Clc11G13180 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G13180
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	transcription factor bHLH146-like
Location	ClcChr11: 23421927 .. 23422785 (+)
RNA-Seq Expression	Clc11G13180
Synteny	Clc11G13180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAAAAAAGATTTTTTGTGAATGGGAAGGCAAATTGTGAGAAAAGGATCAAGAAGGGTATTTTCCCTAGAACCGAACAAAGTTGCATACACCATGTTTGCAAGAAACTATGTCAAATATTTGATGACATCTTTAGTTAAAATCTCTCATCATCAACAACAAAAAAATTTTCAGAAACTTGTGAAGTTTGAAGTTGACATGGCAATGGCTCTATCAGCAAGTGAATTTGCTTGGGGAATTGCTCTAAAAAAGAAGCTTCTTCAAAGAGAAGTTGGCAATGGCAATGAAAATGGTTTTGATTTCTCTCTCCAAACAGTCAAATTTTCTCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAGATGGAAAATGGGTTGATGAAGCTGAGAAAAATCATACCAGGTGGTAGTGATTTTAATGTTGGAGGTTTGGAAGAAGATGATTTGTTGAAACAAACTGAAAGTTATGTAAAATGTCTTGAGTTGCAAGTGAATGTTCTTAGAGGTTTGGTTGAAACAAACACATTTTAATTTTCTTTTTTCTTTTTGGGACATTTCTATGTGGAAAAGAAAAATCATTTTAGCAATATATATGAATTTTCTCCTACCAAAAATCTAATGTACTATATCTAGTTTCAAATTCTTTTTATTTTCCAACTAATTAAATCTAAAAATTGTTTATCGAATGATTATGAGCCATTTAATACAATTTACGTGGTTAAAATGAGCATAATTTAATGATAATTGAATGAACTACCTTCTTTGAGGTTGAAGATTTAAAATGACAATAAT

mRNA sequence

AAAAAAAAAAAAAAAAGATTTTTTGTGAATGGGAAGGCAAATTGTGAGAAAAGGATCAAGAAGGGTATTTTCCCTAGAACCGAACAAAGTTGCATACACCATGTTTGCAAGAAACTATGTCAAATATTTGATGACATCTTTAGTTAAAATCTCTCATCATCAACAACAAAAAAATTTTCAGAAACTTGTGAAGTTTGAAGTTGACATGGCAATGGCTCTATCAGCAAGTGAATTTGCTTGGGGAATTGCTCTAAAAAAGAAGCTTCTTCAAAGAGAAGTTGGCAATGGCAATGAAAATGGTTTTGATTTCTCTCTCCAAACAGTCAAATTTTCTCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAGATGGAAAATGGGTTGATGAAGCTGAGAAAAATCATACCAGGTGGTAGTGATTTTAATGTTGGAGGTTTGGAAGAAGATGATTTGTTGAAACAAACTGAAAGTTATGTAAAATGTCTTGAGTTGCAAGTGAATGTTCTTAGAGGTTTGGTTGAAACAAACACATTTTAATTTTCTTTTTTCTTTTTGGGACATTTCTATGTGGAAAAGAAAAATCATTTTAGCAATATATATGAATTTTCTCCTACCAAAAATCTAATGTACTATATCTAGTTTCAAATTCTTTTTATTTTCCAACTAATTAAATCTAAAAATTGTTTATCGAATGATTATGAGCCATTTAATACAATTTACGTGGTTAAAATGAGCATAATTTAATGATAATTGAATGAACTACCTTCTTTGAGGTTGAAGATTTAAAATGACAATAAT

Coding sequence (CDS)

ATGGGAAGGCAAATTGTGAGAAAAGGATCAAGAAGGGTATTTTCCCTAGAACCGAACAAAGTTGCATACACCATGTTTGCAAGAAACTATGTCAAATATTTGATGACATCTTTAGTTAAAATCTCTCATCATCAACAACAAAAAAATTTTCAGAAACTTGTGAAGTTTGAAGTTGACATGGCAATGGCTCTATCAGCAAGTGAATTTGCTTGGGGAATTGCTCTAAAAAAGAAGCTTCTTCAAAGAGAAGTTGGCAATGGCAATGAAAATGGTTTTGATTTCTCTCTCCAAACAGTCAAATTTTCTCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAGATGGAAAATGGGTTGATGAAGCTGAGAAAAATCATACCAGGTGGTAGTGATTTTAATGTTGGAGGTTTGGAAGAAGATGATTTGTTGAAACAAACTGAAAGTTATGTAAAATGTCTTGAGTTGCAAGTGAATGTTCTTAGAGGTTTGGTTGAAACAAACACATTTTAA

Protein sequence

MGRQIVRKGSRRVFSLEPNKVAYTMFARNYVKYLMTSLVKISHHQQQKNFQKLVKFEVDMAMALSASEFAWGIALKKKLLQREVGNGNENGFDFSLQTVKFSQEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKMENGLMKLRKIIPGGSDFNVGGLEEDDLLKQTESYVKCLELQVNVLRGLVETNTF

Homology

[Close]

BLAST of Clc11G13180 vs. NCBI nr
Match: XP_038877916.1 (transcription factor bHLH146-like [Benincasa hispida])

HSP 1 Score: 243.8 bits (621), Expect = 1.2e-60
Identity = 150/196 (76.53%), Postives = 161/196 (82.14%), Query Frame = 0


Query: 1   MGRQIVRKGSRRVFSLEPNKVAYTMFARNYVKYLMTSLVKISHH------QQQKNFQKLV 60
           MGRQIVRKGSRRVFSLEPNKVAYTMFARNYVK+LMTSLVKISHH      QQ++NFQK V
Sbjct: 1   MGRQIVRKGSRRVFSLEPNKVAYTMFARNYVKHLMTSLVKISHHHHQHHQQQEQNFQKFV 60

Query: 61  KFEVDMAMALSAS-EFAWGIALKKKLLQREVGNGNENGFDFSLQTVKFSQEEEEEEEEEE 120
           KFEVDMAMA SAS +FAWGIALKKKLLQR+   GNEN FDFSLQTVKFSQ          
Sbjct: 61  KFEVDMAMAQSASDQFAWGIALKKKLLQRD-QVGNENDFDFSLQTVKFSQ---------- 120

Query: 121 EEEEEEEEEEEEEEEEEEEEKMENGLMKLRKIIPGGSDFNVGGLEEDDLLKQTESYVKCL 180
                E   +EEEEE EEE+KME+GLMKLRKIIPGG+DFN+   E+DDLLKQTESYVKCL
Sbjct: 121 -----ENLGKEEEEEAEEEKKMEHGLMKLRKIIPGGADFNI---EDDDLLKQTESYVKCL 177

Query: 181 ELQVNVLRGLVETNTF 190
           ELQVNVLRGLVETNTF
Sbjct: 181 ELQVNVLRGLVETNTF 177

[Close]

BLAST of Clc11G13180 vs. NCBI nr
Match: XP_016901419.1 (PREDICTED: uncharacterized protein At4g30180 [Cucumis melo])

HSP 1 Score: 242.3 bits (617), Expect = 3.4e-60
Identity = 152/197 (77.16%), Postives = 167/197 (84.77%), Query Frame = 0


Query: 1   MGRQIVRKGSRRVFSLEPNKVAYTMFARNYVKYLMTSLVKISHHQQQKNFQKLVKFEVDM 60
           M R+IVRKG RRVFS+EPNKVAYTMFARNYVK+LMTSLVKISH QQQ+NFQKLV+FEVDM
Sbjct: 1   MVRKIVRKG-RRVFSIEPNKVAYTMFARNYVKHLMTSLVKISHQQQQQNFQKLVRFEVDM 60

Query: 61  AMALSASEFAWGIALKKKLLQRE-----VGNGNENGFDFSLQTVKFSQEEEEEEEEEEEE 120
           AMA SASEF+WGIALKKKLLQR+     +GNG+ENGFDFSLQT+K    +    EEE+  
Sbjct: 61  AMAQSASEFSWGIALKKKLLQRDDQQEVLGNGSENGFDFSLQTMKKISHKNLGNEEEDHH 120

Query: 121 EEEEEEEEEEEEEEEEEEKMENGLMKLRKIIPGGSDFNVGGL---EEDDLLKQTESYVKC 180
           E+EEEEEEEEEEE      MENGLMKLRKIIPGG DF++GG    EEDDLLKQTESYVKC
Sbjct: 121 EDEEEEEEEEEEE------MENGLMKLRKIIPGGDDFSIGGNNLDEEDDLLKQTESYVKC 180

Query: 181 LELQVNVLRGLVETNTF 190
           LELQVNVLRGLVETNTF
Sbjct: 181 LELQVNVLRGLVETNTF 190

[Close]

BLAST of Clc11G13180 vs. NCBI nr
Match: XP_011648935.1 (transcription factor bHLH146 [Cucumis sativus] >KGN61154.1 hypothetical protein Csa_021305 [Cucumis sativus])

HSP 1 Score: 238.0 bits (606), Expect = 6.5e-59
Identity = 147/194 (75.77%), Postives = 164/194 (84.54%), Query Frame = 0


Query: 1   MGRQIVRKGSRRVFSLEPNKVAYTMFARNYVKYLMTSLVKISHHQQQKNFQKLVKFEVDM 60
           M R++VRKG RRVFS+EP+KVAYTMF RNYVK+LMTSLVKISH QQQ+NF+KLVKFEVDM
Sbjct: 1   MVRKMVRKG-RRVFSIEPSKVAYTMFERNYVKHLMTSLVKISHQQQQQNFRKLVKFEVDM 60

Query: 61  AMALSASEFAWGIALKKKLLQRE---VGNGNENGFDFSLQTVKFSQEEEEEEEEEEEEEE 120
           AMA SASEF+WGIALKKKLLQR+   +GNGNENGFDFS+QTVK + +E    EEE+   E
Sbjct: 61  AMAQSASEFSWGIALKKKLLQRDQQVLGNGNENGFDFSVQTVKKTSQENLGNEEEDHHHE 120

Query: 121 EEEEEEEEEEEEEEEEKMENGLMKLRKIIPGGSDFNVGGL--EEDDLLKQTESYVKCLEL 180
           EEEEEEEE         MENGLMKLRKIIPGG +F++GG   EEDDLLKQTESYVKCLEL
Sbjct: 121 EEEEEEEE---------MENGLMKLRKIIPGGDNFSIGGNLDEEDDLLKQTESYVKCLEL 180

Query: 181 QVNVLRGLVETNTF 190
           QVNVLRGLVETNTF
Sbjct: 181 QVNVLRGLVETNTF 184

[Close]

BLAST of Clc11G13180 vs. NCBI nr
Match: XP_023538247.1 (transcription factor bHLH146-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 220.3 bits (560), Expect = 1.4e-53
Identity = 138/191 (72.25%), Postives = 151/191 (79.06%), Query Frame = 0


Query: 1   MGRQIVRKGSRRVFSLEPNKVAYTMFARNYVKYLMTSLVKISHHQQQ---KNFQKLVKFE 60
           MGRQI+RK  +RV SLEPNK+AYTMFARNYVKYLMTSL KISHH QQ   +NFQKLVKFE
Sbjct: 1   MGRQILRK-RKRVLSLEPNKLAYTMFARNYVKYLMTSLPKISHHHQQHQEQNFQKLVKFE 60

