Clc11G15330 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G15330
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	RNA-binding protein 38
Location	ClcChr11: 26231575 .. 26236156 (+)
RNA-Seq Expression	Clc11G15330
Synteny	Clc11G15330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGGGCATTATTTTGATGGGAGAGTTGGAGAGTGGATTTTAATGGTAAGACAGAGAAGCAATTCTCTCACTCACCTGTCATCTTGTATTACATCACCCACCAACCCACTTCTTCCACCTCCCTATCCAGCAAATTAGAGTTTGCACCTGTCGGATTTTCTCTCTCTCTTTCTCTCTCCTTTATTTATTTATTTTTCTATTTATCAAAATTATAACAACCACCACCAACGGCTTAAACCAGTTTCTTCTTCTTCATTTCTGTCTACAACAACTCCAAAATATGGAAGTGTGTGCAAAACAAATTGAAATCGAAATCGAAATCGAAATCGAAATTCAAAGGCAGTGAGTGGAAGGAAGTCGGAGAGAGTAGGTGTTTAGATGTTATTACATATATTTATTTCATGCAGATCAAGAATAATAGCAAATATCAAGAGGAATTATTAGAAGGTGGTGCTTTGTTTTTTGGGCCATGGCTTACCCACATTACCGATCCCAATTTGGAGATACAACTTTCACTAAAGTCTTTGTTGGTGGCCTTGCTTGGGAAACTCCCACTCACCAAATGAGATCATATTTTGAACAATTTGGTGACATTCTTGAAGCTGTGATTATCACTGATAAAAACACCTCCAAATCTAAAGGTTATGGATTTGTAAGTTCCCTCTCTCCCTCCTTTCACCATCCTCCTTTATCTTTTTTGTTTTTTTTTTTTTTGAGTTCAGTAGTGATTTAAGTAAGTTATAATATTATAGGTTACATTTCGCGACGCTGAATCTGCCAGAAGGGCTTGTGCGAATCCCAACCCCATAATCGATGGAAGACGTGCAAATTGTAACATTGCTGCATTGGGTCGCCCTCGCCCTTCCCCTCCACGAGGTTCCTAATTTTGTTTATGTCTCTACCATTTTCACCATTATTATTATTATTTTTTAAAAATTTAATCCGTATTTTATATATATATATATATATATATATATATATATATATATATATATATATTCAGGACGAGGGCAGAATAGCATAGATTCATATCAAGGAAGTACCATGCAGGCGCAGGTAGCACCATCCTACGGTGGAGTTCCGTCGCCGTTAAACCAGCCACCGTTTCCTCCGCCACCTCCACCACCTCCCCCTGTCGTGTATTCACCGTACGGGTCAGTTTATTTTAATAATGGGTATTAAAATTGAAATTAGGGGATTAAACTAAAAGTAAATACAAAATCAAAAATGGGATTAATAATTCCATAAAAAGAAGATTATGTGGGTGTAGGAATTGGGTATGATCAGAAACACATGGACCCATGTGGGTCTTCATGCAACCCTTTCCTTATCTTAATTATTATAACTGCATATATCTCGTCCATTCTTCTTACACCTCTTTGTAACTTTTAAAAGCAAAAGATAAAAATTTTCCATCACTCAAAATTAACCATGCTTCAAAACTTTATTTTTATATATATATATATTTACAATGGGTTCCATAAACTAAAATAATATTTATACTTTAATTTCTTTTTTCAATCTAAATGAGTGTGTGATAATTATATGCTTCAATTTAAGCAAATTTTTCATTTCTAATTACGTGAGATTTTGTTTATGTAACGGCTTAATGGTTTTAAAAAAGAAAAGAAAAAGAGTTTAGTTGCACCATTTTAGATTTAATATTTTGGGCTTGATTTGATGTACCCAATTGATTTTATTCCCACAATTTTCAAGATTTTTTCATGCATTTCCAGAATTACATATTACACTCCATAATTCCAAACAATTACTCAGTTACATACATTAAGATTATTAAAAATTACAAAGAAAACAAAAGTGTCCTTTTGTAAAGGGTTAGATAGTTTCTTGGTTTTTGAGTATTATCCTGAATGTGGTCATAATGAGTCAAAAACTATAATCACTGTCATTTCTCTGTCAAATTTTTTTACCTGAACTACTGACAATATAGAAAGAAACCAAACAGCAGGTCCTCCCCACCCACCAATCAACAAACCAAAAAACCACTACACAACTTTAAAACAAAACTCAGTCCCATTTATGGTAAATTCTTGATAAAAACAACAGAAACAACAATTAATTCTGAAACCAACTTCTTGTGTTATTTGTTTTGATTTTGCAGATACCCAGCTTACAATCCAGATTATGGATACCATCATCACCAAGTTAGCCTCCTTTTACTTCTTTAACATCATACACTATATATATATATATATATATTTTTTGTTGCGGCATTTCTTCAAACAGTTGTTAGGCATAAACCATAACTGATAAGAAAGGATTGAATTTGAACAGGCAGTGTACAACCCACAAATTCAACAGCCACAAATGTATCAACAATCCCCATATTATTATGGGTATTCCTTACAATCTTCAAGAGGAACATTTCCCAGTCCTTCACAATCGCATCATCCTCGGCTAGTACTGCCTCCTTCTTATGTTTACTATCCTACAGCTACTACTACTCAATTTGAGACGTCCTTCAATTATCCTCCTCCTCTCATACGACACCGTTTTCCCTCTACAGGTACATATTAATGCACAATTTCTTCAATTTAGTTATAAATAAAAGAAAAAACATACATAAATCTAACCATAATAGATAAATAGATAAAACATATTTATATTAACAACCGTTCTAAATATAGTAATTAAACTCAAAATATTTGTATATATAACACAATGCCAAAGAATTTATGAGGATATATCCATATTAATATTAAGGGTCTATTAGAGTCTACAGCTTATTGTGTTAGATTAGTCGAAGTGCGAGCAAGACGTCGTTGGTAGGAACATTCAAAAATATATATAAAAAAATAAAAAAGTAGAAAAAGAAAGAGGTGGGGGCCATGTGGGGGAAAGGAGGTAAAGGCATGTGAGTGAGCTGTGTGGGGCAATGAAATGGTTGAAAGGAAATTGATGACAGAGTAGCATTTCCATTATATAGACAGCTACTGCACTCTCACCTGTATTTCCATGTGTGGTTCAGTTTCCCAAACTTATTACACTATTTTCTCAAACTAACCCTTTTTAAATCTCTCCTCTATTTTTAACCCTTTTTCTTTTTCTTTTTTTTTTCTTTTCTTTTTAAATTTTTCAACTCTCCCTCCCTTTTTGTTCCAACCATTATTCATTGAAGGCTAGTATAATGTGGATATTGAAAAAACATATCTAAGACTTTGTATTAAAAGTCAGCCACATTGTGTTGATCCTGCTCCATAATGCACACTACTTGAAATATCCCTATTAAGTTAATGTTAGAACTTACTTATGGTAGCTTTATATAACATCATTCTTCATGAGATGTGTTTACCTTAGAAGAATTAAGATTTGTTTCAGGCATTGAGTTAGTTATTATAGTCTGTGTTTATTTGGATTACAAATAAGGAGAGATGGTGGTTACAAAATAATAAACATTTTGACTACAGTGACAAAGTGTGGGTTATAATAATGAGGCATTTACAAATATATAAATCAAGTCAAAGTATTAGTAAATATAACAAAATATAGATCTAACTCTTGGAGTCTATCTATGGTAAATTGTATGGCTAATAAGAGTCTATTATTGATCGTTTTGTTATAGTTTATCTTATTATAATAAAGTATGAGGGGCCCACTTGGATACTATAGGGTAAAATATAATTTTACATTAGTAGCCTAACATTCAAATAAATCTTAATAATTGGTTAGGTTTAATTATGCATATTTCTTCTTTCTTGTTTTCCATTTTGGTAGAGTAGACCCAAATGTATAGCTGTGTCCAGCTGGGTTTCAAGATGGACCACTTTCAAATTCTAAAATTCCAACCTTTTTTTCTTCAAATGTCTCATCAAAGAAACTTACTTGCATTCCAAGTTAGAATTTCATAAATTACATTCATATTATAAATAAATAAATAAATAAATAAATAAAAGTGAAAAATAATATGTAAATAAAGTATATTAATGGTGTGGATTTCAGATTCACAGCCATCACAACAAACTCCTACAGAAGCTGAAGCTGGAGGTACTTCTGAAAGCCCAACCACTTGAAAGAGTAAGAATCAAGAAGAAGCCATATTCATAATTCAAAAAAAAAAGAAAAAAAAAACAAACAAAACAAACCAAAATTATTATTGGTTCCATTTCTCATGGAAAAGAAAAAGGGTGGAGATAGAAAATTGTATAAAGTTGACAACTTGATGGATTTGACATTCTCTCTTTGAGATCCTCCAATTCTTTTCTCCTTTTCACCCATTTTTATCTCTGCTTCAACTCTTGCAGAGGTTGAAGGTCAATTTTTAGAGACAATCCATCCTTTTTTTTTTTCACCCTTTTTATTTCCATTTCCCTTCAACTTTACCTAATCCACAACCCCTACTTTTTCTTTTTTCTTTTTTCTTTTTATATCAAGTTTATTGTATTTGGTGTTACTATTAATCCCATGTTTGGTTTAGGGAAGATATGGGATTAATTAATTTATTAATCGAACTATTAATTGATGTAGGTGACACTTTTTTTGGTCTTATTGGGAATGTTTATGGCTTACAATTAAGGGAGTTAGGTTGTTGAATTTGATAATAAATGTACTACACTCAACTTGCA

