSEVIRAVIVRTCKELKR NGMII Y+DNAAVVIDQEGNPKGTRIFG +
Sbjct: 121 PNTPLERSEVIRAVIVRTCKELKRSNGMIIHYNDNAAVVIDQEGNPKGTRIFGAI 175

[Close]

BLAST of Clc11G18590 vs. TAIR 10
Match: ATCG00780.1 (ribosomal protein L14 )

HSP 1 Score: 167.5 bits (423), Expect = 1.1e-41
Identity = 82/91 (90.11%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 84  DNSGARELMCIRIIGASTRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKR 143
           DNSGARELMCIRIIGAS RRYAHIGDVIVAVIK+A+PNTPLERSEVIRAVIVRTCKELKR
Sbjct: 12  DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAIPNTPLERSEVIRAVIVRTCKELKR 71

Query: 144 ENGMIIQYDDNAAVVIDQEGNPKGTRIFGGM 175
            NG II+YDDNAAVVIDQEGNPKGTR+FG +
Sbjct: 72  NNGTIIRYDDNAAVVIDQEGNPKGTRVFGAI 102

[Close]

BLAST of Clc11G18590 vs. TAIR 10
Match: ATCG00790.1 (ribosomal protein L16 )

HSP 1 Score: 156.0 bits (393), Expect = 3.3e-38
Identity = 72/83 (86.75%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 1  MKGISYRGNWICFGRYAIQALEPAWITSRQIEAGRKAMTRNARCGRKIWVRIFPDKPVTL 60
          +KGIS RGN ICFGRYA+Q LEPAWITSRQIEAGR+AMTRN R G KIWVRIFPDKPVT+
Sbjct: 17 LKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTV 76

Query: 61 RPRETRMGSGKGSPEYWVAVVKP 84
          RP ETRMGSGKGSPEYWVAVVKP
Sbjct: 77 RPAETRMGSGKGSPEYWVAVVKP 99

[Close]

BLAST of Clc11G18590 vs. TAIR 10
Match: AT2G28830.1 (PLANT U-BOX 12 )

HSP 1 Score: 115.2 bits (287), Expect = 6.4e-26
Identity = 57/82 (69.51%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 2   KGISYRGNWICFGRYAIQALEPAWITSRQIEAGRKAMTRNARCGRKIWVRIFPDKPVTLR 61
           KG+S +G +IC  RYA+Q LEPAWITSRQIEAGR+AMTRN   G  + V IF DKPVT+R
Sbjct: 847 KGVSSQG-YIC-SRYALQTLEPAWITSRQIEAGRRAMTRNIGRGLTVRVHIFADKPVTVR 906

Query: 62  PRETRMGSGKGSPEYWVAVVKP 84
           P ETRMG GKG+P +WVAVVKP
Sbjct: 907 PPETRMGRGKGAPAFWVAVVKP 926

[Close]

BLAST of Clc11G18590 vs. TAIR 10
Match: AT5G46160.1 (Ribosomal protein L14p/L23e family protein )

HSP 1 Score: 71.6 bits (174), Expect = 8.1e-13
Identity = 36/96 (37.50%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 84  DNSGARELMCIRIIGASTRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKR 143
           DNSGA+++MCI+ +    ++ A +GD IVA +K+A+PN  +++  V+  V+VR   +  R
Sbjct: 58  DNSGAKKVMCIQAL--KGKKGARLGDTIVASVKEAMPNGKVKKGAVVYGVVVRAAMQRGR 117

Query: 144 ENGMIIQYDDNAAVVIDQ-------EGNPKGTRIFG 173
            +G  +++DDNA V++D        +  P GTR+FG
Sbjct: 118 VDGSEVRFDDNAVVLVDSKDKNTKTDRQPIGTRVFG 151

[Close]

BLAST of Clc11G18590 vs. TAIR 10
Match: AT5G46160.2 (Ribosomal protein L14p/L23e family protein )

HSP 1 Score: 71.6 bits (174), Expect = 8.1e-13
Identity = 36/96 (37.50%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 84  DNSGARELMCIRIIGASTRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKR 143
           DNSGA+++MCI+ +    ++ A +GD IVA +K+A+PN  +++  V+  V+VR   +  R
Sbjct: 57  DNSGAKKVMCIQAL--KGKKGARLGDTIVASVKEAMPNGKVKKGAVVYGVVVRAAMQRGR 116

Query: 144 ENGMIIQYDDNAAVVIDQ-------EGNPKGTRIFG 173
            +G  +++DDNA V++D        +  P GTR+FG
Sbjct: 117 VDGSEVRFDDNAVVLVDSKDKNTKTDRQPIGTRVFG 150

The following BLAST results are available for this feature:

BLAST of Clc11G18590 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK15676.1	6.7e-86	92.53	50S ribosomal protein L14 [Cucumis melo var. makuwa]	[more]
XP_022728609.1	8.2e-84	89.66	uncharacterized protein LOC111284164 [Durio zibethinus] >XP_022732752.1 uncharac...	[more]
XP_034910603.1	3.1e-83	89.66	50S ribosomal protein L14, chloroplastic [Populus alba]	[more]
KAF3449786.1	4.1e-83	89.71	hypothetical protein FNV43_RR05864 [Rhamnella rubrinervis]	[more]
KAD7117008.1	4.1e-83	86.74	hypothetical protein E3N88_04276 [Mikania micrantha]	[more]

