Clc11G15880 (gene) Watermelon (cordophanus) v2

Overview
NameClc11G15880
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionMADS-box transcription factor 23-like
LocationClcChr11: 26826202 .. 26832362 (+)
RNA-Seq ExpressionClc11G15880
SyntenyClc11G15880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAATAAATCGAGATCTGATTGGGCCACGTGTCCTCGTACGTTTGAACCCGCTAGTGGTTTTTGCCACACTGGAAAAACACCCCGAGGCCTTCAACACATGGACGCCGCAGATCCCTTTCCATAAATGGCGCTGTGCAGCTAAATGATTTGAATCCGCTTCAGTACAACGCTCCGTAGAAAAGCGTTGATTCTGTTTGATCTCACTTTGCCGTGACTCCAAACCGGCACCGCACTCATCAGCAAAGAGTAAGTTGCGATTTCTTGGAAAATTCCTTCGCATTTTCTCTTTCGTTCTTCAATGATTGCTTTTATTTTTATTTTATTTATTTTTTTAAATGTTCGTCGGTATTCATCGGAGTGTTTTCTTCTGTTTTCTTTTGGATCGCACGCCGTGAACTCTATCTATATCATTCATGTGTGTTATCGAGGAAGAACGAAGTGCAGAGAGTTCTTTTTTCTTTTTTTTTTCCTTTTTTTGCTTTGGTTACGGTTTTCGTTTTCTATCTTTGTTACTTGTGAAATTTACTGGAGTTTCGTTATTTTCTCTAACTTTCTCCGGAAAAATGAACAGAAGAACCGAGTTGCGGATCTAAGTATGGGGAGAGGCAAGATTGTAATTAGGAGGATCGATAATTCGACGAGCAGACAGGTGACTTTCTCAAAGCGTCGGAGCGGATTGCTGAAAAAGGCGAAAGAACTAGCGATCCTTTGCGACGCCGATGTTGGAGTCATCATCTTCTCCAGCACCAGCAAGCTCTATGAATACTCCAGCACCAGGTTCTATGATATTCATCTTCTGTTTCTTCTACTATTTGCCTTTATTTTCTTCTACTTTTCTTTTTTCAGTCTGAATAATTGCTCCGTTTCCGTACTTAACTATAATAGATTAATATCTAGTGCGACAAGACCTTGGTAGCATCGCCTCCACTTAATTTAACTGATTTTTATTCATTCTATTGGCGAGCGTGCAGCTTAAATCACGATTAAGACTGTATGCTTTATCGTATAAAATAAAATTTTGTGCACACTGAGAAATATAAATTTTTGAGCCATACAGTCCTTAGGTTTGAGGTCAGTCTTTATTTTATTTTGTGATTTTATGAGGACGATCAGTTCTATCAGTTGCCTGAGCTCTCTAACCGCTGAAACTTCGGTGGTGTCAGCTTTGAACAATTCCGCTTTTAAACTCGATTGGCGTATATCAAGTGACTTTAGAGTTATTATTGGCTCGTTTATGCCTTTAGGATAGACGGCCATAATTCTAATTTGTTGCTTAGTGACAATCTCGCCCTAGAGTATCGTACTTGATTTTGAGACAAGTTTGTGATGACAATAGAAATGTTGCAACATAATTCGGAGAGGTATATCATATATGTGACTTATCCGAATAGAAAGTTGCAGCTCCGTCTGGAAACATAGTTAGATCATGCAAGAAAATACATACATTCTCTTAAAAGTAGTGAGTACATTATCTCGATCGATTAATTTACAATCATTTTCATTGTAATGGACGCCAACCGAGTGAATTTGCGTTAACAATGGTTGGAAGAGTGGATTTCTGTGCTGTTTTTAGTTGAGTTGGGATCTGCACAGACTAATTGATCAGTCAATGTAGCTCATTCTAGGCCTCTTGGATTGGATAGAATAATATGGTCAACACAGTACATTATTTCATTTATAACTGTTATAATTCGACTCAAAATTATTTCTAAACTCATCCGTTTGAGTTTAATTAAGGTCCAGATCCTACATTATTTAGGGTGTAGAAATAAAAGAAGGCTTAGTTGCTGACCTCAATTCATAACTATATATATATGGTTATACATTCATACCTCCTGTAGGTTCAAATTACTTAATTATTTTCCATATTCTTAGTTTCTATTCTAAGAACAAAGAAGCATGGTTCTAGCAATAGCTATGGTCCCCAAGGATCACCACTTCTATGAAATAGGATAAAGCATGGACAGAATTAAGTTGGTCGGGCTGTCTCATATAGCCTGCATGTTGTGTGTGTGTGTGTACATTGTACCTTCTTTGGGGTGAGGGATTCGAGCAAGAATTTGGAACCTTAATATACTTCGGTTGGCCATTAAGTTGGACCGTTTAAATATCATTTCATAAGCTAATTTTATTGAATATTGGTTTTTAAACATCTTCGTTTAGTACTGTGGTCTAAATTTCACTTGAATATTTTTATTTTTTTTTATGAGTACAAGCTTTCACGAAGTATAATATTTCGTTTAAAGCTCTACATTAATGTTATTAAGGTCTTTTAGCTGATAATGCTTATTTAACTTTATCTATTTCAATAGGAAAATAATTGTTTGTTTTCCATTTTCTGTTTTTATGTAACATAGAGAAAAACCTCTTGTTATAAGAAACAGTGTATCTATCTATATATATACAGCGAAAAAGAGAGAAAAATAAATGTATATATGTGTGTAAAGGAATAGGATAGTTTCTTAGAATCTGCATATATGAAGTTCAATCGAGTACTCCTACAACACAGAAATCCCTGGCTAAGCACTACACTCATGTTTTGCGTTGTATCCACCTGACCTCATTGAAACCCGAACTCAATTGATCAATAAGATGATCAAATAATGTTTAGGTGGTAATCCTTTTCCGTCCTTCCTAAATGCCGTTTAAATCACTAAGTTGGTTCAATTGTTTTGCAAAGTCTTGTTTTGGTCAGCCTGAATCCTTGTGTTCATCATCTCTCTTATTAGAAAATACTTCAATTCATAATCATCCTTTCGTGAGCCAGTTCTCACTAATTTAGTACGTTTAGTTGTTAAAAAAAGTTATTAATAGGATTTAAATCTTAAGTTACTAACTACGTGATTTGAAATTCATTACTTATAAGTTCTTTATTTTGTTCTCCAATAACGACCTAAGTCGACCTAAGATGATTTTTAGATCCATATAAAAATGATATATAATAGATTATCGATATTTTCCCTAAAGTAATTAAAGATATTTGAGCCATGAGGACCATATTCTTAATTATTCAATAACGCAATGTACATATATTCTTATTGAGCATCTTTGAAAAGCTTAATGATAGATGGGAAGGTTCCTTCCGGGGAAGGTCTATCTTTTTTTTGGTAGCTTCCTATCCTAGGGGAGGTTGTTGAGAGGGATCATCCTTCCAACTTGATTCGCTAGAAAAAGCAGATCTATACGAGGTTGGAGCAAAGAGAAAGGTTGACGGGATAGTTAAAAAAATGAAAAAAAAAAACTTAGATGTTGACTAATGAGCTGTCAAACACACTTTCCAGCTTCCACAAAAGATTTGGCCAAATAATACTTTGTTAGGTTAGATTATAAATTAAGTCTCTATTAGAGAAGGTTAAAATTTACTTCCTACCGTTTTAAAACATAGATTTGATCCCCTATTGTTTGACAAAATTTGTAGATAACCTTCATAGTTTAATAAAATTTTCATAAATAGTCCGTTCTATAAAAATTATTTAGTTAGATTTTAGGGTTGTTTTTAAATATAGGAAAATGAACAAAAATATTTACTAATATAGCAAAATTTTACTGATTATCTACAATACACAGATAGTAGTCTATTGCCGTCTATTACATGGAAAATGTGATATTTTGTTATTGTGTATATATTTCCAGTAGTTTTGTCATTTAAAATAATTTTTATAGATTTTATCAAACAACAAGGATCAAATTTTATTTATAAGTTATAGGATTAAATTCTAACTTTCTCCAAAGTGTGACAAATTTGAATTTAACCCTTAAGAATGAAAGAATAGCGCGACAGTAATTTGTAAGTCTAGATATTAATGTTTGGAGATTAGTGAAGACATATTAGTACTTAACATGCACAAGGAAAATTTCCACGTCCGGAATTGAAATAGTTATTTTTTTTTTCTTCTTCCTTGTGCAGAAAATGATTGACAACTTTTAAGAGTAATGTTTTAAAGAGAGAATCCAAGAAATAGAAACTAGAAACCTTTTAATATGTTTGGGGCTATAAAAATAAAAATGGTCCAAATACAAAGTTTAGCCTCAAAACTGAATTTGTATCGAAAAGTTTCTTGAATTTTAAAAAACTTATCATAAGTTTTGAACTTCCAATTTTATGTCTAATATACCTATGATAGATTAGAAAAATTAAGATTAATGGATCTATATTAGGCATAAATTTACATTTTACATCTAATGGACCTAACTTTCAACTTTATGCTCAGTAAAATTCTAAAAGAAAATCAAATTAAATTAAGAATCAATTTGACATAAAATTGAATATTTCCAGACTTGTTTGACACTAATAAAAGTTTAATAACGTTTTAAGGATTGTTTAAGGTGTTGAGTTGCTTAATTTAGTCAATTGTTATTATCGTTTATAAGTTATTATAATATCTGTTTAGATCACAAACTATTTTAATTTGAGTTATAATAGTTTGTGTTTAGAATGCATATTATTTTAGTTTGAGTTACAAACGAGGATAACAAAACAATAGACAATGAACACTTTCAAATAGTTATACTATAGTAAGTGTGAGTTATAATAAATGAAAACTTCAACTATTATAATAAAAGCCTCAAATAGCCTACTCCACCTAAGGCAAATTGGGAGCCTAAATAACCCTTTGCATATTGTTTTAAAGTCAATCAAACAAAAACAAACATGAAAGGTTAGGACCTGTCAAACATTGTATTAAGCTTTGTGTTTCTTAAATTTAAGAAACACAACTTGAAACTTTAAGAACCAATCAAAATAGGATGCTATTGTTATAATAATACGTTTTACAGTATACAAGAAATAACAAGACATAAGACAGTAAAACCAATAATTACATCTCTTCTTTTTCTTTTATGTGTAAAATTATAAAGCTAAGGATGCATTAAAAATTTTATTATTTGGTTTTATCACTTGATGTGAATTATATTTTCTTCAGGTGCAACCTAAGTTATATTTATACCAAATCCCCTACATTTTCCAGTCAATTTGAACATATTTGTACGGAGTGCAACATCAAATAATTAAATAGAGAAGAACATTCAGAAGATTGGATAACTCTTTTTCAATTTCGAATTGGCTTTCAGTACTAAAAAAGAAGCTGTCACACCCTTCATTTCTAGAAAAAGTTATAGAACCACTATAGTTTTGCATTCATAGATAGACGCCTTTTAACTATAGTAAACTCCACATAAAAATATACTGACTTGACAGCCGAGTAATGAGATTAGAACCCATACTACAATAAGTATTAACAAAAAGATTCCTTTAGTTTCTTTCTTTTTATGCCAACAAGATTCCTCCCAAATTCTCAACCTCTCACTAACATTCTATAACTTGCAATGGTTACCAATAGAAATTAAGAGAAGCGCTGTCGCTACATTTTTTCCTTTTTAGTTTAACATGTATTACCCCTTTTAGTGAAAAAAATGTCGGTTGACATTTAGCACATCAAAATAAATAACTAAATAAATGTCAGTTGACATTTACTGAATAAATAACTAATATGATGTTTGAAAGTTATGTGTAGATATTGTTTCTTTAATTGTTAAAATAAAACATGGCCAAAAACTAGCAACCATAATGACAATTCTCTTTATTTTCTCCCCAAAGTTCTTCATAGCTCACTTTTGGGAACTAAACCTACTCCAAACCCTCAAACCTTTACCATTCATAAAAAAAATATTTGAAGATGATTCAGCAAAATATATATTATATGTATAAAAAAATAAAATCCTTATAGCCCAAGTTCAAAGTTACAAAACTATAAGCGGACAAAAAAAAAAAAAAAAAGAAAAGCCAAAAGCCAATATTCGAATAGACCAAAAGTAGATTGTCTATTGCCAAAACAAGTTTAACTCAGTAGTAATTGGCATAATCTTCCATCCTAAATGTCTTCCATCCTAAACAATTGTTGTAATTTAAAAAAAAAAAAAGAAAGAAAATTGTCTGTCCTGATCCCTAGATAAAACAAAAAGACGACAAAAAGACAATGTGAAGAGAAAAAAGAAACCCCATTTGAAACCACTACTTTTCAATACAGCTTCCTAAAATCATAGCCAGTAATAGTATCTAATGATACATGGTTTCACTCTTCCCCTTTGTAGCGACTATTATAAAGCTCCTCATAACAGAACAGCTACTGAATTGGAATGGCTGGTCGGGAAGTGCTGA

mRNA sequence

ATGTTAATAAATCGAGATCTGATTGGGCCACGTGTCCTCCAAAGAAAGAACCGAGTTGCGGATCTAAGTATGGGGAGAGGCAAGATTGTAATTAGGAGGATCGATAATTCGACGAGCAGACAGGTGACTTTCTCAAAGCGTCGGAGCGGATTGCTGAAAAAGGCGAAAGAACTAGCGATCCTTTGCGACGCCGATGTTGGAGTCATCATCTTCTCCAGCACCAGCAAGCTCTATGAATACTCCAGCACCAGCGACTATTATAAAGCTCCTCATAACAGAACAGCTACTGAATTGGAATGGCTGGTCGGGAAGTGCTGA

Coding sequence (CDS)

ATGTTAATAAATCGAGATCTGATTGGGCCACGTGTCCTCCAAAGAAAGAACCGAGTTGCGGATCTAAGTATGGGGAGAGGCAAGATTGTAATTAGGAGGATCGATAATTCGACGAGCAGACAGGTGACTTTCTCAAAGCGTCGGAGCGGATTGCTGAAAAAGGCGAAAGAACTAGCGATCCTTTGCGACGCCGATGTTGGAGTCATCATCTTCTCCAGCACCAGCAAGCTCTATGAATACTCCAGCACCAGCGACTATTATAAAGCTCCTCATAACAGAACAGCTACTGAATTGGAATGGCTGGTCGGGAAGTGCTGA

Protein sequence

MLINRDLIGPRVLQRKNRVADLSMGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSSTSDYYKAPHNRTATELEWLVGKC
Homology
[Close]
BLAST of Clc11G15880 vs. NCBI nr
Match: XP_023525011.1 (MADS-box transcription factor 23-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 116.7 bits (291), Expect = 1.2e-22
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 24 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 83
          MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60

Query: 84 S 85
          S
Sbjct: 61 S 61

[Close]
BLAST of Clc11G15880 vs. NCBI nr
Match: XP_016903556.1 (PREDICTED: MADS-box transcription factor 23-like isoform X5 [Cucumis melo])

HSP 1 Score: 116.7 bits (291), Expect = 1.2e-22
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 24 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 83
          MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60

Query: 84 S 85
          S
Sbjct: 61 S 61

[Close]
BLAST of Clc11G15880 vs. NCBI nr
Match: XP_011652594.1 (MADS-box transcription factor 23 isoform X4 [Cucumis sativus] >KGN60436.2 hypothetical protein Csa_002261 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 1.2e-22
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 24 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 83
          MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60

Query: 84 S 85
          S
Sbjct: 61 S 61

[Close]
BLAST of Clc11G15880 vs. NCBI nr
Match: XP_011652593.1 (MADS-box transcription factor 23 isoform X3 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 1.2e-22
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 24 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 83
          MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60

Query: 84 S 85
          S
Sbjct: 61 S 61

[Close]
BLAST of Clc11G15880 vs. NCBI nr
Match: XP_022981047.1 (MADS-box transcription factor 23-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 116.7 bits (291), Expect = 1.2e-22
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 24 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 83
          MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60

Query: 84 S 85
          S
Sbjct: 61 S 61

[Close]
BLAST of Clc11G15880 vs. ExPASy Swiss-Prot
Match: Q9SI38 (MADS-box transcription factor ANR1 OS=Arabidopsis thaliana OX=3702 GN=ANR1 PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.6e-23
Identity = 55/61 (90.16%), Postives = 59/61 (96.72%), Query Frame = 0 

Query: 24 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 83
          MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKEL+ILCDA+VGVIIFSST KLY+Y+S 
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGVIIFSSTGKLYDYASN 60

Query: 84 S 85
          S
Sbjct: 61 S 61

[Close]
BLAST of Clc11G15880 vs. ExPASy Swiss-Prot
Match: Q6EP49 (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS27 PE=2 SV=2)

HSP 1 Score: 106.7 bits (265), Expect = 1.6e-22
Identity = 53/61 (86.89%), Postives = 59/61 (96.72%), Query Frame = 0 

Query: 24 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 83
          MGRGKIVIRRIDNSTSRQVTFSKRR+G+ KKAKELAILCDA+VG++IFSST +LYEYSST
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSST 60

Query: 84 S 85
          S
Sbjct: 61 S 61

[Close]
BLAST of Clc11G15880 vs. ExPASy Swiss-Prot
Match: Q6Z6W2 (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS57 PE=1 SV=2)

HSP 1 Score: 105.5 bits (262), Expect = 3.7e-22
Identity = 51/61 (83.61%), Postives = 60/61 (98.36%), Query Frame = 0 

Query: 24 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 83
          MGRGKIVIRRIDNSTSRQVTFSKRR+GLLKKAKEL+ILCDA+VG+++FSST +LYE+SST
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSST 60

Query: 84 S 85
          +
Sbjct: 61 N 61

[Close]
BLAST of Clc11G15880 vs. ExPASy Swiss-Prot
Match: A2RVQ5 (Agamous-like MADS-box protein AGL16 OS=Arabidopsis thaliana OX=3702 GN=AGL16 PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.1e-21
Identity = 51/61 (83.61%), Postives = 59/61 (96.72%), Query Frame = 0 

Query: 24 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 83
          MGRGKI I+RI+NSTSRQVTFSKRR+GLLKKAKELAILCDA+VGVIIFSST +LY++SS+
Sbjct: 1  MGRGKIAIKRINNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGRLYDFSSS 60

Query: 84 S 85
          S
Sbjct: 61 S 61

[Close]
BLAST of Clc11G15880 vs. ExPASy Swiss-Prot
Match: Q9SZJ6 (Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana OX=3702 GN=AGL21 PE=1 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 6.9e-21
Identity = 50/61 (81.97%), Postives = 59/61 (96.72%), Query Frame = 0 

Query: 24 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 83
          MGRGKIVI+RID+STSRQVTFSKRR GL+KKAKELAILCDA+VG+IIFSST KLY+++S+
Sbjct: 1  MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASS 60

Query: 84 S 85
          S
Sbjct: 61 S 61

[Close]
BLAST of Clc11G15880 vs. ExPASy TrEMBL
Match: A0A1S4E6G1 (MADS-box transcription factor 23-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503640 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.9e-23
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 24 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 83
          MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60

Query: 84 S 85
          S
Sbjct: 61 S 61

[Close]
BLAST of Clc11G15880 vs. ExPASy TrEMBL
Match: A0A6J1ISW7 (MADS-box transcription factor 23-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111480311 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.9e-23
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 24 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 83
          MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60

Query: 84 S 85
          S
Sbjct: 61 S 61

[Close]
BLAST of Clc11G15880 vs. ExPASy TrEMBL
Match: A0A6J1IVD9 (MADS-box transcription factor 23-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111480311 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.9e-23
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 24 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 83
          MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60

Query: 84 S 85
          S
Sbjct: 61 S 61

[Close]
BLAST of Clc11G15880 vs. ExPASy TrEMBL
Match: A0A6J1J0X9 (MADS-box transcription factor 23-like isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111480311 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.9e-23
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 24 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 83
          MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60

Query: 84 S 85
          S
Sbjct: 61 S 61

[Close]
BLAST of Clc11G15880 vs. ExPASy TrEMBL
Match: A0A6J1IYC5 (MADS-box transcription factor 23-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111480311 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.9e-23
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 24 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 83
          MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 60

Query: 84 S 85
          S
Sbjct: 61 S 61

[Close]
BLAST of Clc11G15880 vs. TAIR 10
Match: AT2G14210.1 (AGAMOUS-like 44 )

HSP 1 Score: 108.2 bits (269), Expect = 4.0e-24
Identity = 55/61 (90.16%), Postives = 59/61 (96.72%), Query Frame = 0 

Query: 24 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 83
          MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKEL+ILCDA+VGVIIFSST KLY+Y+S 
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGVIIFSSTGKLYDYASN 60

Query: 84 S 85
          S
Sbjct: 61 S 61

[Close]
BLAST of Clc11G15880 vs. TAIR 10
Match: AT3G57230.1 (AGAMOUS-like 16 )

HSP 1 Score: 102.4 bits (254), Expect = 2.2e-22
Identity = 51/61 (83.61%), Postives = 59/61 (96.72%), Query Frame = 0 

Query: 24 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 83
          MGRGKI I+RI+NSTSRQVTFSKRR+GLLKKAKELAILCDA+VGVIIFSST +LY++SS+
Sbjct: 1  MGRGKIAIKRINNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGRLYDFSSS 60

Query: 84 S 85
          S
Sbjct: 61 S 61

[Close]
BLAST of Clc11G15880 vs. TAIR 10
Match: AT3G57230.2 (AGAMOUS-like 16 )

HSP 1 Score: 102.4 bits (254), Expect = 2.2e-22
Identity = 51/61 (83.61%), Postives = 59/61 (96.72%), Query Frame = 0 

Query: 24 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 83
          MGRGKI I+RI+NSTSRQVTFSKRR+GLLKKAKELAILCDA+VGVIIFSST +LY++SS+
Sbjct: 1  MGRGKIAIKRINNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGRLYDFSSS 60

Query: 84 S 85
          S
Sbjct: 61 S 61

[Close]
BLAST of Clc11G15880 vs. TAIR 10
Match: AT4G37940.1 (AGAMOUS-like 21 )

HSP 1 Score: 101.3 bits (251), Expect = 4.9e-22
Identity = 50/61 (81.97%), Postives = 59/61 (96.72%), Query Frame = 0 

Query: 24 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 83
          MGRGKIVI+RID+STSRQVTFSKRR GL+KKAKELAILCDA+VG+IIFSST KLY+++S+
Sbjct: 1  MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASS 60

Query: 84 S 85
          S
Sbjct: 61 S 61

[Close]
BLAST of Clc11G15880 vs. TAIR 10
Match: AT2G22630.1 (AGAMOUS-like 17 )

HSP 1 Score: 95.5 bits (236), Expect = 2.7e-20
Identity = 47/61 (77.05%), Postives = 58/61 (95.08%), Query Frame = 0 

Query: 24 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSST 83
          MGRGKIVI++ID+STSRQVTFSKRR GL+KKAKELAILCDA+V +IIFS+T KLY+++S+
Sbjct: 1  MGRGKIVIQKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDFASS 60

Query: 84 S 85
          S
Sbjct: 61 S 61

The following BLAST results are available for this feature:
BLAST of Clc11G15880 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023525011.11.2e-22100.00MADS-box transcription factor 23-like isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_016903556.11.2e-22100.00PREDICTED: MADS-box transcription factor 23-like isoform X5 [Cucumis melo][more]
XP_011652594.11.2e-22100.00MADS-box transcription factor 23 isoform X4 [Cucumis sativus] >KGN60436.2 hypoth... [more]
XP_011652593.11.2e-22100.00MADS-box transcription factor 23 isoform X3 [Cucumis sativus][more]
XP_022981047.11.2e-22100.00MADS-box transcription factor 23-like isoform X3 [Cucurbita maxima][more]
BLAST of Clc11G15880 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SI385.6e-2390.16MADS-box transcription factor ANR1 OS=Arabidopsis thaliana OX=3702 GN=ANR1 PE=1 ... [more]
Q6EP491.6e-2286.89MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD... [more]
Q6Z6W23.7e-2283.61MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD... [more]
A2RVQ53.1e-2183.61Agamous-like MADS-box protein AGL16 OS=Arabidopsis thaliana OX=3702 GN=AGL16 PE=... [more]
Q9SZJ66.9e-2181.97Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana OX=3702 GN=AGL21 PE=... [more]
BLAST of Clc11G15880 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S4E6G15.9e-23100.00MADS-box transcription factor 23-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC1... [more]
A0A6J1ISW75.9e-23100.00MADS-box transcription factor 23-like isoform X3 OS=Cucurbita maxima OX=3661 GN=... [more]
A0A6J1IVD95.9e-23100.00MADS-box transcription factor 23-like isoform X2 OS=Cucurbita maxima OX=3661 GN=... [more]
A0A6J1J0X95.9e-23100.00MADS-box transcription factor 23-like isoform X4 OS=Cucurbita maxima OX=3661 GN=... [more]
A0A6J1IYC55.9e-23100.00MADS-box transcription factor 23-like isoform X1 OS=Cucurbita maxima OX=3661 GN=... [more]
BLAST of Clc11G15880 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G14210.14.0e-2490.16AGAMOUS-like 44 [more]
AT3G57230.12.2e-2283.61AGAMOUS-like 16 [more]
AT3G57230.22.2e-2283.61AGAMOUS-like 16 [more]
AT4G37940.14.9e-2281.97AGAMOUS-like 21 [more]
AT2G22630.12.7e-2077.05AGAMOUS-like 17 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 26..46
score: 62.79
coord: 61..82
score: 56.66
coord: 46..61
score: 70.24
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 24..83
e-value: 8.4E-38
score: 141.6
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 33..80
e-value: 8.5E-25
score: 86.0
IPR002100Transcription factor, MADS-boxPROSITEPS00350MADS_BOX_1coord: 26..80
IPR002100Transcription factor, MADS-boxPROSITEPS50066MADS_BOX_2coord: 24..84
score: 30.739702
IPR036879Transcription factor, MADS-box superfamilyGENE3D3.40.1810.10coord: 36..99
e-value: 4.7E-24
score: 86.0
IPR036879Transcription factor, MADS-box superfamilySUPERFAMILY55455SRF-likecoord: 25..88
NoneNo IPR availablePANTHERPTHR48019:SF89AGAMOUS-LIKE MADS-BOX PROTEIN AGL16coord: 24..84
NoneNo IPR availablePANTHERPTHR48019SERUM RESPONSE FACTOR HOMOLOGcoord: 24..84
IPR033896MADS MEF2-likeCDDcd00265MADS_MEF2_likecoord: 25..84
e-value: 6.60514E-38
score: 120.35

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc11G15880.1Clc11G15880.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045944 positive regulation of transcription by RNA polymerase II
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding
molecular_function GO:0003677 DNA binding