mRNA sequence

GGGGGCATTATTTTGATGGGAGAGTTGGAGAGTGGATTTTAATGGTAAGACAGAGAAGCAATTCTCTCACTCACCTGTCATCTTGTATTACATCACCCACCAACCCACTTCTTCCACCTCCCTATCCAGCAAATTAGAGTTTGCACCTGTCGGATTTTCTCTCTCTCTTTCTCTCTCCTTTATTTATTTATTTTTCTATTTATCAAAATTATAACAACCACCACCAACGGCTTAAACCAGTTTCTTCTTCTTCATTTCTGTCTACAACAACTCCAAAATATGGAAGTGTGTGCAAAACAAATTGAAATCGAAATCGAAATCGAAATCGAAATTCAAAGGCAGTGAGTGGAAGGAAGTCGGAGAGAGTAGGTGTTTAGATGTTATTACATATATTTATTTCATGCAGATCAAGAATAATAGCAAATATCAAGAGGAATTATTAGAAGGTGGTGCTTTGTTTTTTGGGCCATGGCTTACCCACATTACCGATCCCAATTTGGAGATACAACTTTCACTAAAGTCTTTGTTGGTGGCCTTGCTTGGGAAACTCCCACTCACCAAATGAGATCATATTTTGAACAATTTGGTGACATTCTTGAAGCTGTGATTATCACTGATAAAAACACCTCCAAATCTAAAGGTTATGGATTTGTTACATTTCGCGACGCTGAATCTGCCAGAAGGGCTTGTGCGAATCCCAACCCCATAATCGATGGAAGACGTGCAAATTGTAACATTGCTGCATTGGGTCGCCCTCGCCCTTCCCCTCCACGAGGACGAGGGCAGAATAGCATAGATTCATATCAAGGAAGTACCATGCAGGCGCAGGTAGCACCATCCTACGGTGGAGTTCCGTCGCCGTTAAACCAGCCACCGTTTCCTCCGCCACCTCCACCACCTCCCCCTGTCGTGTATTCACCGTACGGATACCCAGCTTACAATCCAGATTATGGATACCATCATCACCAAGCAGTGTACAACCCACAAATTCAACAGCCACAAATGTATCAACAATCCCCATATTATTATGGGTATTCCTTACAATCTTCAAGAGGAACATTTCCCAGTCCTTCACAATCGCATCATCCTCGGCTAGTACTGCCTCCTTCTTATGTTTACTATCCTACAGCTACTACTACTCAATTTGAGACGTCCTTCAATTATCCTCCTCCTCTCATACGACACCGTTTTCCCTCTACAGACAGCTACTGCACTCTCACCTGTATTTCCATTTTATCTTATTATAATAAAATTCACAGCCATCACAACAAACTCCTACAGAAGCTGAAGCTGGAGGTACTTCTGAAAGCCCAACCACTTGAAAGAGTAAGAATCAAGAAGAAGCCATATTCATAATTCAAAAAAAAAAGAAAAAAAAAACAAACAAAACAAACCAAAATTATTATTGGTTCCATTTCTCATGGAAAAGAAAAAGGGTGGAGATAGAAAATTGTATAAAGTTGACAACTTGATGGATTTGACATTCTCTCTTTGAGATCCTCCAATTCTTTTCTCCTTTTCACCCATTTTTATCTCTGCTTCAACTCTTGCAGAGGTTGAAGGTCAATTTTTAGAGACAATCCATCCTTTTTTTTTTTCACCCTTTTTATTTCCATTTCCCTTCAACTTTACCTAATCCACAACCCCTACTTTTTCTTTTTTCTTTTTTCTTTTTATATCAAGTTTATTGTATTTGGTGTTACTATTAATCCCATGTTTGGTTTAGGGAAGATATGGGATTAATTAATTTATTAATCGAACTATTAATTGATGTAGGTGACACTTTTTTTGGTCTTATTGGGAATGTTTATGGCTTACAATTAAGGGAGTTAGGTTGTTGAATTTGATAATAAATGTACTACACTCAACTTGCA