Query: 61  VDMAMALSASEFAWGIALKKKLLQREVGNGNENGFDFSLQTVKFSQEEEEEEEEEEEEEE 120
           VDMAMA SA+EF+WG ALKKKLLQRE GNG+ NGF FSLQTVKFSQ              
Sbjct: 61  VDMAMAQSATEFSWGNALKKKLLQREDGNGS-NGFGFSLQTVKFSQ-------------- 120

Query: 121 EEEEEEEEEEEEEEEEKMENGLMKLRKIIPGGSDFNVGGLEEDDLLKQTESYVKCLELQV 180
           E  E E EE EE +E K+ENGLMKLRKI+PGGS+   G LEEDDL KQTESY+KCLELQV
Sbjct: 121 ENLEREHEEHEERKEPKIENGLMKLRKIVPGGSN---GELEEDDLFKQTESYIKCLELQV 172

Query: 181 NVLRGLVETNT 189
           NVLR LV+TNT
Sbjct: 181 NVLRCLVDTNT 172

[Close]

BLAST of Clc11G13180 vs. NCBI nr
Match: XP_022938205.1 (transcription factor bHLH146-like [Cucurbita moschata])

HSP 1 Score: 216.9 bits (551), Expect = 1.5e-52
Identity = 138/191 (72.25%), Postives = 152/191 (79.58%), Query Frame = 0


Query: 1   MGRQIVRKGSRRVFSLEPNKVAYTMFARNYVKYLMTSLVKISHHQQQ---KNFQKLVKFE 60
           MGRQI+RK  +RV SLEPNK+AYTMFARNYVKYLMTSL KISHH QQ   +NFQKLVKFE
Sbjct: 1   MGRQILRK-RKRVLSLEPNKLAYTMFARNYVKYLMTSLPKISHHHQQHQEQNFQKLVKFE 60

Query: 61  VDMAMALSASEFAWGIALKKKLLQREVGNGNENGFDFSLQTVKFSQEEEEEEEEEEEEEE 120
           VDMAMA SA+EF+WG ALKKKLLQRE GNG+ NGF  SLQ VKFS+           E  
Sbjct: 61  VDMAMAQSATEFSWGNALKKKLLQREDGNGS-NGFGLSLQRVKFSR-----------ENL 120

Query: 121 EEEEEEEEEEEEEEEEKMENGLMKLRKIIPGGSDFNVGGLEEDDLLKQTESYVKCLELQV 180
           E E+EE EE EE EE K+ENGLMKLRKI+PGGS+   G LEEDDL KQTESY+KCLELQV
Sbjct: 121 EREDEEHEEREEHEERKIENGLMKLRKIVPGGSN---GELEEDDLFKQTESYIKCLELQV 175

Query: 181 NVLRGLVETNT 189
           NVLR LV+TNT
Sbjct: 181 NVLRCLVDTNT 175

[Close]

BLAST of Clc11G13180 vs. ExPASy Swiss-Prot
Match: Q9SUM5 (Transcription factor bHLH146 OS=Arabidopsis thaliana OX=3702 GN=BHLH146 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 3.3e-05
Identity = 62/188 (32.98%), Postives = 96/188 (51.06%), Query Frame = 0


Query: 1   MGRQIVRKGSRRVFSLEPNKVAYTMFARNYVKYLMTSLVKISHHQQQKNFQKLVKFEVDM 60
           M RQI+ +  +RVFSLEPNK    +F R Y  +L+ +L K+  +  + + ++ VK EVDM
Sbjct: 1   MERQIINR-KKRVFSLEPNKNPSAVFTRKYTSHLVPALKKL--NMNKNSSKQTVKHEVDM 60

Query: 61  AMALSASEFAWGIALKKKLLQREVGNGNENGFDFSLQTVKFSQEEEEEEEEEEEEEEEEE 120
           A+ALSA EFAW   L +KL                      S             +    
Sbjct: 61  ALALSAQEFAWSRFLLQKL----------------------SSSSNPTTTTSSSSDGIRI 120

Query: 121 EEEEEEEEEEEEEKMENGLMKLRKIIPGGSDFNVGGLEEDDLLKQTESYVKCLELQVNVL 180
            E  ++E   EE  +E  L +L+K++PGG + NV     +++L +  +Y+KCLELQ   L
Sbjct: 121 LERPDKEGGNEEGGIEERLRELKKLLPGGEEMNV-----EEMLSEIGNYIKCLELQTIAL 158

Query: 181 RGLVETNT 189
           + +V+ +T
Sbjct: 181 KSIVQDST 158

[Close]

BLAST of Clc11G13180 vs. ExPASy TrEMBL
Match: A0A1S4DZN3 (uncharacterized protein At4g30180 OS=Cucumis melo OX=3656 GN=LOC103492789 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.7e-60
Identity = 152/197 (77.16%), Postives = 167/197 (84.77%), Query Frame = 0


Query: 1   MGRQIVRKGSRRVFSLEPNKVAYTMFARNYVKYLMTSLVKISHHQQQKNFQKLVKFEVDM 60
           M R+IVRKG RRVFS+EPNKVAYTMFARNYVK+LMTSLVKISH QQQ+NFQKLV+FEVDM
Sbjct: 1   MVRKIVRKG-RRVFSIEPNKVAYTMFARNYVKHLMTSLVKISHQQQQQNFQKLVRFEVDM 60

Query: 61  AMALSASEFAWGIALKKKLLQRE-----VGNGNENGFDFSLQTVKFSQEEEEEEEEEEEE 120
           AMA SASEF+WGIALKKKLLQR+     +GNG+ENGFDFSLQT+K    +    EEE+  
Sbjct: 61  AMAQSASEFSWGIALKKKLLQRDDQQEVLGNGSENGFDFSLQTMKKISHKNLGNEEEDHH 120

Query: 121 EEEEEEEEEEEEEEEEEEKMENGLMKLRKIIPGGSDFNVGGL---EEDDLLKQTESYVKC 180
           E+EEEEEEEEEEE      MENGLMKLRKIIPGG DF++GG    EEDDLLKQTESYVKC
Sbjct: 121 EDEEEEEEEEEEE------MENGLMKLRKIIPGGDDFSIGGNNLDEEDDLLKQTESYVKC 180

Query: 181 LELQVNVLRGLVETNTF 190
           LELQVNVLRGLVETNTF
Sbjct: 181 LELQVNVLRGLVETNTF 190

[Close]

BLAST of Clc11G13180 vs. ExPASy TrEMBL
Match: A0A0A0LJA7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060350 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 3.1e-59
Identity = 147/194 (75.77%), Postives = 164/194 (84.54%), Query Frame = 0


Query: 1   MGRQIVRKGSRRVFSLEPNKVAYTMFARNYVKYLMTSLVKISHHQQQKNFQKLVKFEVDM 60
           M R++VRKG RRVFS+EP+KVAYTMF RNYVK+LMTSLVKISH QQQ+NF+KLVKFEVDM
Sbjct: 1   MVRKMVRKG-RRVFSIEPSKVAYTMFERNYVKHLMTSLVKISHQQQQQNFRKLVKFEVDM 60

Query: 61  AMALSASEFAWGIALKKKLLQRE---VGNGNENGFDFSLQTVKFSQEEEEEEEEEEEEEE 120
           AMA SASEF+WGIALKKKLLQR+   +GNGNENGFDFS+QTVK + +E    EEE+   E
Sbjct: 61  AMAQSASEFSWGIALKKKLLQRDQQVLGNGNENGFDFSVQTVKKTSQENLGNEEEDHHHE 120

Query: 121 EEEEEEEEEEEEEEEEKMENGLMKLRKIIPGGSDFNVGGL--EEDDLLKQTESYVKCLEL 180
           EEEEEEEE         MENGLMKLRKIIPGG +F++GG   EEDDLLKQTESYVKCLEL
Sbjct: 121 EEEEEEEE---------MENGLMKLRKIIPGGDNFSIGGNLDEEDDLLKQTESYVKCLEL 180

Query: 181 QVNVLRGLVETNTF 190
           QVNVLRGLVETNTF
Sbjct: 181 QVNVLRGLVETNTF 184

[Close]

BLAST of Clc11G13180 vs. ExPASy TrEMBL
Match: A0A6J1FJ33 (transcription factor bHLH146-like OS=Cucurbita moschata OX=3662 GN=LOC111444354 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 7.5e-53
Identity = 138/191 (72.25%), Postives = 152/191 (79.58%), Query Frame = 0


Query: 1   MGRQIVRKGSRRVFSLEPNKVAYTMFARNYVKYLMTSLVKISHHQQQ---KNFQKLVKFE 60
           MGRQI+RK  +RV SLEPNK+AYTMFARNYVKYLMTSL KISHH QQ   +NFQKLVKFE
Sbjct: 1   MGRQILRK-RKRVLSLEPNKLAYTMFARNYVKYLMTSLPKISHHHQQHQEQNFQKLVKFE 60

Query: 61  VDMAMALSASEFAWGIALKKKLLQREVGNGNENGFDFSLQTVKFSQEEEEEEEEEEEEEE 120
           VDMAMA SA+EF+WG ALKKKLLQRE GNG+ NGF  SLQ VKFS+           E  
Sbjct: 61  VDMAMAQSATEFSWGNALKKKLLQREDGNGS-NGFGLSLQRVKFSR-----------ENL 120

Query: 121 EEEEEEEEEEEEEEEEKMENGLMKLRKIIPGGSDFNVGGLEEDDLLKQTESYVKCLELQV 180
           E E+EE EE EE EE K+ENGLMKLRKI+PGGS+   G LEEDDL KQTESY+KCLELQV
Sbjct: 121 EREDEEHEEREEHEERKIENGLMKLRKIVPGGSN---GELEEDDLFKQTESYIKCLELQV 175

Query: 181 NVLRGLVETNT 189
           NVLR LV+TNT
Sbjct: 181 NVLRCLVDTNT 175

[Close]

BLAST of Clc11G13180 vs. ExPASy TrEMBL
Match: A0A6J1I0E6 (transcription factor bHLH146-like OS=Cucurbita maxima OX=3661 GN=LOC111468586 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 2.0e-50
Identity = 138/191 (72.25%), Postives = 153/191 (80.10%), Query Frame = 0


Query: 1   MGRQIVRKGSRRVFSLEPNKVAYTMFARNYVKYLMTSLVKISHH---QQQKNFQKLVKFE 60
           MGRQI+RK  +RV SLEP+K+AYTMFARNYVKYLMTSL KISHH    QQ+NFQKLVKFE
Sbjct: 1   MGRQILRK-RKRVLSLEPDKLAYTMFARNYVKYLMTSLPKISHHHQQHQQQNFQKLVKFE 60

Query: 61  VDMAMALSASEFAWGIALKKKLLQREVGNGNENGFDFSLQTVKFSQEEEEEEEEEEEEEE 120
           VDMAMA SA+EF+WG ALKKKLLQRE  NG+ NGF FSL  VKFS+        E  E E
Sbjct: 61  VDMAMAQSATEFSWGNALKKKLLQREDDNGS-NGFGFSL-PVKFSR--------ENLERE 120

Query: 121 EEEEEEEEEEEEEEEEKMENGLMKLRKIIPGGSDFNVGGLEEDDLLKQTESYVKCLELQV 180
           +EE EE EE EE EE K+ENGLMKLRKI+PGGS+   G LEEDDL KQTESY+KCLELQV
Sbjct: 121 DEEHEEHEEHEEREERKIENGLMKLRKIVPGGSN---GELEEDDLFKQTESYIKCLELQV 177

