Clc11G16240 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGAAAACGATCAAACTTGGAGGTAGAAAAGTTCTAGTGAAGCCGTCGAACTTGGAGATAGAGAAGCTGCAACAAAGCCATCGAACTTGAAGATGAAAAAGTTGCGACGAAACTATCGAACTTGAAGACGGAGAAATAGTAGCACAACGCTCAAACTTGGAGATGGAGAAGTTGCAGCAAAGCCATCAAACTTGAAGATAAAGAACCTGTAGCGCAACCATCAATCTGGGAGATGAGAAACAACAACAAAGTCATTGAATCTTGAAGATGGAGAAAATGCATCGAGGATCACCAAGAAGAGCAAAACTCTTGGATTTTCAACAAGCGATTACCCGATTGTTGGCGTTGGAGGACACTTGAGCGGCGTCGACCACAGTGAGTTGTTTAGAAAATATGATATTGTTGTTGATCATCTGATTGATGCCGATGCAAATGGGAAGCTTTTGGATAGAAATAAATGGGGGAGGATTTGTTTTGGGTCGCTAGAGGTGGAGGAGGAGGAAGCTTTGGGATGGCTATGGCATGGAAGATAA ATGGAGAAAACGATCAAACTTGGAGATGGAGAAAATGCATCGAGGATCACCAAGAAGAGCAAAACTCTTGGATTTTCAACAAGCGATTACCCGATTGTTGGCGTTGGAGGACACTTGAGCGGCGTCGACCACAGTGAGTTGTTTAGAAAATATGATATTGTTGTTGATCATCTGATTGATGCCGATGCAAATGGGAAGCTTTTGGATAGAAATAAATGGGGGAGGATTTGTTTTGGGTCGCTAGAGGTGGAGGAGGAGGAAGCTTTGGGATGGCTATGGCATGGAAGATAA ATGGAGAAAACGATCAAACTTGGAGATGGAGAAAATGCATCGAGGATCACCAAGAAGAGCAAAACTCTTGGATTTTCAACAAGCGATTACCCGATTGTTGGCGTTGGAGGACACTTGAGCGGCGTCGACCACAGTGAGTTGTTTAGAAAATATGATATTGTTGTTGATCATCTGATTGATGCCGATGCAAATGGGAAGCTTTTGGATAGAAATAAATGGGGGAGGATTTGTTTTGGGTCGCTAGAGGTGGAGGAGGAGGAAGCTTTGGGATGGCTATGGCATGGAAGATAA MEKTIKLGDGENASRITKKSKTLGFSTSDYPIVGVGGHLSGVDHSELFRKYDIVVDHLIDADANGKLLDRNKWGRICFGSLEVEEEEALGWLWHGR Homology
BLAST of Clc11G16240 vs. NCBI nr
Match: PQM42240.1 (tetrahydrocannabinolic acid synthase-like [Prunus yedoensis var. nudiflora]) HSP 1 Score: 80.1 bits (196), Expect = 1.1e-11 Identity = 39/89 (43.82%), Postives = 51/89 (57.30%), Query Frame = 0
BLAST of Clc11G16240 vs. NCBI nr
Match: XP_038894066.1 (berberine bridge enzyme-like 18 [Benincasa hispida]) HSP 1 Score: 77.8 bits (190), Expect = 5.7e-11 Identity = 39/75 (52.00%), Postives = 46/75 (61.33%), Query Frame = 0
BLAST of Clc11G16240 vs. NCBI nr
Match: XP_024196731.1 (berberine bridge enzyme-like 21 [Rosa chinensis] >XP_040375073.1 berberine bridge enzyme-like 21 [Rosa chinensis]) HSP 1 Score: 75.1 bits (183), Expect = 3.7e-10 Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 0
BLAST of Clc11G16240 vs. NCBI nr
Match: PRQ39980.1 (putative tetrahydroberberine oxidase [Rosa chinensis]) HSP 1 Score: 75.1 bits (183), Expect = 3.7e-10 Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 0
BLAST of Clc11G16240 vs. NCBI nr
Match: KAF3632507.1 (putative serine/threonine-protein phosphatase 7 long form -like protein [Capsicum annuum]) HSP 1 Score: 73.9 bits (180), Expect = 8.2e-10 Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = 0
BLAST of Clc11G16240 vs. ExPASy Swiss-Prot
Match: Q9FKU9 (Berberine bridge enzyme-like 25 OS=Arabidopsis thaliana OX=3702 GN=At5g44390 PE=2 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 5.9e-11 Identity = 34/75 (45.33%), Postives = 46/75 (61.33%), Query Frame = 0
BLAST of Clc11G16240 vs. ExPASy Swiss-Prot
Match: Q9SVG3 (Berberine bridge enzyme-like 21 OS=Arabidopsis thaliana OX=3702 GN=At4g20840 PE=2 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 3.8e-10 Identity = 34/75 (45.33%), Postives = 45/75 (60.00%), Query Frame = 0
BLAST of Clc11G16240 vs. ExPASy Swiss-Prot
Match: Q9FZC6 (Berberine bridge enzyme-like 5 OS=Arabidopsis thaliana OX=3702 GN=FOX3 PE=3 SV=1) HSP 1 Score: 65.1 bits (157), Expect = 5.0e-10 Identity = 34/75 (45.33%), Postives = 44/75 (58.67%), Query Frame = 0
BLAST of Clc11G16240 vs. ExPASy Swiss-Prot
Match: Q9FZC8 (Berberine bridge enzyme-like 7 OS=Arabidopsis thaliana OX=3702 GN=FOX5 PE=3 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 6.5e-10 Identity = 34/75 (45.33%), Postives = 44/75 (58.67%), Query Frame = 0
BLAST of Clc11G16240 vs. ExPASy Swiss-Prot
Match: Q9FZC7 (Berberine bridge enzyme-like 6 OS=Arabidopsis thaliana OX=3702 GN=FOX4 PE=2 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 1.1e-09 Identity = 34/75 (45.33%), Postives = 43/75 (57.33%), Query Frame = 0
BLAST of Clc11G16240 vs. ExPASy TrEMBL
Match: A0A314UXU1 (Tetrahydrocannabinolic acid synthase-like OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_27987 PE=3 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 5.5e-12 Identity = 39/89 (43.82%), Postives = 51/89 (57.30%), Query Frame = 0
BLAST of Clc11G16240 vs. ExPASy TrEMBL
Match: A0A2P6R0M3 (Putative tetrahydroberberine oxidase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0431091 PE=3 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 1.8e-10 Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 0
BLAST of Clc11G16240 vs. ExPASy TrEMBL
Match: A0A2G2WKB9 (Cannabidiolic acid synthase-like 2 OS=Capsicum baccatum OX=33114 GN=CQW23_14820 PE=3 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 4.0e-10 Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = 0
BLAST of Clc11G16240 vs. ExPASy TrEMBL
Match: A0A2G3C877 (Cannabidiolic acid synthase-like 1 OS=Capsicum chinense OX=80379 GN=BC332_16141 PE=3 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 4.0e-10 Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = 0
BLAST of Clc11G16240 vs. ExPASy TrEMBL
Match: A0A1U8FCB8 (cannabidiolic acid synthase-like OS=Capsicum annuum OX=4072 GN=LOC107855838 PE=3 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 4.0e-10 Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = 0
BLAST of Clc11G16240 vs. TAIR 10
Match: AT5G44390.1 (FAD-binding Berberine family protein ) HSP 1 Score: 68.2 bits (165), Expect = 4.2e-12 Identity = 34/75 (45.33%), Postives = 46/75 (61.33%), Query Frame = 0
BLAST of Clc11G16240 vs. TAIR 10
Match: AT4G20840.1 (FAD-binding Berberine family protein ) HSP 1 Score: 65.5 bits (158), Expect = 2.7e-11 Identity = 34/75 (45.33%), Postives = 45/75 (60.00%), Query Frame = 0
BLAST of Clc11G16240 vs. TAIR 10
Match: AT1G26400.1 (FAD-binding Berberine family protein ) HSP 1 Score: 65.1 bits (157), Expect = 3.6e-11 Identity = 34/75 (45.33%), Postives = 44/75 (58.67%), Query Frame = 0
BLAST of Clc11G16240 vs. TAIR 10
Match: AT1G26420.1 (FAD-binding Berberine family protein ) HSP 1 Score: 64.7 bits (156), Expect = 4.6e-11 Identity = 34/75 (45.33%), Postives = 44/75 (58.67%), Query Frame = 0
BLAST of Clc11G16240 vs. TAIR 10
Match: AT1G26410.1 (FAD-binding Berberine family protein ) HSP 1 Score: 63.9 bits (154), Expect = 7.9e-11 Identity = 34/75 (45.33%), Postives = 43/75 (57.33%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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