Coding sequence (CDS)

ATGGCTTACCCACATTACCGATCCCAATTTGGAGATACAACTTTCACTAAAGTCTTTGTTGGTGGCCTTGCTTGGGAAACTCCCACTCACCAAATGAGATCATATTTTGAACAATTTGGTGACATTCTTGAAGCTGTGATTATCACTGATAAAAACACCTCCAAATCTAAAGGTTATGGATTTGTTACATTTCGCGACGCTGAATCTGCCAGAAGGGCTTGTGCGAATCCCAACCCCATAATCGATGGAAGACGTGCAAATTGTAACATTGCTGCATTGGGTCGCCCTCGCCCTTCCCCTCCACGAGGACGAGGGCAGAATAGCATAGATTCATATCAAGGAAGTACCATGCAGGCGCAGGTAGCACCATCCTACGGTGGAGTTCCGTCGCCGTTAAACCAGCCACCGTTTCCTCCGCCACCTCCACCACCTCCCCCTGTCGTGTATTCACCGTACGGATACCCAGCTTACAATCCAGATTATGGATACCATCATCACCAAGCAGTGTACAACCCACAAATTCAACAGCCACAAATGTATCAACAATCCCCATATTATTATGGGTATTCCTTACAATCTTCAAGAGGAACATTTCCCAGTCCTTCACAATCGCATCATCCTCGGCTAGTACTGCCTCCTTCTTATGTTTACTATCCTACAGCTACTACTACTCAATTTGAGACGTCCTTCAATTATCCTCCTCCTCTCATACGACACCGTTTTCCCTCTACAGACAGCTACTGCACTCTCACCTGTATTTCCATTTTATCTTATTATAATAAAATTCACAGCCATCACAACAAACTCCTACAGAAGCTGAAGCTGGAGGTACTTCTGAAAGCCCAACCACTTGAAAGAGTAAGAATCAAGAAGAAGCCATATTCATAA

Protein sequence

MAYPHYRSQFGDTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQNSIDSYQGSTMQAQVAPSYGGVPSPLNQPPFPPPPPPPPPVVYSPYGYPAYNPDYGYHHHQAVYNPQIQQPQMYQQSPYYYGYSLQSSRGTFPSPSQSHHPRLVLPPSYVYYPTATTTQFETSFNYPPPLIRHRFPSTDSYCTLTCISILSYYNKIHSHHNKLLQKLKLEVLLKAQPLERVRIKKKPYS

Homology

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BLAST of Clc11G15330 vs. NCBI nr
Match: XP_038897135.1 (RNA-binding protein 38 [Benincasa hispida])

HSP 1 Score: 435.3 bits (1118), Expect = 4.3e-118
Identity = 217/253 (85.77%), Postives = 227/253 (89.72%), Query Frame = 0


Query: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAYPHYRSQFGDTTFTKVFVGGLAWETPT  MR+YFEQFGDILEAVIITDKNTSKSKGYG
Sbjct: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDLMRTYFEQFGDILEAVIITDKNTSKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQNSIDSYQGSTMQAQ 120
           FVTFRDAESARRACAN NPIIDGRRANCNIAALGRPRPSPPRGRGQ+S++ YQGSTMQ Q
Sbjct: 61  FVTFRDAESARRACANANPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQVQ 120

Query: 121 VAPSYGGVPSPLNQPPFPPPPPPPPPVVYSPYGYPAYNPDYGYHHHQAVYNPQIQQPQMY 180
             PSYGGVPSPLNQPP PPPPPPPPP+VYSPYGYPAY+PDYGY HHQAVYNPQ+QQPQ+Y
Sbjct: 121 ATPSYGGVPSPLNQPPLPPPPPPPPPIVYSPYGYPAYSPDYGYQHHQAVYNPQVQQPQIY 180

Query: 181 QQSPYYYGYSLQSSRGTFPSPSQSHHPRLVLPPSYVYYP------TATTTQFE-TSFNYP 240
           QQSPY+YGYSLQS RGTF +PSQSHHPRLVLPPSYVYYP       A   QFE  S NY 
Sbjct: 181 QQSPYFYGYSLQSPRGTFHNPSQSHHPRLVLPPSYVYYPPPSPTAAAAAAQFEAASINY- 240