Query: 181 NVLRGLVETNT 189
           NVLR LV+TNT
Sbjct: 181 NVLRCLVDTNT 177

[Close]

BLAST of Clc11G13180 vs. ExPASy TrEMBL
Match: A0A6J1DIU0 (transcription factor bHLH146 OS=Momordica charantia OX=3673 GN=LOC111020869 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.7e-49
Identity = 131/193 (67.88%), Postives = 147/193 (76.17%), Query Frame = 0


Query: 1   MGRQIVRKGSRRVFSLEPNKVAYTMFARNYVKYLMTSLVKISHHQQQKNFQKLVKFEVDM 60
           MGRQIVRK  RRVFSLEPNK+ Y MFARNY K LM SL KIS + Q  N QK+VKFEVDM
Sbjct: 1   MGRQIVRK-RRRVFSLEPNKLVYIMFARNYAKNLMASLSKISPNHQ--NLQKVVKFEVDM 60

Query: 61  AMALSASEFAWGIALKKKLLQR-EVGNGN-ENGFDFSLQTVKFSQEEEEEEEEEEEEEEE 120
           AMALSASEFAWG ALK+KLLQ+ E GNGN  N FDFSLQT+KFS+               
Sbjct: 61  AMALSASEFAWGHALKQKLLQKQENGNGNGRNSFDFSLQTLKFSR--------------- 120

Query: 121 EEEEEEEEEEEEEEEKMENGLMKLRKIIPGG---SDFNVGGLEEDDLLKQTESYVKCLEL 180
               E+EEEEEE+++KMENGL+KLRKI+PGG   +D N   LEEDDLLKQTESY+KCLEL
Sbjct: 121 ----EKEEEEEEDKKKMENGLVKLRKILPGGENNNDSNGDLLEEDDLLKQTESYIKCLEL 171

Query: 181 QVNVLRGLVETNT 189
           QVNVLR LV+TNT
Sbjct: 181 QVNVLRCLVDTNT 171

[Close]

BLAST of Clc11G13180 vs. TAIR 10
Match: AT2G18969.1 (BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;transcription regulators (TAIR:AT4G30180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 69.3 bits (168), Expect = 3.7e-12
Identity = 71/193 (36.79%), Postives = 112/193 (58.03%), Query Frame = 0


Query: 1   MGRQIVRKGSRRVFSLEPNKVAYTMFARNYVKYLMTSLVKI-----SHHQQQKNFQKLVK 60
           M RQI+ K  +RVFSL+PNK    +FAR YV +L+ +L KI     S    +++ ++ VK
Sbjct: 1   MERQIINK-RKRVFSLQPNKNPKAVFARRYVSHLVPALKKINMNKSSSKTNKQSLEQTVK 60

Query: 61  FEVDMAMALSASEFAWGIALKKKLLQREVGNGNENGFDFSLQTVKFSQEEEEEEEEEEEE 120
            EVDMA ALSA EFAW   L++KLL         + +D  + T          E  E   
Sbjct: 61  HEVDMAFALSAQEFAWSRFLQQKLL--------SSPYDDPIST-----SSSPSEILERSS 120

Query: 121 EEEEEEEEEEEEEEEEEEKMENGLMKLRKIIPGGSDFNVGGLEEDDLLKQTESYVKCLEL 180
           + +  E+ ++ +EEEE  +++  L +L+K++PGG + N+     +++L +  SY+ CLEL
Sbjct: 121 KRQGGEKHQDSDEEEEGGEIKKRLKELQKLLPGGEEMNM-----EEILSEIGSYIVCLEL 174

Query: 181 QVNVLRGLVETNT 189
           Q+ VL+ +V+ NT
Sbjct: 181 QMIVLKSIVQDNT 174

[Close]

BLAST of Clc11G13180 vs. TAIR 10
Match: AT4G30180.1 (sequence-specific DNA binding transcription factors;transcription regulators )

HSP 1 Score: 50.1 bits (118), Expect = 2.3e-06
Identity = 62/188 (32.98%), Postives = 96/188 (51.06%), Query Frame = 0


Query: 1   MGRQIVRKGSRRVFSLEPNKVAYTMFARNYVKYLMTSLVKISHHQQQKNFQKLVKFEVDM 60
           M RQI+ +  +RVFSLEPNK    +F R Y  +L+ +L K+  +  + + ++ VK EVDM
Sbjct: 1   MERQIINR-KKRVFSLEPNKNPSAVFTRKYTSHLVPALKKL--NMNKNSSKQTVKHEVDM 60

Query: 61  AMALSASEFAWGIALKKKLLQREVGNGNENGFDFSLQTVKFSQEEEEEEEEEEEEEEEEE 120
           A+ALSA EFAW   L +KL                      S             +    
Sbjct: 61  ALALSAQEFAWSRFLLQKL----------------------SSSSNPTTTTSSSSDGIRI 120

Query: 121 EEEEEEEEEEEEEKMENGLMKLRKIIPGGSDFNVGGLEEDDLLKQTESYVKCLELQVNVL 180
            E  ++E   EE  +E  L +L+K++PGG + NV     +++L +  +Y+KCLELQ   L
Sbjct: 121 LERPDKEGGNEEGGIEERLRELKKLLPGGEEMNV-----EEMLSEIGNYIKCLELQTIAL 158

Query: 181 RGLVETNT 189
           + +V+ +T
Sbjct: 181 KSIVQDST 158

The following BLAST results are available for this feature:

BLAST of Clc11G13180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877916.1	1.2e-60	76.53	transcription factor bHLH146-like [Benincasa hispida]	[more]
XP_016901419.1	3.4e-60	77.16	PREDICTED: uncharacterized protein At4g30180 [Cucumis melo]	[more]
XP_011648935.1	6.5e-59	75.77	transcription factor bHLH146 [Cucumis sativus] >KGN61154.1 hypothetical protein ...	[more]
XP_023538247.1	1.4e-53	72.25	transcription factor bHLH146-like [Cucurbita pepo subsp. pepo]	[more]
XP_022938205.1	1.5e-52	72.25	transcription factor bHLH146-like [Cucurbita moschata]	[more]

BLAST of Clc11G13180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SUM5	3.3e-05	32.98	Transcription factor bHLH146 OS=Arabidopsis thaliana OX=3702 GN=BHLH146 PE=2 SV=...	[more]

BLAST of Clc11G13180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DZN3	1.7e-60	77.16	uncharacterized protein At4g30180 OS=Cucumis melo OX=3656 GN=LOC103492789 PE=4 S...	[more]
A0A0A0LJA7	3.1e-59	75.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060350 PE=4 SV=1	[more]
A0A6J1FJ33	7.5e-53	72.25	transcription factor bHLH146-like OS=Cucurbita moschata OX=3662 GN=LOC111444354 ...	[more]
A0A6J1I0E6	2.0e-50	72.25	transcription factor bHLH146-like OS=Cucurbita maxima OX=3661 GN=LOC111468586 PE...	[more]
A0A6J1DIU0	1.7e-49	67.88	transcription factor bHLH146 OS=Momordica charantia OX=3673 GN=LOC111020869 PE=4...	[more]

BLAST of Clc11G13180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G18969.1	3.7e-12	36.79	BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transc...	[more]
AT4G30180.1	2.3e-06	32.98	sequence-specific DNA binding transcription factors;transcription regulators	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 96..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..136
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..134
None	No IPR available	PANTHER	PTHR33124:SF42	TRANSCRIPTION FACTOR BHLH146	coord: 10..188
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 10..188

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G13180.1	Clc11G13180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity