Clc11G17640 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G17640
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Seed maturation protein
Location	ClcChr11: 28360196 .. 28360501 (+)
RNA-Seq Expression	Clc11G17640
Synteny	Clc11G17640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAGAGCAAGGACGATATCACTTACGGTGCTGCTCAAGCGAAATTATCCGAAGACGAAGCCCTAAGAGTCGCTTACAAGCACGGCACGCCGCTCGAATCGGGGAAAATTTCAGACTCGGATACCGTCGATCTCTTTTCCAGTGCGCGCAACATTTCTCGAGATACTTCTGCCGGTCGTTCTTCCGCCGCCGCTGCTCAATCAATTTCATCCAATCAGTTGCGGCGCGGAGACGATCCTAATGATGAAGGCGGGACAGGATGCGATACTGCCGATCCTTCCGCCGGCCGCCGCTTCGGTTGA

mRNA sequence

ATGGCGAAGAGCAAGGACGATATCACTTACGGTGCTGCTCAAGCGAAATTATCCGAAGACGAAGCCCTAAGAGTCGCTTACAAGCACGGCACGCCGCTCGAATCGGGGAAAATTTCAGACTCGGATACCGTCGATCTCTTTTCCAGTGCGCGCAACATTTCTCGAGATACTTCTGCCGGTCGTTCTTCCGCCGCCGCTGCTCAATCAATTTCATCCAATCAGTTGCGGCGCGGAGACGATCCTAATGATGAAGGCGGGACAGGATGCGATACTGCCGATCCTTCCGCCGGCCGCCGCTTCGGTTGA

Coding sequence (CDS)

ATGGCGAAGAGCAAGGACGATATCACTTACGGTGCTGCTCAAGCGAAATTATCCGAAGACGAAGCCCTAAGAGTCGCTTACAAGCACGGCACGCCGCTCGAATCGGGGAAAATTTCAGACTCGGATACCGTCGATCTCTTTTCCAGTGCGCGCAACATTTCTCGAGATACTTCTGCCGGTCGTTCTTCCGCCGCCGCTGCTCAATCAATTTCATCCAATCAGTTGCGGCGCGGAGACGATCCTAATGATGAAGGCGGGACAGGATGCGATACTGCCGATCCTTCCGCCGGCCGCCGCTTCGGTTGA

Protein sequence

MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKISDSDTVDLFSSARNISRDTSAGRSSAAAAQSISSNQLRRGDDPNDEGGTGCDTADPSAGRRFG

Homology

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BLAST of Clc11G17640 vs. NCBI nr
Match: XP_038900165.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC120087290 [Benincasa hispida])

HSP 1 Score: 172.9 bits (437), Expect = 1.4e-39
Identity = 91/101 (90.10%), Postives = 95/101 (94.06%), Query Frame = 0


Query: 1   MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKISDSDTVDLFSSARNISRDTSAG 60
           MAKSKDDI YGAAQAKLSEDEALRVAYKHGTPLESGKIS+SDT+DLFSSA NIS+DTSAG
Sbjct: 1   MAKSKDDIAYGAAQAKLSEDEALRVAYKHGTPLESGKISESDTIDLFSSAHNISQDTSAG 60

Query: 61  RSSAAAAQSISSNQLRRGDDPNDEGGTGCDTADPSAGRRFG 102
           R SAAAAQSISSNQ RRG D +DEGGTGCDTADPSAGRRFG
Sbjct: 61  RYSAAAAQSISSNQFRRGGDEHDEGGTGCDTADPSAGRRFG 101

[Close]

BLAST of Clc11G17640 vs. NCBI nr
Match: XP_008444288.1 (PREDICTED: uncharacterized protein LOC103487654 [Cucumis melo] >ADN33756.1 seed maturation protein [Cucumis melo subsp. melo] >KAA0052324.1 seed maturation protein [Cucumis melo var. makuwa] >TYK01884.1 seed maturation protein [Cucumis melo var. makuwa])

HSP 1 Score: 165.2 bits (417), Expect = 2.8e-37
Identity = 90/102 (88.24%), Postives = 93/102 (91.18%), Query Frame = 0