BLAST of Clc11G18590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8WKP4	1.6e-42	95.60	50S ribosomal protein L14, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl14 PE=...	[more]
B1A971	1.8e-41	93.41	50S ribosomal protein L14, chloroplastic OS=Carica papaya OX=3649 GN=rpl14 PE=3 ...	[more]
Q49KW2	4.0e-41	90.11	50S ribosomal protein L14, chloroplastic OS=Eucalyptus globulus subsp. globulus ...	[more]
Q7YJU2	6.8e-41	91.21	50S ribosomal protein L14, chloroplastic OS=Calycanthus floridus var. glaucus OX...	[more]
A0A372	6.8e-41	91.21	50S ribosomal protein L14, chloroplastic OS=Coffea arabica OX=13443 GN=rpl14 PE=...	[more]

BLAST of Clc11G18590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CZ11	3.2e-86	92.53	50S ribosomal protein L14 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6P5XJN5	4.0e-84	89.66	30S ribosomal protein S3, chloroplastic OS=Durio zibethinus OX=66656 GN=LOC11128...	[more]
A0A5N6PW49	2.0e-83	86.74	Ribosomal_L16 domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_...	[more]
A0A5N6PBH8	2.2e-82	87.08	Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_10664 PE=3 SV=1	[more]
A0A385G255	2.2e-82	87.43	Ribosomal protein L14 OS=Ammopiptanthus mongolicus OX=126911 GN=rpl14 PE=3 SV=1	[more]

BLAST of Clc11G18590 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00780.1	1.1e-41	90.11	ribosomal protein L14	[more]
ATCG00790.1	3.3e-38	86.75	ribosomal protein L16	[more]
AT2G28830.1	6.4e-26	69.51	PLANT U-BOX 12	[more]
AT5G46160.1	8.1e-13	37.50	Ribosomal protein L14p/L23e family protein	[more]
AT5G46160.2	8.1e-13	37.50	Ribosomal protein L14p/L23e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000114	Ribosomal protein L16	PRINTS	PR00060	RIBOSOMALL16	coord: 8..20 score: 47.54 coord: 42..71 score: 61.53 coord: 72..101 score: 28.53 coord: 26..37 score: 66.17
IPR000114	Ribosomal protein L16	TIGRFAM	TIGR01164	TIGR01164	coord: 1..83 e-value: 2.6E-35 score: 119.2
IPR000218	Ribosomal protein L14P	SMART	SM01374	Ribosomal_L14_2	coord: 80..184 e-value: 1.0E-34 score: 131.4
IPR000218	Ribosomal protein L14P	PFAM	PF00238	Ribosomal_L14	coord: 84..173 e-value: 1.3E-33 score: 115.6
IPR000218	Ribosomal protein L14P	PANTHER	PTHR11761	50S/60S RIBOSOMAL PROTEIN L14/L23	coord: 83..174
IPR000218	Ribosomal protein L14P	HAMAP	MF_01367	Ribosomal_L14	coord: 60..201 score: 18.77458
IPR036920	Ribosomal protein L10e/L16 superfamily	GENE3D	3.90.1170.10	Ribosomal protein L10e/L16	coord: 1..82 e-value: 2.1E-35 score: 124.2
IPR036920	Ribosomal protein L10e/L16 superfamily	SUPERFAMILY	54686	Ribosomal protein L16p/L10e	coord: 1..84
IPR036853	Ribosomal protein L14 superfamily	GENE3D	2.40.150.20	Ribosomal protein L14	coord: 83..172 e-value: 7.4E-34 score: 118.4
IPR036853	Ribosomal protein L14 superfamily	SUPERFAMILY	50193	Ribosomal protein L14	coord: 83..174
IPR005745	Ribosomal protein L14P, bacterial-type	TIGRFAM	TIGR01067	TIGR01067	coord: 84..173 e-value: 6.7E-35 score: 117.6
IPR016180	Ribosomal protein L10e/L16	PFAM	PF00252	Ribosomal_L16	coord: 2..84 e-value: 1.1E-28 score: 99.9
IPR016180	Ribosomal protein L10e/L16	CDD	cd01433	Ribosomal_L16_L10e	coord: 7..83 e-value: 3.46292E-34 score: 115.667
IPR000630	Ribosomal protein S8	PFAM	PF00410	Ribosomal_S8	coord: 168..204 e-value: 2.3E-12 score: 47.0
IPR000630	Ribosomal protein S8	PROSITE	PS00053	RIBOSOMAL_S8	coord: 175..192
None	No IPR available	GENE3D	3.30.1490.10		coord: 173..203 e-value: 7.1E-13 score: 49.9
None	No IPR available	PANTHER	PTHR11761:SF28	RIBOSOMAL PROTEIN L14B/L23E-RELATED	coord: 83..174
IPR020798	Ribosomal protein L16, conserved site	PROSITE	PS00701	RIBOSOMAL_L16_2	coord: 66..77
IPR019972	Ribosomal protein L14P, conserved site	PROSITE	PS00049	RIBOSOMAL_L14	coord: 132..158
IPR035987	Ribosomal protein S8 superfamily	SUPERFAMILY	56047	Ribosomal protein S8	coord: 168..204

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G18590.1	Clc11G18590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902600	proton transmembrane transport
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008289	lipid binding
molecular_function	GO:0015078	proton transmembrane transporter activity
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome