Clc11G14900 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G14900
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr11: 25750645 .. 25751480 (+)
RNA-Seq Expression	Clc11G14900
Synteny	Clc11G14900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTCCTGTTCACTCTCCTTCTTCTTTATCCTCCGCCATTTTCATCTCTCGTGAAAATCTTATAAATTCCTCATTCGCCATGCCAAAGACTGAACGATCCCAATCCAAAAATGGCTAATTTTCCAATTTTCACCAAAAGGGAAAAAGTCGAGAACAGAGAAGAATAATCATAAAGGCATAGATAAAGATCAAGAACCCAAAATGCAAAGCCCAATTCCTCTTAAACTTACCCAAATAGTTCTCCGGTGGCTCCTGATAATGAATCTCAAATTCCTCATCCGCCACGCCCCCATTGAACCCTCCACCAGCAACTGCTGTGGTGGCGGAAATCCTCATCTTCATCTCTCTGAGCTCCTCAGTGCGAAACCTAGAGTGAGCTTATGGCAACACCGGTGATACTGGAATCCATTGATGCAGTGAAGGGTCTGAGCTACAAAGACGAAGTAACTGAGATGGGAAACGGAGAGAAAAGCAATGGGGATCCCGCAATGGTGGCATTTGAGGTGAGGGGAAAGAGATTGGGCCAAAAAAATGAGACTCAGAGAGATGAAAGAGCTGGGAAAGCTAGTGGAACTCTTTCTTTTGGAGATCTATGGCGCGTTTCTTCTCAAGGGTCTTCTCGGAATGGAGCTGGATTGAGAGCATGGAGAGCTAAGTCTTTGGAGATTGATGGGGTGTTGCCGACTCTGAGTTTCCAAATTAATCCGCCATTGATGAAGAGCTTGCTTGTGAGAAGTAGGAACAAAGAGGGAGAGAGAGAAAGAGAGGAGGGAGAAACTATATATGAATATCCACAAATATAAATTAATTTTAATAAAAGGGCTGATTGCAACAAA

mRNA sequence

CTCTCCTGTTCACTCTCCTTCTTCTTTATCCTCCGCCATTTTCATCTCTCGTGAAAATCTTATAAATTCCTCATTCGCCATGCCAAAGACTGAACGATCCCAATCCAAAAATGGCTAATTTTCCAATTTTCACCAAAAGGGAAAAAGTCGAGAACAGAGAAGAATAATCATAAAGGCATAGATAAAGATCAAGAACCCAAAATGCAAAGCCCAATTCCTCTTAAACTTACCCAAATAGTTCTCCGGTGGCTCCTGATAATGAATCTCAAATTCCTCATCCGCCACGCCCCCATTGAACCCTCCACCAGCAACTGCTGTGGTGGCGGAAATCCTCATCTTCATCTCTCTGAGCTCCTCAGTGCGAAACCTAGAGTGAGCTTATGGCAACACCGGTGATACTGGAATCCATTGATGCAGTGAAGGGTCTGAGCTACAAAGACGAAGTAACTGAGATGGGAAACGGAGAGAAAAGCAATGGGGATCCCGCAATGGTGGCATTTGAGGTGAGGGGAAAGAGATTGGGCCAAAAAAATGAGACTCAGAGAGATGAAAGAGCTGGGAAAGCTAGTGGAACTCTTTCTTTTGGAGATCTATGGCGCGTTTCTTCTCAAGGGTCTTCTCGGAATGGAGCTGGATTGAGAGCATGGAGAGCTAAGTCTTTGGAGATTGATGGGGTGTTGCCGACTCTGAGTTTCCAAATTAATCCGCCATTGATGAAGAGCTTGCTTGTGAGAAGTAGGAACAAAGAGGGAGAGAGAGAAAGAGAGGAGGGAGAAACTATATATGAATATCCACAAATATAAATTAATTTTAATAAAAGGGCTGATTGCAACAAA

Coding sequence (CDS)

ATGGCAACACCGGTGATACTGGAATCCATTGATGCAGTGAAGGGTCTGAGCTACAAAGACGAAGTAACTGAGATGGGAAACGGAGAGAAAAGCAATGGGGATCCCGCAATGGTGGCATTTGAGGTGAGGGGAAAGAGATTGGGCCAAAAAAATGAGACTCAGAGAGATGAAAGAGCTGGGAAAGCTAGTGGAACTCTTTCTTTTGGAGATCTATGGCGCGTTTCTTCTCAAGGGTCTTCTCGGAATGGAGCTGGATTGAGAGCATGGAGAGCTAAGTCTTTGGAGATTGATGGGGTGTTGCCGACTCTGAGTTTCCAAATTAATCCGCCATTGATGAAGAGCTTGCTTGTGAGAAGTAGGAACAAAGAGGGAGAGAGAGAAAGAGAGGAGGGAGAAACTATATATGAATATCCACAAATATAA

Protein sequence

MATPVILESIDAVKGLSYKDEVTEMGNGEKSNGDPAMVAFEVRGKRLGQKNETQRDERAGKASGTLSFGDLWRVSSQGSSRNGAGLRAWRAKSLEIDGVLPTLSFQINPPLMKSLLVRSRNKEGEREREEGETIYEYPQI

Homology

[Close]

BLAST of Clc11G14900 vs. NCBI nr
Match: KAA0025559.1 (hypothetical protein E6C27_scaffold253G00480 [Cucumis melo var. makuwa] >TYK12434.1 hypothetical protein E5676_scaffold255G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 2.6e-12
Identity = 41/57 (71.93%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 1  MATPVILESIDAVKGLSYKDEVTEMGNGEKSNGDPAMVAFEVRGKRLGQKNETQRDE 58
          MAT +ILE+IDA +GLS +D  TEMGNGEKSNGDPAM AFE RGKRLGQ+NE++  E
Sbjct: 39 MATALILEAIDATEGLSNRDIETEMGNGEKSNGDPAMAAFEARGKRLGQENESEEYE 95

[Close]

BLAST of Clc11G14900 vs. NCBI nr
Match: KAG6595114.1 (hypothetical protein SDJN03_11667, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.2 bits (165), Expect = 6.6e-08
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 1  MATPVILESIDAVKGLSYKDEVTEMGNGEKSNGDPAMVAFEVRGKRLGQKNETQRDE 58
          MA  ++LE+IDA +GL  +D   EMGNGEKSNGDP M A E  GK LG+++E Q DE
Sbjct: 1  MAAALVLEAIDAAEGLGDRDVEGEMGNGEKSNGDPGMAAVEAMGKGLGEEDEAQEDE 57

[Close]

BLAST of Clc11G14900 vs. NCBI nr
Match: KAF5457973.1 (hypothetical protein F2P56_022042 [Juglans regia])

HSP 1 Score: 64.3 bits (155), Expect = 9.5e-07
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 1   MATPVILESIDAVKGLSYKDEVTEMGNGEKSNGDPAMVAFEVRGKRLGQKNETQRDE 58
           +A P++LE +DA++GL + D   E+G GE+S+GDPAM A E RG  L ++NETQ DE
Sbjct: 57  VAAPLVLEPVDALEGLGHGDVEDEVGEGEESDGDPAMAALEARGLSLCKENETQEDE 113

[Close]

BLAST of Clc11G14900 vs. NCBI nr
Match: KAG2399416.1 (uncharacterized protein HKW66_Vig0081020 [Vigna angularis])

HSP 1 Score: 55.1 bits (131), Expect = 5.8e-04
Identity = 25/57 (43.86%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 1   MATPVILESIDAVKGLSYKDEVTEMGNGEKSNGDPAMVAFEVRGKRLGQKNETQRDE 58
           +A  ++LE++DA +GL   D   E+G+GE+ +GDPA+ A E RG  LG++ E++ DE
Sbjct: 57  VAAALVLEAVDAAEGLGDGDVEDEVGDGEQRDGDPAVTALEARGLGLGEEEESEEDE 113

[Close]

BLAST of Clc11G14900 vs. NCBI nr
Match: KOM41146.1 (hypothetical protein LR48_Vigan04g134400 [Vigna angularis])

HSP 1 Score: 55.1 bits (131), Expect = 5.8e-04
Identity = 25/57 (43.86%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 1   MATPVILESIDAVKGLSYKDEVTEMGNGEKSNGDPAMVAFEVRGKRLGQKNETQRDE 58
           +A  ++LE++DA +GL   D   E+G+GE+ +GDPA+ A E RG  LG++ E++ DE
Sbjct: 57  VAAALVLEAVDAAEGLGDGDVEDEVGDGEQRDGDPAVTALEARGLGLGEEEESEEDE 113

[Close]

BLAST of Clc11G14900 vs. ExPASy TrEMBL
Match: A0A5D3CMS2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00090 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.2e-12
Identity = 41/57 (71.93%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 1  MATPVILESIDAVKGLSYKDEVTEMGNGEKSNGDPAMVAFEVRGKRLGQKNETQRDE 58
          MAT +ILE+IDA +GLS +D  TEMGNGEKSNGDPAM AFE RGKRLGQ+NE++  E
Sbjct: 39 MATALILEAIDATEGLSNRDIETEMGNGEKSNGDPAMAAFEARGKRLGQENESEEYE 95

[Close]

BLAST of Clc11G14900 vs. ExPASy TrEMBL
Match: A0A0A0KJ28 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G485135 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.6e-12
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 1   MATPVILESIDAVKGLSYKDEVTEMGNGEKSNGDPAMVAFEVRGKRLGQKNETQRDE 58
           MAT ++LE+IDA +GLS +D  TEMGNGEKSNGDPAM AFE RGKRLGQ+NE++  E
Sbjct: 58  MATALVLEAIDATEGLSDRDVETEMGNGEKSNGDPAMAAFEARGKRLGQENESEEYE 114

[Close]

BLAST of Clc11G14900 vs. ExPASy TrEMBL
Match: A0A0L9UEK2 (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan04g134400 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.8e-04
Identity = 25/57 (43.86%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 1   MATPVILESIDAVKGLSYKDEVTEMGNGEKSNGDPAMVAFEVRGKRLGQKNETQRDE 58
           +A  ++LE++DA +GL   D   E+G+GE+ +GDPA+ A E RG  LG++ E++ DE
Sbjct: 57  VAAALVLEAVDAAEGLGDGDVEDEVGDGEQRDGDPAVTALEARGLGLGEEEESEEDE 113

[Close]

BLAST of Clc11G14900 vs. ExPASy TrEMBL
Match: A0A4D6NPL4 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g2277 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.6e-04
Identity = 25/57 (43.86%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 1   MATPVILESIDAVKGLSYKDEVTEMGNGEKSNGDPAMVAFEVRGKRLGQKNETQRDE 58
           +A  ++LE++DA +GL   D   E+G+GE+ +GDPA+ A E RG  LG++ E++ DE
Sbjct: 57  VAAALVLEAVDAAEGLRDGDVEDEVGDGEQRDGDPAVAALEARGLGLGEEEESEEDE 113

The following BLAST results are available for this feature:

BLAST of Clc11G14900 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025559.1	2.6e-12	71.93	hypothetical protein E6C27_scaffold253G00480 [Cucumis melo var. makuwa] >TYK1243...	[more]
KAG6595114.1	6.6e-08	57.89	hypothetical protein SDJN03_11667, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAF5457973.1	9.5e-07	52.63	hypothetical protein F2P56_022042 [Juglans regia]	[more]
KAG2399416.1	5.8e-04	43.86	uncharacterized protein HKW66_Vig0081020 [Vigna angularis]	[more]
KOM41146.1	5.8e-04	43.86	hypothetical protein LR48_Vigan04g134400 [Vigna angularis]	[more]

BLAST of Clc11G14900 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc11G14900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CMS2	1.2e-12	71.93	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KJ28	1.6e-12	70.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G485135 PE=4 SV=1	[more]
A0A0L9UEK2	2.8e-04	43.86	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan04g134400 PE...	[more]
A0A4D6NPL4	3.6e-04	43.86	Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g2277 PE=4 SV=...	[more]

BLAST of Clc11G14900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..140
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G14900.1	Clc11G14900.1	mRNA