Query: 241 PPLIRHRFPSTDS 247
           PPLIRHRF STDS
Sbjct: 241 PPLIRHRFSSTDS 252

[Close]

BLAST of Clc11G15330 vs. NCBI nr
Match: XP_004136431.1 (RNA-binding protein 38 [Cucumis sativus] >KGN60219.1 hypothetical protein Csa_001640 [Cucumis sativus])

HSP 1 Score: 416.4 bits (1069), Expect = 2.1e-112
Identity = 215/253 (84.98%), Postives = 227/253 (89.72%), Query Frame = 0


Query: 3   YPHYRSQFGDTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYGFV 62
           YPHYRSQFGDTTFTKVFVGGLAWETPT QM++YFEQFGDILEAVIITDKNTSKSKGYGFV
Sbjct: 4   YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFV 63

Query: 63  TFRDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQNSIDSYQGSTMQAQVA 122
           TFRD ESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQ+S++ YQGSTMQAQ  
Sbjct: 64  TFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQAT 123

Query: 123 PSYGGVPSPLNQPPFPPPPPPPPPVVYSPYGYPAYNPDYGY-HHHQAVYNPQIQQPQMYQ 182
           PSYGGVPSPLNQPP PPPPPP PPVVYSPYGYPAY+PDYGY HHHQAVYNPQ+QQPQMYQ
Sbjct: 124 PSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQPQMYQ 183

Query: 183 QSPYYYGYSLQSSRG-TFPSPSQSH-HPRLVLPPSYVYY-PTATTTQFE-TSFNYP---- 242
           Q+PYYYGY   SSRG TFP+PSQSH HPRL+LPPSYVYY P     QFE +SFNYP    
Sbjct: 184 QTPYYYGY---SSRGTTFPNPSQSHQHPRLLLPPSYVYYPPPPPPPQFEPSSFNYPPQPQ 243

Query: 243 PPLIRHRFPSTDS 247
           P +IRHRF STDS
Sbjct: 244 PQIIRHRFSSTDS 253

[Close]

BLAST of Clc11G15330 vs. NCBI nr
Match: XP_022152706.1 (RNA-binding protein 38 [Momordica charantia])

HSP 1 Score: 380.2 bits (975), Expect = 1.6e-101
Identity = 197/254 (77.56%), Postives = 214/254 (84.25%), Query Frame = 0


Query: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAY HYRSQFGDTTFTKVFVGGLAWETPT +MR YFEQFG+ILEAVIITDKNT+KSKGYG
Sbjct: 1   MAYAHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTAKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQNSIDSYQGSTMQAQ 120
           FVTFRD ESARRACANPNP+IDGRRANCNIAALGRPRPSPPRGR Q  I+ YQGSTMQA 
Sbjct: 61  FVTFRDPESARRACANPNPVIDGRRANCNIAALGRPRPSPPRGRAQGGINPYQGSTMQA- 120

Query: 121 VAPSYGGVPSPLNQPPFPPPPPPPPPVVYSPYGYPAYNPDYGYHHHQAVYNPQIQQPQMY 180
             PSY GVP+PLNQPP PP PPPPPPVVYSPYGYP+Y+PDYGY H QAVYNPQ+QQPQ Y
Sbjct: 121 -TPSYSGVPAPLNQPPLPPAPPPPPPVVYSPYGYPSYSPDYGY-HPQAVYNPQVQQPQYY 180

Query: 181 QQSPYYYGYSLQSSRGTFP-SPSQSHHPRLVLPPSYVYYPTATTT---QFETSFNY---- 240
            QSPY YGYS+QS R TF  +P QSHH R  +PPSY+YYP A  +   QFE S ++    
Sbjct: 181 HQSPYLYGYSVQSPRATFSNAPPQSHHHR--VPPSYLYYPAAAPSPHAQFEPSSSFSNYP 240

Query: 241 PPPLIRHRFPSTDS 247
           PPPL+RHRF STDS
Sbjct: 241 PPPLLRHRFSSTDS 249

[Close]

BLAST of Clc11G15330 vs. NCBI nr
Match: KAG6591668.1 (putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 379.8 bits (974), Expect = 2.2e-101
Identity = 196/250 (78.40%), Postives = 208/250 (83.20%), Query Frame = 0


Query: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAYPHYRSQFGDTTFTKVFVGGLAWETPT +MR YFEQFGDILEAVIITDKNTSKSKGYG
Sbjct: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQNSIDSYQGSTMQAQ 120
           FVTFRDAESARRACANPNP+IDGRRANCNIAA+GRPRPSPPRGRGQ  ++ YQGSTMQA 
Sbjct: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQA- 120

Query: 121 VAPSYGGVPSPLNQPPFPPPPPPPPPVVYSPYGYPAYNPDYGYHHHQAVYNPQIQQPQMY 180
            APSY GVP PLNQPP    PPPPPPVVYSPYGYP Y PDYGYHH    ++   QQP   
Sbjct: 121 -APSYSGVPPPLNQPPL---PPPPPPVVYSPYGYPTYTPDYGYHHQHYQHH---QQP--- 180

Query: 181 QQSPYYYGYSLQSSRGTFPSPSQSHHPRLVLPPSYVYYP----TATTTQFETSFNYPPPL 240
             +PY+YGYSLQS RG FPSPSQSH PR+ +PP YVYYP     A   QFE SF+YPPPL
Sbjct: 181 VYNPYFYGYSLQSPRGAFPSPSQSHQPRVAVPP-YVYYPPPAAAAAAAQFEGSFSYPPPL 238

Query: 241 IRHRFPSTDS 247
           IRHRF STDS
Sbjct: 241 IRHRFASTDS 238

[Close]

BLAST of Clc11G15330 vs. NCBI nr
Match: KAG7024550.1 (putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 379.4 bits (973), Expect = 2.8e-101
Identity = 196/251 (78.09%), Postives = 208/251 (82.87%), Query Frame = 0


Query: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAYPHYRSQFGDTTFTKVFVGGLAWETPT +MR YFEQFGDILEAVIITDKNTSKSKGYG
Sbjct: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQNSIDSYQGSTMQAQ 120
           FVTFRDAESARRACANPNP+IDGRRANCNIAA+GRPRPSPPRGRGQ  ++ YQGSTMQA 
Sbjct: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQA- 120

Query: 121 VAPSYGGVPSPLNQPPFPPPPPPPPPVVYSPYGYPAYNPDYGYHHHQAVYNPQIQQPQMY 180
            APSY GVP PLNQPP    PPPPPPVVYSPYGYP Y PDYGYHH    ++   QQP   
Sbjct: 121 -APSYSGVPPPLNQPPL---PPPPPPVVYSPYGYPTYTPDYGYHHQHYQHH---QQP--- 180

Query: 181 QQSPYYYGYSLQSSRGTFPSPSQSHHPRLVLPPSYVYYP-----TATTTQFETSFNYPPP 240
             +PY+YGYSLQS RG FPSPSQSH PR+ +PP YVYYP      A   QFE SF+YPPP
Sbjct: 181 VYNPYFYGYSLQSPRGAFPSPSQSHQPRVAVPP-YVYYPPPAAAAAAAAQFEGSFSYPPP 239

Query: 241 LIRHRFPSTDS 247
           LIRHRF STDS
Sbjct: 241 LIRHRFASTDS 239

[Close]

BLAST of Clc11G15330 vs. ExPASy Swiss-Prot
Match: Q5ZJX4 (RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.0e-25
Identity = 56/87 (64.37%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 12 DTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESAR 71
          DTTFTK+FVGGL + T    +R YFE FGDI EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 7  DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72 RACANPNPIIDGRRANCNIAALG-RPR 98
          RAC +PNPIIDGR+AN N+A LG +PR
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAKPR 93

[Close]

BLAST of Clc11G15330 vs. ExPASy Swiss-Prot
Match: Q6GQD3 (RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.4e-25
Identity = 56/91 (61.54%), Postives = 68/91 (74.73%), Query Frame = 0


Query: 12  DTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESAR 71
           DTT+TK+FVGGL + T    +R YFE FGDI EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72  RACANPNPIIDGRRANCNIAALG-RPRPSPP 102
           RAC +PNPIIDGR+AN N+A LG +PR   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRIMQP 97

[Close]

BLAST of Clc11G15330 vs. ExPASy Swiss-Prot
Match: D3Z4I3 (RNA-binding protein 24 OS=Mus musculus OX=10090 GN=Rbm24 PE=1 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.5e-25
Identity = 56/91 (61.54%), Postives = 68/91 (74.73%), Query Frame = 0


Query: 12  DTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESAR 71
           DTT+TK+FVGGL + T    +R YFE FGDI EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72  RACANPNPIIDGRRANCNIAALG-RPRPSPP 102
           RAC +PNPIIDGR+AN N+A LG +PR   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRIMQP 97

[Close]

BLAST of Clc11G15330 vs. ExPASy Swiss-Prot
Match: Q76LC6 (RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 9.9e-25
Identity = 55/91 (60.44%), Postives = 68/91 (74.73%), Query Frame = 0


Query: 12  DTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESAR 71
           DTT+TK+FVGGL + T    +R YFE FG+I EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAD 66

Query: 72  RACANPNPIIDGRRANCNIAALG-RPRPSPP 102
           RAC +PNPIIDGR+AN N+A LG +PR   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRVMQP 97

[Close]

BLAST of Clc11G15330 vs. ExPASy Swiss-Prot
Match: Q9BX46 (RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.3e-24
Identity = 55/91 (60.44%), Postives = 68/91 (74.73%), Query Frame = 0


Query: 12  DTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESAR 71
           DTT+TK+FVGGL + T    +R YFE FG+I EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72  RACANPNPIIDGRRANCNIAALG-RPRPSPP 102
           RAC +PNPIIDGR+AN N+A LG +PR   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRIMQP 97

[Close]

BLAST of Clc11G15330 vs. ExPASy TrEMBL
Match: A0A0A0LGV2 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G889750 PE=4 SV=1)

HSP 1 Score: 416.4 bits (1069), Expect = 1.0e-112
Identity = 215/253 (84.98%), Postives = 227/253 (89.72%), Query Frame = 0


Query: 3   YPHYRSQFGDTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYGFV 62
           YPHYRSQFGDTTFTKVFVGGLAWETPT QM++YFEQFGDILEAVIITDKNTSKSKGYGFV
Sbjct: 4   YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFV 63

Query: 63  TFRDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQNSIDSYQGSTMQAQVA 122
           TFRD ESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQ+S++ YQGSTMQAQ  
Sbjct: 64  TFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQAT 123

Query: 123 PSYGGVPSPLNQPPFPPPPPPPPPVVYSPYGYPAYNPDYGY-HHHQAVYNPQIQQPQMYQ 182
           PSYGGVPSPLNQPP PPPPPP PPVVYSPYGYPAY+PDYGY HHHQAVYNPQ+QQPQMYQ
Sbjct: 124 PSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQPQMYQ 183

Query: 183 QSPYYYGYSLQSSRG-TFPSPSQSH-HPRLVLPPSYVYY-PTATTTQFE-TSFNYP---- 242
           Q+PYYYGY   SSRG TFP+PSQSH HPRL+LPPSYVYY P     QFE +SFNYP    
Sbjct: 184 QTPYYYGY---SSRGTTFPNPSQSHQHPRLLLPPSYVYYPPPPPPPQFEPSSFNYPPQPQ 243

Query: 243 PPLIRHRFPSTDS 247
           P +IRHRF STDS
Sbjct: 244 PQIIRHRFSSTDS 253

[Close]

BLAST of Clc11G15330 vs. ExPASy TrEMBL
Match: A0A6J1DIJ5 (RNA-binding protein 38 OS=Momordica charantia OX=3673 GN=LOC111020331 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 8.0e-102
Identity = 197/254 (77.56%), Postives = 214/254 (84.25%), Query Frame = 0


