Clc11G16110 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AACGAATGTAATCCCATTTGATAGGTCTGTACTGTCTTTCTTACGCTCTCGCTCCGAAGGAACAATGTCGATTTCCACCTTTTTCGGCTGCAGGATTTCGATTCCGCCATTGTTGAATTCAACTGCAAGCAAAGAAGCTCCATGCTCCGGCGGAAATTTGGTGATTGAATGCTCGTCGAGGCCGAACAAGAAGGCGACTGCACATCACATGAAAACGAGGCCACGGAAATCTCAGCCATGGGACATTCGGCGCAAACCGACTGTGTATCCTCCTCTGCCGCCTCTTCCACCGGACTGGACCTTGGTTTCATCAGTTTCCGGCGATGAAAATGTCGAGGTAGCCTCGATTTCTTCGTCTGCACAAGCACCGCTTACTAGCGAGTAACACTAGTAACTCTTCTATCTGTTCTTTTTCCTGTATTATTTGTATCATCGATGTTTTAATTGGATTTTGGTTGAGGAAATTGTGTGGCTCTTCAATCTCTGGTTTGTCAATTCTGCTATCTGGAGTTGTTTTCTTTAACGAAATGCATCTCGATTGAGTTGTTAGAATCAAGAATTGGATGTTGCCTCTAACCTGTTGGTTTGTTGCTCGGAGTAGAACCCTAATACTTTCTGTATTT AACGAATGTAATCCCATTTGATAGGTCTGTACTGTCTTTCTTACGCTCTCGCTCCGAAGGAACAATGTCGATTTCCACCTTTTTCGGCTGCAGGATTTCGATTCCGCCATTGTTGAATTCAACTGCAAGCAAAGAAGCTCCATGCTCCGGCGGAAATTTGGTGATTGAATGCTCGTCGAGGCCGAACAAGAAGGCGACTGCACATCACATGAAAACGAGGCCACGGAAATCTCAGCCATGGGACATTCGGCGCAAACCGACTGTGTATCCTCCTCTGCCGCCTCTTCCACCGGACTGGACCTTGGTTTCATCAGTTTCCGGCGATGAAAATGTCGAGGTAGCCTCGATTTCTTCGTCTGCACAAGCACCGCTTACTAGCGAGTAACACTAGTAACTCTTCTATCTGTTCTTTTTCCTGTATTATTTGTATCATCGATGTTTTAATTGGATTTTGGTTGAGGAAATTGTGTGGCTCTTCAATCTCTGGTTTGTCAATTCTGCTATCTGGAGTTGTTTTCTTTAACGAAATGCATCTCGATTGAGTTGTTAGAATCAAGAATTGGATGTTGCCTCTAACCTGTTGGTTTGTTGCTCGGAGTAGAACCCTAATACTTTCTGTATTT ATGTCGATTTCCACCTTTTTCGGCTGCAGGATTTCGATTCCGCCATTGTTGAATTCAACTGCAAGCAAAGAAGCTCCATGCTCCGGCGGAAATTTGGTGATTGAATGCTCGTCGAGGCCGAACAAGAAGGCGACTGCACATCACATGAAAACGAGGCCACGGAAATCTCAGCCATGGGACATTCGGCGCAAACCGACTGTGTATCCTCCTCTGCCGCCTCTTCCACCGGACTGGACCTTGGTTTCATCAGTTTCCGGCGATGAAAATGTCGAGGTAGCCTCGATTTCTTCGTCTGCACAAGCACCGCTTACTAGCGAGTAA MSISTFFGCRISIPPLLNSTASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVASISSSAQAPLTSE Homology
BLAST of Clc11G16110 vs. NCBI nr
Match: XP_011652886.1 (50S ribosomal protein 6, chloroplastic [Cucumis sativus]) HSP 1 Score: 200.3 bits (508), Expect = 8.4e-48 Identity = 97/106 (91.51%), Postives = 103/106 (97.17%), Query Frame = 0
BLAST of Clc11G16110 vs. NCBI nr
Match: XP_008466097.1 (PREDICTED: 50S ribosomal protein 6, chloroplastic [Cucumis melo] >KAA0038635.1 50S ribosomal protein 6 [Cucumis melo var. makuwa] >TYK31235.1 50S ribosomal protein 6 [Cucumis melo var. makuwa]) HSP 1 Score: 198.0 bits (502), Expect = 4.2e-47 Identity = 96/106 (90.57%), Postives = 101/106 (95.28%), Query Frame = 0
BLAST of Clc11G16110 vs. NCBI nr
Match: XP_023536142.1 (50S ribosomal protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 187.2 bits (474), Expect = 7.3e-44 Identity = 95/107 (88.79%), Postives = 101/107 (94.39%), Query Frame = 0
BLAST of Clc11G16110 vs. NCBI nr
Match: XP_022936242.1 (50S ribosomal protein 6, chloroplastic-like [Cucurbita moschata]) HSP 1 Score: 185.3 bits (469), Expect = 2.8e-43 Identity = 94/107 (87.85%), Postives = 100/107 (93.46%), Query Frame = 0
BLAST of Clc11G16110 vs. NCBI nr
Match: KAG6591720.1 (50S ribosomal protein 6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 184.9 bits (468), Expect = 3.6e-43 Identity = 94/107 (87.85%), Postives = 100/107 (93.46%), Query Frame = 0
BLAST of Clc11G16110 vs. ExPASy Swiss-Prot
Match: P82411 (50S ribosomal protein 6, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP6 PE=1 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 3.7e-22 Identity = 55/111 (49.55%), Postives = 73/111 (65.77%), Query Frame = 0
BLAST of Clc11G16110 vs. ExPASy Swiss-Prot
Match: P11892 (50S ribosomal protein 6, chloroplastic OS=Pisum sativum OX=3888 GN=PSRP6 PE=3 SV=1) HSP 1 Score: 96.7 bits (239), Expect = 1.7e-19 Identity = 50/83 (60.24%), Postives = 60/83 (72.29%), Query Frame = 0
BLAST of Clc11G16110 vs. ExPASy Swiss-Prot
Match: Q9FKP0 (50S ribosomal protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP6 PE=3 SV=1) HSP 1 Score: 94.0 bits (232), Expect = 1.1e-18 Identity = 50/98 (51.02%), Postives = 61/98 (62.24%), Query Frame = 0
BLAST of Clc11G16110 vs. ExPASy TrEMBL
Match: A0A0A0LHS7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G894500 PE=4 SV=1) HSP 1 Score: 200.3 bits (508), Expect = 4.1e-48 Identity = 97/106 (91.51%), Postives = 103/106 (97.17%), Query Frame = 0
BLAST of Clc11G16110 vs. ExPASy TrEMBL
Match: A0A5A7TB88 (50S ribosomal protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005220 PE=4 SV=1) HSP 1 Score: 198.0 bits (502), Expect = 2.0e-47 Identity = 96/106 (90.57%), Postives = 101/106 (95.28%), Query Frame = 0
BLAST of Clc11G16110 vs. ExPASy TrEMBL
Match: A0A1S3CQF4 (50S ribosomal protein 6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503622 PE=4 SV=1) HSP 1 Score: 198.0 bits (502), Expect = 2.0e-47 Identity = 96/106 (90.57%), Postives = 101/106 (95.28%), Query Frame = 0
BLAST of Clc11G16110 vs. ExPASy TrEMBL
Match: A0A6J1F7W7 (50S ribosomal protein 6, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442914 PE=4 SV=1) HSP 1 Score: 185.3 bits (469), Expect = 1.4e-43 Identity = 94/107 (87.85%), Postives = 100/107 (93.46%), Query Frame = 0
BLAST of Clc11G16110 vs. ExPASy TrEMBL
Match: A0A6J1IDX3 (50S ribosomal protein 6, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111476133 PE=4 SV=1) HSP 1 Score: 184.1 bits (466), Expect = 3.0e-43 Identity = 94/107 (87.85%), Postives = 100/107 (93.46%), Query Frame = 0
BLAST of Clc11G16110 vs. TAIR 10
Match: AT5G17870.1 (plastid-specific 50S ribosomal protein 6 ) HSP 1 Score: 94.0 bits (232), Expect = 7.9e-20 Identity = 50/98 (51.02%), Postives = 61/98 (62.24%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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