Query: 1   MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKISDSDTVDLFSSARNISRDTSAG 60
           MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKISDSDTVDLFSSA  I++DTS  
Sbjct: 1   MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKISDSDTVDLFSSAHKIAQDTSGA 60

Query: 61  RSSAAAAQSISSNQLRRGDDPND-EGGTGCDTADPSAGRRFG 102
           RSSAAAAQSISSNQ+ RG D ND E GTGCDTADPSAGRRFG
Sbjct: 61  RSSAAAAQSISSNQVHRGGDANDEEAGTGCDTADPSAGRRFG 102

[Close]

BLAST of Clc11G17640 vs. NCBI nr
Match: KAG6607969.1 (hypothetical protein SDJN03_01311, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 157.1 bits (396), Expect = 7.8e-35
Identity = 85/101 (84.16%), Postives = 94/101 (93.07%), Query Frame = 0


Query: 1   MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKISDSDTVDLFSSARNISRDTSAG 60
           MAKSKDDITYGAAQAKLSEDE+LR+AYKHGTPLESGKI+D++TVDLFSSA+NIS+D SAG
Sbjct: 33  MAKSKDDITYGAAQAKLSEDESLRIAYKHGTPLESGKIADAETVDLFSSAQNISQDRSAG 92

Query: 61  RSSAAAAQSISSNQLRRGDDPNDEGGTGCDTADPSAGRRFG 102
           RSSAAA +SI +NQLRRG D N EGGTGCDTADPSAGRR G
Sbjct: 93  RSSAAATESI-TNQLRRG-DTNSEGGTGCDTADPSAGRRLG 131

[Close]

BLAST of Clc11G17640 vs. NCBI nr
Match: KAG7037482.1 (hypothetical protein SDJN02_01109, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 157.1 bits (396), Expect = 7.8e-35
Identity = 85/101 (84.16%), Postives = 94/101 (93.07%), Query Frame = 0


Query: 1   MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKISDSDTVDLFSSARNISRDTSAG 60
           MAKSKDDITYGAAQAKLSEDE+LR+AYKHGTPLESGKI+D++TVDLFSSA+NIS+D SAG
Sbjct: 1   MAKSKDDITYGAAQAKLSEDESLRIAYKHGTPLESGKIADAETVDLFSSAQNISQDRSAG 60

Query: 61  RSSAAAAQSISSNQLRRGDDPNDEGGTGCDTADPSAGRRFG 102
           RSSAAA +SI +NQLRRG D N EGGTGCDTADPSAGRR G
Sbjct: 61  RSSAAATESI-TNQLRRG-DTNSEGGTGCDTADPSAGRRLG 99

[Close]

BLAST of Clc11G17640 vs. NCBI nr
Match: XP_023525086.1 (uncharacterized protein LOC111788801 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 155.2 bits (391), Expect = 2.9e-34
Identity = 86/101 (85.15%), Postives = 93/101 (92.08%), Query Frame = 0


Query: 1   MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKISDSDTVDLFSSARNISRDTSAG 60
           MAKSKDDITYGAAQAKLSEDEALRVAYK GTPLESGKI+D++TVDLFSSA+NIS+D SAG
Sbjct: 1   MAKSKDDITYGAAQAKLSEDEALRVAYKDGTPLESGKIADAETVDLFSSAQNISQDRSAG 60

Query: 61  RSSAAAAQSISSNQLRRGDDPNDEGGTGCDTADPSAGRRFG 102
           RSSAAA +SI +NQLRRG D N EGGTGCDTADPSAGRR G
Sbjct: 61  RSSAAATESI-TNQLRRG-DTNSEGGTGCDTADPSAGRRLG 99

[Close]

BLAST of Clc11G17640 vs. ExPASy Swiss-Prot
Match: Q9LE44 (SEED MATURATION PROTEIN 1 OS=Arabidopsis thaliana OX=3702 GN=SMP1 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.1e-14
Identity = 49/90 (54.44%), Postives = 62/90 (68.89%), Query Frame = 0


Query: 1  MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKISDSDTVDLFSSARNISRDTSAG 60
          MAK+KDDI Y  AQAKLSEDEA+RV+YKHGTPLE GKI++S+ V+LFSSA+ I +    G
Sbjct: 1  MAKNKDDIKYATAQAKLSEDEAIRVSYKHGTPLEGGKIAESEPVELFSSAQRIEK----G 60

Query: 61 RSSAAAAQSISSNQLRRGDDPNDEGGTGCD 91
          +  +AA    S +Q +   D  D  GT  D
Sbjct: 61 KEQSAA----SGDQTQIQRDIKDIKGTRTD 82

[Close]

BLAST of Clc11G17640 vs. ExPASy TrEMBL
Match: A0A5A7UAD0 (Seed maturation protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G001470 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.4e-37
Identity = 90/102 (88.24%), Postives = 93/102 (91.18%), Query Frame = 0


Query: 1   MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKISDSDTVDLFSSARNISRDTSAG 60
           MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKISDSDTVDLFSSA  I++DTS  
Sbjct: 1   MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKISDSDTVDLFSSAHKIAQDTSGA 60

Query: 61  RSSAAAAQSISSNQLRRGDDPND-EGGTGCDTADPSAGRRFG 102
           RSSAAAAQSISSNQ+ RG D ND E GTGCDTADPSAGRRFG
Sbjct: 61  RSSAAAAQSISSNQVHRGGDANDEEAGTGCDTADPSAGRRFG 102

[Close]

BLAST of Clc11G17640 vs. ExPASy TrEMBL
Match: E5GBB4 (Seed maturation protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.4e-37
Identity = 90/102 (88.24%), Postives = 93/102 (91.18%), Query Frame = 0


Query: 1   MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKISDSDTVDLFSSARNISRDTSAG 60
           MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKISDSDTVDLFSSA  I++DTS  
Sbjct: 1   MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKISDSDTVDLFSSAHKIAQDTSGA 60

Query: 61  RSSAAAAQSISSNQLRRGDDPND-EGGTGCDTADPSAGRRFG 102
           RSSAAAAQSISSNQ+ RG D ND E GTGCDTADPSAGRRFG
Sbjct: 61  RSSAAAAQSISSNQVHRGGDANDEEAGTGCDTADPSAGRRFG 102

[Close]

BLAST of Clc11G17640 vs. ExPASy TrEMBL
Match: A0A1S3BA38 (uncharacterized protein LOC103487654 OS=Cucumis melo OX=3656 GN=LOC103487654 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.4e-37
Identity = 90/102 (88.24%), Postives = 93/102 (91.18%), Query Frame = 0


Query: 1   MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKISDSDTVDLFSSARNISRDTSAG 60
           MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKISDSDTVDLFSSA  I++DTS  
Sbjct: 1   MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKISDSDTVDLFSSAHKIAQDTSGA 60

Query: 61  RSSAAAAQSISSNQLRRGDDPND-EGGTGCDTADPSAGRRFG 102
           RSSAAAAQSISSNQ+ RG D ND E GTGCDTADPSAGRRFG
Sbjct: 61  RSSAAAAQSISSNQVHRGGDANDEEAGTGCDTADPSAGRRFG 102

[Close]

BLAST of Clc11G17640 vs. ExPASy TrEMBL
Match: A0A6J1FNE9 (uncharacterized protein LOC111445841 OS=Cucurbita moschata OX=3662 GN=LOC111445841 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.4e-34
Identity = 85/101 (84.16%), Postives = 93/101 (92.08%), Query Frame = 0


Query: 1   MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKISDSDTVDLFSSARNISRDTSAG 60
           MAKSKDDITYGAAQAKLSEDE+LRVAYKHGTPLESGKI+D++TVDLFSSA+NIS+D SAG
Sbjct: 1   MAKSKDDITYGAAQAKLSEDESLRVAYKHGTPLESGKIADAETVDLFSSAQNISQDRSAG 60

Query: 61  RSSAAAAQSISSNQLRRGDDPNDEGGTGCDTADPSAGRRFG 102
           RSSAAA +SI +NQLRRG D   EGGTGCDTADPSAGRR G
Sbjct: 61  RSSAAATESI-TNQLRRG-DTTSEGGTGCDTADPSAGRRLG 99

[Close]

BLAST of Clc11G17640 vs. ExPASy TrEMBL
Match: A0A6J1IVM5 (uncharacterized protein LOC111480360 OS=Cucurbita maxima OX=3661 GN=LOC111480360 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.4e-34
Identity = 85/101 (84.16%), Postives = 92/101 (91.09%), Query Frame = 0


Query: 1   MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKISDSDTVDLFSSARNISRDTSAG 60
           MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKI+D++TVDLFSSA+NI +D SAG
Sbjct: 75  MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKIADAETVDLFSSAQNIYQDRSAG 134

Query: 61  RSSAAAAQSISSNQLRRGDDPNDEGGTGCDTADPSAGRRFG 102
           RSSAAA +SI +NQLRRG D N EGGTGCDTADPSAG R G
Sbjct: 135 RSSAAATESI-TNQLRRG-DTNSEGGTGCDTADPSAGHRLG 173

[Close]

BLAST of Clc11G17640 vs. TAIR 10
Match: AT3G12960.1 (unknown protein; Has 44 Blast hits to 44 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-15
Identity = 49/90 (54.44%), Postives = 62/90 (68.89%), Query Frame = 0


Query: 1  MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKISDSDTVDLFSSARNISRDTSAG 60
          MAK+KDDI Y  AQAKLSEDEA+RV+YKHGTPLE GKI++S+ V+LFSSA+ I +    G
Sbjct: 1  MAKNKDDIKYATAQAKLSEDEAIRVSYKHGTPLEGGKIAESEPVELFSSAQRIEK----G 60

Query: 61 RSSAAAAQSISSNQLRRGDDPNDEGGTGCD 91
          +  +AA    S +Q +   D  D  GT  D
Sbjct: 61 KEQSAA----SGDQTQIQRDIKDIKGTRTD 82

The following BLAST results are available for this feature:

BLAST of Clc11G17640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900165.1	1.4e-39	90.10	LOW QUALITY PROTEIN: uncharacterized protein LOC120087290 [Benincasa hispida]	[more]
XP_008444288.1	2.8e-37	88.24	PREDICTED: uncharacterized protein LOC103487654 [Cucumis melo] >ADN33756.1 seed ...	[more]
KAG6607969.1	7.8e-35	84.16	hypothetical protein SDJN03_01311, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7037482.1	7.8e-35	84.16	hypothetical protein SDJN02_01109, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023525086.1	2.9e-34	85.15	uncharacterized protein LOC111788801 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Clc11G17640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LE44	2.1e-14	54.44	SEED MATURATION PROTEIN 1 OS=Arabidopsis thaliana OX=3702 GN=SMP1 PE=3 SV=1	[more]

BLAST of Clc11G17640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UAD0	1.4e-37	88.24	Seed maturation protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
E5GBB4	1.4e-37	88.24	Seed maturation protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A1S3BA38	1.4e-37	88.24	uncharacterized protein LOC103487654 OS=Cucumis melo OX=3656 GN=LOC103487654 PE=...	[more]
A0A6J1FNE9	1.4e-34	84.16	uncharacterized protein LOC111445841 OS=Cucurbita moschata OX=3662 GN=LOC1114458...	[more]
A0A6J1IVM5	2.4e-34	84.16	uncharacterized protein LOC111480360 OS=Cucurbita maxima OX=3661 GN=LOC111480360...	[more]

BLAST of Clc11G17640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12960.1	1.5e-15	54.44	unknown protein; Has 44 Blast hits to 44 proteins in 14 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..101
IPR044984	SEED MATURATION PROTEIN 1	PANTHER	PTHR37732	OS08G0104400 PROTEIN	coord: 1..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G17640.1	Clc11G17640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000160	phosphorelay signal transduction system
biological_process	GO:0046777	protein autophosphorylation
biological_process	GO:0042221	response to chemical
biological_process	GO:0010162	seed dormancy process
cellular_component	GO:0005887	integral component of plasma membrane
molecular_function	GO:0009927	histidine phosphotransfer kinase activity
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0000155	phosphorelay sensor kinase activity