Query: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAY HYRSQFGDTTFTKVFVGGLAWETPT +MR YFEQFG+ILEAVIITDKNT+KSKGYG
Sbjct: 1   MAYAHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTAKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQNSIDSYQGSTMQAQ 120
           FVTFRD ESARRACANPNP+IDGRRANCNIAALGRPRPSPPRGR Q  I+ YQGSTMQA 
Sbjct: 61  FVTFRDPESARRACANPNPVIDGRRANCNIAALGRPRPSPPRGRAQGGINPYQGSTMQA- 120

Query: 121 VAPSYGGVPSPLNQPPFPPPPPPPPPVVYSPYGYPAYNPDYGYHHHQAVYNPQIQQPQMY 180
             PSY GVP+PLNQPP PP PPPPPPVVYSPYGYP+Y+PDYGY H QAVYNPQ+QQPQ Y
Sbjct: 121 -TPSYSGVPAPLNQPPLPPAPPPPPPVVYSPYGYPSYSPDYGY-HPQAVYNPQVQQPQYY 180

Query: 181 QQSPYYYGYSLQSSRGTFP-SPSQSHHPRLVLPPSYVYYPTATTT---QFETSFNY---- 240
            QSPY YGYS+QS R TF  +P QSHH R  +PPSY+YYP A  +   QFE S ++    
Sbjct: 181 HQSPYLYGYSVQSPRATFSNAPPQSHHHR--VPPSYLYYPAAAPSPHAQFEPSSSFSNYP 240

Query: 241 PPPLIRHRFPSTDS 247
           PPPL+RHRF STDS
Sbjct: 241 PPPLLRHRFSSTDS 249

[Close]

BLAST of Clc11G15330 vs. ExPASy TrEMBL
Match: A0A6J1F8X9 (RNA-binding protein 38-like OS=Cucurbita moschata OX=3662 GN=LOC111443164 PE=4 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 2.2e-99
Identity = 195/251 (77.69%), Postives = 207/251 (82.47%), Query Frame = 0


Query: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAYPHYRSQFGDTTFTKVFVGGLAWETPT +MR YFEQFGDILEAVIITDKNTSKSKGYG
Sbjct: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQNSIDSYQGSTMQAQ 120
           FVTFRDAESARRACANPNP+IDGRRANCNIAA+GRPRPSPPRGRGQ  ++ YQGSTMQA 
Sbjct: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQA- 120

Query: 121 VAPSYGGVPSPLNQPPFPPPPPPPPPVVYSPYGYPAYNPDYGYHHHQAVYNPQIQQPQMY 180
            APSY GVP PLNQPP    PPPPPPVVYSPYGYP Y  DYGYHH    ++   QQP   
Sbjct: 121 -APSYSGVPPPLNQPPL---PPPPPPVVYSPYGYPTYTTDYGYHHQHYQHH---QQP--- 180

Query: 181 QQSPYYYGYSLQSSRGTFPSPSQSHHPRLVLPPSYVYYP----TATTTQFETSFNY-PPP 240
             +PY+YGYSLQS RG FPSPSQSH PR+ +PP YVYYP     A   QFE SF+Y PPP
Sbjct: 181 VYNPYFYGYSLQSPRGAFPSPSQSHQPRVAVPP-YVYYPPPAAAAAAAQFEGSFSYPPPP 239

Query: 241 LIRHRFPSTDS 247
           LIRHRF STDS
Sbjct: 241 LIRHRFASTDS 239

[Close]

BLAST of Clc11G15330 vs. ExPASy TrEMBL
Match: A0A6J1IJV9 (RNA-binding protein 38-like OS=Cucurbita maxima OX=3661 GN=LOC111475419 PE=4 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 2.0e-97
Identity = 190/250 (76.00%), Postives = 202/250 (80.80%), Query Frame = 0


Query: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAYPHYRSQFGDTT TKVFVGGLAWETPT +MR YFEQFGDILEAVIITDKNTSKSKGYG
Sbjct: 1   MAYPHYRSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQNSIDSYQGSTMQAQ 120
           FVTFRDAESARRACANPNP+IDGRRANCNIAA+GRPRPSPPRGRGQ  ++ YQGSTMQA 
Sbjct: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQA- 120

Query: 121 VAPSYGGVPSPLNQPPFPPPPPPPPPVVYSPYGYPAYNPDYGYHHHQAVYNPQIQQPQMY 180
            APSY GVP PLNQPP     PPPPPVVYSPYGYP Y PDYGYH H        Q  Q  
Sbjct: 121 -APSYSGVPPPLNQPPL----PPPPPVVYSPYGYPTYTPDYGYHQH-------YQHHQQP 180

Query: 181 QQSPYYYGYSLQSSRGTFPSPSQSHHPRLVLPPSYVYY-PTATTTQFETSFNY---PPPL 240
             +PY+YGYS+QS RG FP PSQSH PR+ +PP YVYY P A   Q+E SF+Y   PPPL
Sbjct: 181 VYNPYFYGYSVQSPRGAFPIPSQSHQPRVAVPP-YVYYPPPAAAAQYEGSFSYPPPPPPL 236

Query: 241 IRHRFPSTDS 247
           IRHRF STDS
Sbjct: 241 IRHRFASTDS 236

[Close]

BLAST of Clc11G15330 vs. ExPASy TrEMBL
Match: A0A6J1J2C6 (RNA-binding protein 38-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481192 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 1.9e-87
Identity = 173/253 (68.38%), Postives = 188/253 (74.31%), Query Frame = 0


Query: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAYPHYRSQFGDTTFTKVFVGGLAWETPT +MR YFE+FGDILEAVIITDK TSKSKGYG
Sbjct: 90  MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEEFGDILEAVIITDKITSKSKGYG 149

Query: 61  FVTFRDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQNSIDSYQGSTMQAQ 120
           FVTFRD ESA+RAC NPNPIIDGRRANCNIAALGRPRPSPPRGR Q+ ++    S +Q  
Sbjct: 150 FVTFRDPESAKRACLNPNPIIDGRRANCNIAALGRPRPSPPRGRHQSGVNVQSASPLQLN 209

Query: 121 VAPSYGGVPSPLNQPPFPPPPPPPPPVVYSPYGYPAYNPDYGYHHHQAVYNPQIQQPQMY 180
           +                 PP PPPPPVVYSPYGYP+YN DY YH  Q VYNPQ++ PQ Y
Sbjct: 210 L-----------------PPLPPPPPVVYSPYGYPSYNSDYNYHQQQTVYNPQLRPPQFY 269

Query: 181 QQSPYYYGYSLQSSRGTFPSPSQSHHPRLVLPPSYVYYPTATTTQFETSFNYP-PPLIRH 240
           QQSPY+YGYS      TFP PS SH  R  LPPSY+YYPT    QFE SFNYP  PL+ H
Sbjct: 270 QQSPYFYGYS-----RTFPIPSPSHQHR--LPPSYMYYPTLPPAQFEPSFNYPQAPLVSH 318

Query: 241 RFPSTDSYCTLTC 253
           RF   DS  + TC
Sbjct: 330 RFSPADSQTSQTC 318

[Close]

BLAST of Clc11G15330 vs. TAIR 10
Match: AT1G78260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 225.7 bits (574), Expect = 4.8e-59
Identity = 142/272 (52.21%), Postives = 168/272 (61.76%), Query Frame = 0


Query: 5   HYRSQFGDTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYGFVTF 64
           +YRS FGDTT+TKVFVGGLAWETPT +MR YFEQFG+ILEAVIITDKNT KSKGYGFVTF
Sbjct: 6   YYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTF 65

Query: 65  RDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQNSIDSYQGSTMQAQVAPS 124
           R+++SA RA A+PNP+IDGR+ANCNIA+ GRPRPSPPRGRGQ       GS  Q Q    
Sbjct: 66  RESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQT------GSPSQYQ---- 125

Query: 125 YGGVPSPLNQPPFPPPPPPPPPVVYSPYGYPAYNPD-YGYHHHQAVYNPQIQQPQMYQQ- 184
             G PS       P PP   P ++Y  YGY  YNPD +GY  HQA+YN Q+QQ Q YQQ 
Sbjct: 126 -SGGPSTYTGMAAPLPPAAAPQLMYPSYGY-TYNPDQFGY--HQALYNTQLQQAQYYQQQ 185

Query: 185 --------------------SPYYYGYSLQSSRGTF--------PSPSQSHHPRLVLPPS 244
                               SPYYYGYSLQ+ R  +        P   Q HH +    PS
Sbjct: 186 QQLYGGGATSPSSSGATIMPSPYYYGYSLQAPRVPYQHHHHLPQPYNPQQHHHQRFSSPS 245

Query: 245 YVYYPTATTTQFETSFNYPPPLIRHRFPSTDS 247
           ++ YP        ++ ++ PPL      ST+S
Sbjct: 246 FLVYP--------SNSSFAPPLQGVLSSSTES 255

[Close]

BLAST of Clc11G15330 vs. TAIR 10
Match: AT1G78260.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 225.7 bits (574), Expect = 4.8e-59
Identity = 142/273 (52.01%), Postives = 168/273 (61.54%), Query Frame = 0


Query: 5   HYRSQFGDTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYGFVTF 64
           +YRS FGDTT+TKVFVGGLAWETPT +MR YFEQFG+ILEAVIITDKNT KSKGYGFVTF
Sbjct: 6   YYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTF 65

Query: 65  RDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQNSIDSYQGSTMQAQVAPS 124
           R+++SA RA A+PNP+IDGR+ANCNIA+ GRPRPSPPRGRGQ       GS  Q Q    
Sbjct: 66  RESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQT------GSPSQYQ---- 125

Query: 125 YGGVPSPLNQPPFPPPPPPPPPVVYSPYGYPAYNPD-YGYHHHQAVYNPQIQQPQMYQQ- 184
             G PS       P PP   P ++Y  YGY  YNPD +GY  HQA+YN Q+QQ Q YQQ 
Sbjct: 126 -SGGPSTYTGMAAPLPPAAAPQLMYPSYGY-TYNPDQFGY--HQALYNTQLQQAQYYQQQ 185

Query: 185 --------------------SPYYYGYSLQSSRGTF--------PSPSQSHHPRLVLPPS 244
                               SPYYYGYSLQ+ R  +        P   Q HH +    PS
Sbjct: 186 QQLYGGGATSPSSSGATIMPSPYYYGYSLQAPRVPYQHHHHLPQPYNPQQHHHQRFSSPS 245

Query: 245 YVYYPTATTTQFETSFNYPPPLIRHRFPSTDSY 248
           ++ YP        ++ ++ PPL      ST +Y
Sbjct: 246 FLVYP--------SNSSFAPPLQGVLSSSTGTY 256

[Close]

BLAST of Clc11G15330 vs. TAIR 10
Match: AT1G22330.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 205.7 bits (522), Expect = 5.2e-53
Identity = 130/250 (52.00%), Postives = 153/250 (61.20%), Query Frame = 0


Query: 5   HYRSQFGDTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYGFVTF 64
           +YRS FGDTT TKVFVGGLAWETPT +MR YF+QFG+ILEAVIITDK T KSKGYGFVTF
Sbjct: 6   YYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTF 65

Query: 65  RDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQ-NSIDSYQGSTMQAQVAP 124
           RD++SA RA A+PNP+IDGR+ANCNIA+ GRPRPS PRGRGQ  S   YQG         
Sbjct: 66  RDSDSATRAVADPNPVIDGRKANCNIASFGRPRPSTPRGRGQGGSPSQYQGGGQS----- 125

Query: 125 SYGGVPSPLNQPPFPPPPPPPPPVVYSPYGYPAYNPDYGYHHHQAVYNPQIQQPQMYQQS 184
           SY G+ +P+ Q            ++Y  YGY  YN +YGY  HQA+YN Q+QQ Q YQQ 
Sbjct: 126 SYTGMAAPVQQ-------AAAAQLMYPSYGY-TYNSEYGY--HQALYNAQLQQAQYYQQQ 185

Query: 185 PYYYGYSLQ-SSRGTFPSP-----SQSHHPRLVLPPSYVYYPTATTTQFETSFNYPPPLI 244
            Y  G +   SS    PSP     + S  P L     Y Y+      Q +          
Sbjct: 186 MYGGGGATSPSSSNIMPSPYYYLQAPSPRPYLHHQQHYQYHHHQQQQQQQ---------- 230

Query: 245 RHRFPSTDSY 248
           + R PS  SY
Sbjct: 246 QQRLPSASSY 230

[Close]

BLAST of Clc11G15330 vs. TAIR 10
Match: AT1G76460.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 158.7 bits (400), Expect = 7.3e-39
Identity = 103/203 (50.74%), Postives = 121/203 (59.61%), Query Frame = 0


Query: 5   HY-RSQFGDTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYGFVT 64
           HY  S FGDTTFTKVFVGGLAWET +  +R +FEQ+G+ILEAV+I DKNT +SKGYGFVT
Sbjct: 12  HYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVT 71

Query: 65  FRDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQNSIDSYQGSTMQAQVAP 124
           FRD E+ARRACA+P PIIDGRRANCN+A+LGRPRP  P       I +  G    A  +P
Sbjct: 72  FRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPLPYA----VIPNMPGRLRPA--SP 131

Query: 125 SYGGVPSPL-----NQPPFPPPPPPPPPVVYSPYGYPAYNPDYGYHHHQAVYNPQIQQ-- 184
             G V  P      N P   P P      V  PYG  AY P+Y Y   Q +Y+P + Q  
Sbjct: 132 YIGNVQGPRGSLIGNYPYQQPLPYNYQQGVVYPYGVTAYGPEYMYSQSQGLYSPYMGQQY 191

Query: 185 ------PQMYQQSPYYYGYSLQS 194
                 P       Y YG   Q+
Sbjct: 192 LQVYGVPGAVNSPVYQYGQLSQT 208

[Close]

BLAST of Clc11G15330 vs. TAIR 10
Match: AT1G20880.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 154.8 bits (390), Expect = 1.0e-37
Identity = 109/248 (43.95%), Postives = 134/248 (54.03%), Query Frame = 0


Query: 5   HY-RSQFGDTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYGFVT 64
           HY  S FGDTTFTKVFVGGLAWET +  +R +F+Q+GDILEAV+ITDKNT +SKGYGFVT
Sbjct: 12  HYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVT 71

Query: 65  FRDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQNSIDSYQGSTMQAQVAP 124
           FRD E+ARRAC +P PIIDGRRANCN+A+LGR RP       Q ++  +    ++   +P
Sbjct: 72  FRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPM-----QYAVIPHAPGRVRPP-SP 131

Query: 125 SYGGVPSPL-----NQPPFPPPPPPPPPVVYSPYGYPAYNPDYGYHHHQAVYNPQIQQ-- 184
             G V SP      + P   PP       V  PYG   Y PDY Y   Q  Y P + Q  
Sbjct: 132 YVGSVQSPRGLHFGSHPYHQPPTYNYQQGVVYPYGVTPYGPDYMYSQSQGFYGPYMGQQY 191

Query: 185 ------PQMYQQSPYYYG---YSLQSSRGTFPSPSQSHHPRLVLPPSYVYYPTATTTQFE 236
                 P       Y YG   +++  + G       SH      P S+V    AT+    
Sbjct: 192 LQVYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSH------PGSHVLQLGATSPMSA 247

The following BLAST results are available for this feature:

BLAST of Clc11G15330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897135.1	4.3e-118	85.77	RNA-binding protein 38 [Benincasa hispida]	[more]
XP_004136431.1	2.1e-112	84.98	RNA-binding protein 38 [Cucumis sativus] >KGN60219.1 hypothetical protein Csa_00...	[more]
XP_022152706.1	1.6e-101	77.56	RNA-binding protein 38 [Momordica charantia]	[more]
KAG6591668.1	2.2e-101	78.40	putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7024550.1	2.8e-101	78.09	putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Clc11G15330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5ZJX4	2.0e-25	64.37	RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1	[more]
Q6GQD3	3.4e-25	61.54	RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1	[more]
D3Z4I3	4.5e-25	61.54	RNA-binding protein 24 OS=Mus musculus OX=10090 GN=Rbm24 PE=1 SV=1	[more]
Q76LC6	9.9e-25	60.44	RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1	[more]
Q9BX46	1.3e-24	60.44	RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1	[more]

BLAST of Clc11G15330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGV2	1.0e-112	84.98	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G889750 PE=4 SV...	[more]
A0A6J1DIJ5	8.0e-102	77.56	RNA-binding protein 38 OS=Momordica charantia OX=3673 GN=LOC111020331 PE=4 SV=1	[more]
A0A6J1F8X9	2.2e-99	77.69	RNA-binding protein 38-like OS=Cucurbita moschata OX=3662 GN=LOC111443164 PE=4 S...	[more]
A0A6J1IJV9	2.0e-97	76.00	RNA-binding protein 38-like OS=Cucurbita maxima OX=3661 GN=LOC111475419 PE=4 SV=...	[more]
A0A6J1J2C6	1.9e-87	68.38	RNA-binding protein 38-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1114811...	[more]

BLAST of Clc11G15330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78260.1	4.8e-59	52.21	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G78260.2	4.8e-59	52.01	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22330.1	5.2e-53	52.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G76460.1	7.3e-39	50.74	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.1	1.0e-37	43.95	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 17..89 e-value: 6.1E-23 score: 92.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 18..76 e-value: 4.7E-16 score: 58.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 16..93 score: 16.022581
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 3..109 e-value: 1.6E-24 score: 88.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..144
None	No IPR available	PANTHER	PTHR11176:SF23	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 1..245
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 16..91 e-value: 8.98367E-44 score: 141.984
IPR037366	BOULE/DAZ family	PANTHER	PTHR11176	BOULE-RELATED	coord: 1..245
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 9..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G15330.2	Clc11G15330.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding