Clc11G13130 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G13130
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	60S acidic ribosomal protein P3
Location	ClcChr11: 23336900 .. 23337872 (-)
RNA-Seq Expression	Clc11G13130
Synteny	Clc11G13130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGTTTTCACCTTCGTCTGTCGGAGCTCCGGTGGTAAGTGGACCGCCAACCAGTATTCCGGTGACCTTGAAGGCTCTGCCGACTCCACCTACGAGCTCCAGAGGAAGCTCGTTCAATCTGCTCTCTCCGTCGATTCCTCCGGTGGTGTTCAGTCCTCTTTCTCTCTCATTACTCCCACCTCCGCCGTTTTCCAGGTATTCACCGTTTTCTCTGTTATTCTGGTTTTTCATTCCTCTCGATCTGATGCGTTTACTCTTCAATTTTTTATTATAAACTCGCCTACTCAATGTTTATTTGATTGTTTAGCCTGGTTAGTAATCTTTTTGTCTGTATGAATAGGGTCGATCTTTTTTTTTCCCGTAGTTTTTACCTCTTTTGTGTATGTTTGATCTTTATGTTGATGTTTTAACAATTACGATTATGGTTTCTGGGTACATGATCGATTAAGCAGCTTTTGATTACGGGAATTTTCCAATTATATGGTCTTATAATGAATTAAAGCATTGTTGGTAATCATACTTTTAGTATGTTAATTGGAGAGTTCCTTAATTAGTTTATAACTTATCTGCATTCACTCATCGAATTCAACCTTCTCTGGATAAGGTCTAACATATTTCAAGAAAAATGTGTAATGTCTTGTCATAGTTTTTCCGAGTTTGCAGAAATATTTGGAAGAAGTTGGTTGGGTTTTTTTTCCTTAACTCTGTTTATGATTTATGATATCTCCTCGAGTAGCTTCTTCCTTGCTTGCCTGTTGTTATCTGTTGTGTGTGCCTAGTTTAAACATTAGTGTTTCAGGTGATCGTTGGCGGTGGCAGTGGTGGCGGTTTCATTGGTGGTGGTGGAGGAGCTGCAGCCGCCCCTGCTGGAGGAGATGCTCCAGCTGCTGCAGAAGCCCCAGCTGAGAAGAAGGAAGAGGTGAAGGAAGAGAGTGATGATGATGACCTTGGCCTATCACTTTTTGATTAG

mRNA sequence

ATGGGAGTTTTCACCTTCGTCTGTCGGAGCTCCGGTGGTAAGTGGACCGCCAACCAGTATTCCGGTGACCTTGAAGGCTCTGCCGACTCCACCTACGAGCTCCAGAGGAAGCTCGTTCAATCTGCTCTCTCCGTCGATTCCTCCGGTGGTGTTCAGTCCTCTTTCTCTCTCATTACTCCCACCTCCGCCGTTTTCCAGGTATTCACCGTTTTCTCTGTTATTCTGGTTTTTCATTCCTCTCGATCTGATGCGTTTACTCTTCAATTTTTTATTATAAACTCGCCTACTCAATGTTTATTTGATTGTTTAGCCTGGTTAGTAATCTTTTTGTCTGTGATCGTTGGCGGTGGCAGTGGTGGCGGTTTCATTGGTGGTGGTGGAGGAGCTGCAGCCGCCCCTGCTGGAGGAGATGCTCCAGCTGCTGCAGAAGCCCCAGCTGAGAAGAAGGAAGAGGTGAAGGAAGAGAGTGATGATGATGACCTTGGCCTATCACTTTTTGATTAG

Coding sequence (CDS)

ATGGGAGTTTTCACCTTCGTCTGTCGGAGCTCCGGTGGTAAGTGGACCGCCAACCAGTATTCCGGTGACCTTGAAGGCTCTGCCGACTCCACCTACGAGCTCCAGAGGAAGCTCGTTCAATCTGCTCTCTCCGTCGATTCCTCCGGTGGTGTTCAGTCCTCTTTCTCTCTCATTACTCCCACCTCCGCCGTTTTCCAGGTATTCACCGTTTTCTCTGTTATTCTGGTTTTTCATTCCTCTCGATCTGATGCGTTTACTCTTCAATTTTTTATTATAAACTCGCCTACTCAATGTTTATTTGATTGTTTAGCCTGGTTAGTAATCTTTTTGTCTGTGATCGTTGGCGGTGGCAGTGGTGGCGGTTTCATTGGTGGTGGTGGAGGAGCTGCAGCCGCCCCTGCTGGAGGAGATGCTCCAGCTGCTGCAGAAGCCCCAGCTGAGAAGAAGGAAGAGGTGAAGGAAGAGAGTGATGATGATGACCTTGGCCTATCACTTTTTGATTAG

Protein sequence

MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITPTSAVFQVFTVFSVILVFHSSRSDAFTLQFFIINSPTQCLFDCLAWLVIFLSVIVGGGSGGGFIGGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSLFD

Homology

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BLAST of Clc11G13130 vs. NCBI nr
Match: XP_038889531.1 (60S acidic ribosomal protein P3-2 [Benincasa hispida])

HSP 1 Score: 196.1 bits (497), Expect = 2.5e-46
Identity = 119/167 (71.26%), Postives = 120/167 (71.86%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFS ITP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  TSAVFQVFTVFSVILVFHSSRSDAFTLQFFIINSPTQCLFDCLAWLVIFLSVIVGGGSGG 120
           TSAVFQ                                             VIVGGG GG
Sbjct: 61  TSAVFQ---------------------------------------------VIVGGGGGG 120

Query: 121 GFIGGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSLFD 168
           GFIGGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDD+DLGLSLFD
Sbjct: 121 GFIGGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSLFD 122

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BLAST of Clc11G13130 vs. NCBI nr
Match: XP_008451467.1 (PREDICTED: 60S acidic ribosomal protein P3-2 [Cucumis melo] >KAA0048624.1 60S acidic ribosomal protein P3-2 [Cucumis melo var. makuwa] >TYK01401.1 60S acidic ribosomal protein P3-2 [Cucumis melo var. makuwa])

HSP 1 Score: 188.0 bits (476), Expect = 6.8e-44
Identity = 117/167 (70.06%), Postives = 118/167 (70.66%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFS ITP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  TSAVFQVFTVFSVILVFHSSRSDAFTLQFFIINSPTQCLFDCLAWLVIFLSVIVGGGSGG 120
           TSAVFQ                                             VIVGGG GG
Sbjct: 61  TSAVFQ---------------------------------------------VIVGGGGGG 120

Query: 121 GFIGGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSLFD 168
           GFI  GGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDD+DLGLSLFD
Sbjct: 121 GFI--GGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSLFD 120

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BLAST of Clc11G13130 vs. NCBI nr
Match: XP_004148320.1 (60S acidic ribosomal protein P3-2 [Cucumis sativus] >KGN61159.1 hypothetical protein Csa_021210 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 3.7e-42
Identity = 115/167 (68.86%), Postives = 117/167 (70.06%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFS ITP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  TSAVFQVFTVFSVILVFHSSRSDAFTLQFFIINSPTQCLFDCLAWLVIFLSVIVGGGSGG 120
           +SAVFQ                                             VIVGGGSGG
Sbjct: 61  SSAVFQ---------------------------------------------VIVGGGSGG 120

Query: 121 GFIGGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSLFD 168
           GF   GGGAAAAPAGG APAAAEAPAEKKEEVKEESDD+DLGLSLFD
Sbjct: 121 GF-SAGGGAAAAPAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSLFD 121

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BLAST of Clc11G13130 vs. NCBI nr
Match: XP_022929782.1 (60S acidic ribosomal protein P3-2-like [Cucurbita moschata] >XP_022997309.1 60S acidic ribosomal protein P3-2-like [Cucurbita maxima] >XP_023521367.1 60S acidic ribosomal protein P3-2-like [Cucurbita pepo subsp. pepo] >XP_023545674.1 60S acidic ribosomal protein P3-2-like [Cucurbita pepo subsp. pepo] >KAG6598882.1 60S acidic ribosomal protein P3-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029833.1 60S acidic ribosomal protein P3-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 179.5 bits (454), Expect = 2.4e-41
Identity = 110/167 (65.87%), Postives = 115/167 (68.86%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVFTF+CRSSGGKWTANQYSGDLEGSADSTY+LQR LVQ+ LSVD SGGVQSSFS +TP
Sbjct: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60

Query: 61  TSAVFQVFTVFSVILVFHSSRSDAFTLQFFIINSPTQCLFDCLAWLVIFLSVIVGGGSGG 120
           TSAVFQ                                             VI+GG SGG
Sbjct: 61  TSAVFQ---------------------------------------------VIIGGSSGG 120

Query: 121 GFIGGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSLFD 168
           GFI GGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLG SLFD
Sbjct: 121 GFI-GGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLFD 121

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BLAST of Clc11G13130 vs. NCBI nr
Match: XP_022153281.1 (60S acidic ribosomal protein P3-2 [Momordica charantia])

HSP 1 Score: 160.2 bits (404), Expect = 1.5e-35
Identity = 105/167 (62.87%), Postives = 111/167 (66.47%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVFTFVCRSSG +WTA QYSGDLEGSA STYELQRKLVQ+AL+VDSSGGVQSSFS I+P
Sbjct: 1   MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISP 60

Query: 61  TSAVFQVFTVFSVILVFHSSRSDAFTLQFFIINSPTQCLFDCLAWLVIFLSVIVGGGSGG 120
           TSAVFQ                                             VI+GGG GG
Sbjct: 61  TSAVFQ---------------------------------------------VIIGGGGGG 120

Query: 121 GFIGGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSLFD 168
           GFI GGG AAAAP+GG AP AAEAPAEKKEE KEES DDDLGLSLFD
Sbjct: 121 GFISGGGAAAAAPSGGAAP-AAEAPAEKKEEEKEES-DDDLGLSLFD 120

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BLAST of Clc11G13130 vs. ExPASy Swiss-Prot
Match: Q9LVC9 (60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana OX=3702 GN=RPP3B PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.3e-26
Identity = 79/166 (47.59%), Postives = 94/166 (56.63%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVF+FVC+S GG+WTA Q+ GDLE SA STY+LQRKLVQ+ALS DSSGGVQSSFSL++P
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61  TSAVFQVFTVFSVILVFHSSRSDAFTLQFFIINSPTQCLFDCLAWLVIFLSVIVGGGSGG 120
           TSAVF                                              V++GGG GG
Sbjct: 61  TSAVF---------------------------------------------VVVIGGGGGG 119

Query: 121 GFIGGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSLF 167
           GF  GGG AA    GG+A AA +   +KKEE +EE  + D G  LF
Sbjct: 121 GFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEEE--EGDFGFDLF 119

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BLAST of Clc11G13130 vs. ExPASy Swiss-Prot
Match: Q9SVZ6 (60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana OX=3702 GN=RPP3A PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 8.1e-24
Identity = 78/167 (46.71%), Postives = 93/167 (55.69%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVFTFVC++ GG W+A Q+ G+LE SA STYELQRKLVQ +LS DSSGGVQSSFSL++P
Sbjct: 1   MGVFTFVCKNGGGAWSAKQHEGELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSP 60

Query: 61  TSAVFQVFTVFSVILVFHSSRSDAFTLQFFIINSPTQCLFDCLAWLVIFLSVIVGGGSGG 120
           TSAVFQ                                             VIVGGG GG
Sbjct: 61  TSAVFQ---------------------------------------------VIVGGGGGG 118

Query: 121 GFIGGGGGAAAAPAGGDAPAAAEAPAE-KKEEVKEESDDDDLGLSLF 167
           GF  GG    AA +GG A  AA AP E +K++ + E ++ D G  LF
Sbjct: 121 GFSAGG----AASSGGGAGEAAAAPKEDEKKKEESEEEEGDFGFDLF 118

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BLAST of Clc11G13130 vs. ExPASy Swiss-Prot
Match: O24413 (60S acidic ribosomal protein P3 OS=Zea mays OX=4577 GN=RPP3A PE=1 SV=3)

HSP 1 Score: 108.2 bits (269), Expect = 9.0e-23
Identity = 75/168 (44.64%), Postives = 96/168 (57.14%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGV+TFVCR++GG+WTA Q+SG++E SA + YELQR+LV +A + DS  GVQSSFS++TP
Sbjct: 1   MGVYTFVCRNNGGEWTAKQHSGEIEASAATPYELQRRLVAAASAADSRYGVQSSFSMVTP 60

Query: 61  TSAVFQVFTVFSVILVFHSSRSDAFTLQFFIINSPTQCLFDCLAWLVIFLSVIVGG-GSG 120
           +SAVFQ                                             VIVG  G G
Sbjct: 61  SSAVFQ---------------------------------------------VIVGAVGGG 120

Query: 121 GGFIGGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSLFD 168
              + GGGG  AA +GG   AAAEAP E+K+E ++E  DDD+G SLFD
Sbjct: 121 AMMVSGGGGGGAAASGG---AAAEAPKEEKKEEEKEESDDDMGFSLFD 120

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BLAST of Clc11G13130 vs. ExPASy Swiss-Prot
Match: P56724 (60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0701400 PE=3 SV=3)

HSP 1 Score: 104.8 bits (260), Expect = 9.9e-22
Identity = 79/169 (46.75%), Postives = 93/169 (55.03%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGV+TFVCRSSG +WTA Q  G+LE SA + YELQR+LV +A + DS+ GVQSSFS+++P
Sbjct: 1   MGVYTFVCRSSGDEWTAKQLKGELEASAATPYELQRRLVAAASAADSAAGVQSSFSMVSP 60

Query: 61  TSAVFQVFTVFSVILVFHSSRSDAFTLQFFIINSPTQCLFDCLAWLVIFLSVIVGGGSGG 120
           +SAVFQ                                             VI+G   GG
Sbjct: 61  SSAVFQ---------------------------------------------VIIGAVGGG 119

Query: 121 GFIGGGGGAAAAPAGGDAPAAAEAP--AEKKEEVKEESDDDDLGLSLFD 168
             IGGG  A AA  G    AAAEAP   EKKEE KEES +DDLG SLFD
Sbjct: 121 AAIGGGAAAGAASGG----AAAEAPKAEEKKEEEKEES-EDDLGFSLFD 119

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BLAST of Clc11G13130 vs. ExPASy TrEMBL
Match: A0A5D3BNN6 (60S acidic ribosomal protein P3-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G00960 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 3.3e-44
Identity = 117/167 (70.06%), Postives = 118/167 (70.66%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFS ITP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  TSAVFQVFTVFSVILVFHSSRSDAFTLQFFIINSPTQCLFDCLAWLVIFLSVIVGGGSGG 120
           TSAVFQ                                             VIVGGG GG
Sbjct: 61  TSAVFQ---------------------------------------------VIVGGGGGG 120

Query: 121 GFIGGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSLFD 168
           GFI  GGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDD+DLGLSLFD
Sbjct: 121 GFI--GGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSLFD 120

[Close]

BLAST of Clc11G13130 vs. ExPASy TrEMBL
Match: A0A1S3BRK9 (60S acidic ribosomal protein P3-2 OS=Cucumis melo OX=3656 GN=LOC103492742 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 3.3e-44
Identity = 117/167 (70.06%), Postives = 118/167 (70.66%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFS ITP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  TSAVFQVFTVFSVILVFHSSRSDAFTLQFFIINSPTQCLFDCLAWLVIFLSVIVGGGSGG 120
           TSAVFQ                                             VIVGGG GG
Sbjct: 61  TSAVFQ---------------------------------------------VIVGGGGGG 120

Query: 121 GFIGGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSLFD 168
           GFI  GGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDD+DLGLSLFD
Sbjct: 121 GFI--GGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSLFD 120

[Close]

BLAST of Clc11G13130 vs. ExPASy TrEMBL
Match: A0A0A0LJB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060400 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.8e-42
Identity = 115/167 (68.86%), Postives = 117/167 (70.06%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFS ITP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  TSAVFQVFTVFSVILVFHSSRSDAFTLQFFIINSPTQCLFDCLAWLVIFLSVIVGGGSGG 120
           +SAVFQ                                             VIVGGGSGG
Sbjct: 61  SSAVFQ---------------------------------------------VIVGGGSGG 120

Query: 121 GFIGGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSLFD 168
           GF   GGGAAAAPAGG APAAAEAPAEKKEEVKEESDD+DLGLSLFD
Sbjct: 121 GF-SAGGGAAAAPAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSLFD 121

[Close]

BLAST of Clc11G13130 vs. ExPASy TrEMBL
Match: A0A6J1KB28 (60S acidic ribosomal protein P3-2-like OS=Cucurbita maxima OX=3661 GN=LOC111492258 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.2e-41
Identity = 110/167 (65.87%), Postives = 115/167 (68.86%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVFTF+CRSSGGKWTANQYSGDLEGSADSTY+LQR LVQ+ LSVD SGGVQSSFS +TP
Sbjct: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60

Query: 61  TSAVFQVFTVFSVILVFHSSRSDAFTLQFFIINSPTQCLFDCLAWLVIFLSVIVGGGSGG 120
           TSAVFQ                                             VI+GG SGG
Sbjct: 61  TSAVFQ---------------------------------------------VIIGGSSGG 120

Query: 121 GFIGGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSLFD 168
           GFI GGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLG SLFD
Sbjct: 121 GFI-GGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLFD 121

[Close]

BLAST of Clc11G13130 vs. ExPASy TrEMBL
Match: A0A6J1ENN1 (60S acidic ribosomal protein P3-2-like OS=Cucurbita moschata OX=3662 GN=LOC111436268 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.2e-41
Identity = 110/167 (65.87%), Postives = 115/167 (68.86%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVFTF+CRSSGGKWTANQYSGDLEGSADSTY+LQR LVQ+ LSVD SGGVQSSFS +TP
Sbjct: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60

Query: 61  TSAVFQVFTVFSVILVFHSSRSDAFTLQFFIINSPTQCLFDCLAWLVIFLSVIVGGGSGG 120
           TSAVFQ                                             VI+GG SGG
Sbjct: 61  TSAVFQ---------------------------------------------VIIGGSSGG 120

Query: 121 GFIGGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSLFD 168
           GFI GGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLG SLFD
Sbjct: 121 GFI-GGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLFD 121

[Close]

BLAST of Clc11G13130 vs. TAIR 10
Match: AT5G57290.3 (60S acidic ribosomal protein family )

HSP 1 Score: 120.6 bits (301), Expect = 1.2e-27
Identity = 79/166 (47.59%), Postives = 94/166 (56.63%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVF+FVC+S GG+WTA Q+ GDLE SA STY+LQRKLVQ+ALS DSSGGVQSSFSL++P
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61  TSAVFQVFTVFSVILVFHSSRSDAFTLQFFIINSPTQCLFDCLAWLVIFLSVIVGGGSGG 120
           TSAVF                                              V++GGG GG
Sbjct: 61  TSAVF----------------------------------------------VVIGGGGGG 118

Query: 121 GFIGGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSLF 167
           GF  GGG AA    GG+A AA +   +KKEE +EE  + D G  LF
Sbjct: 121 GFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEEE--EGDFGFDLF 118

[Close]

BLAST of Clc11G13130 vs. TAIR 10
Match: AT5G57290.1 (60S acidic ribosomal protein family )

HSP 1 Score: 120.2 bits (300), Expect = 1.6e-27
Identity = 79/166 (47.59%), Postives = 94/166 (56.63%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVF+FVC+S GG+WTA Q+ GDLE SA STY+LQRKLVQ+ALS DSSGGVQSSFSL++P
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61  TSAVFQVFTVFSVILVFHSSRSDAFTLQFFIINSPTQCLFDCLAWLVIFLSVIVGGGSGG 120
           TSAVF                                              V++GGG GG
Sbjct: 61  TSAVF---------------------------------------------VVVIGGGGGG 119

Query: 121 GFIGGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSLF 167
           GF  GGG AA    GG+A AA +   +KKEE +EE  + D G  LF
Sbjct: 121 GFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEEE--EGDFGFDLF 119

[Close]

BLAST of Clc11G13130 vs. TAIR 10
Match: AT4G25890.1 (60S acidic ribosomal protein family )

HSP 1 Score: 111.7 bits (278), Expect = 5.8e-25
Identity = 78/167 (46.71%), Postives = 93/167 (55.69%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVFTFVC++ GG W+A Q+ G+LE SA STYELQRKLVQ +LS DSSGGVQSSFSL++P
Sbjct: 1   MGVFTFVCKNGGGAWSAKQHEGELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSP 60

Query: 61  TSAVFQVFTVFSVILVFHSSRSDAFTLQFFIINSPTQCLFDCLAWLVIFLSVIVGGGSGG 120
           TSAVFQ                                             VIVGGG GG
Sbjct: 61  TSAVFQ---------------------------------------------VIVGGGGGG 118

Query: 121 GFIGGGGGAAAAPAGGDAPAAAEAPAE-KKEEVKEESDDDDLGLSLF 167
           GF  GG    AA +GG A  AA AP E +K++ + E ++ D G  LF
Sbjct: 121 GFSAGG----AASSGGGAGEAAAAPKEDEKKKEESEEEEGDFGFDLF 118

[Close]

BLAST of Clc11G13130 vs. TAIR 10
Match: AT5G57290.2 (60S acidic ribosomal protein family )

HSP 1 Score: 102.8 bits (255), Expect = 2.7e-22
Identity = 62/127 (48.82%), Postives = 72/127 (56.69%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVF+FVC+S GG+WTA Q+ GDLE SA STY+LQRKLVQ+ALS DSSGGVQSSFSL++P
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61  TSAVFQVFTVFSVILVFHSSRSDAFTLQFFIINSPTQCLFDCLAWLVIFLSVIVGGGSGG 120
           TSAVF                                              V++GGG GG
Sbjct: 61  TSAVF---------------------------------------------VVVIGGGGGG 82

Query: 121 GFIGGGG 128
           GF  GGG
Sbjct: 121 GFAAGGG 82

The following BLAST results are available for this feature:

BLAST of Clc11G13130 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889531.1	2.5e-46	71.26	60S acidic ribosomal protein P3-2 [Benincasa hispida]	[more]
XP_008451467.1	6.8e-44	70.06	PREDICTED: 60S acidic ribosomal protein P3-2 [Cucumis melo] >KAA0048624.1 60S ac...	[more]
XP_004148320.1	3.7e-42	68.86	60S acidic ribosomal protein P3-2 [Cucumis sativus] >KGN61159.1 hypothetical pro...	[more]
XP_022929782.1	2.4e-41	65.87	60S acidic ribosomal protein P3-2-like [Cucurbita moschata] >XP_022997309.1 60S ...	[more]
XP_022153281.1	1.5e-35	62.87	60S acidic ribosomal protein P3-2 [Momordica charantia]	[more]

BLAST of Clc11G13130 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LVC9	2.3e-26	47.59	60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana OX=3702 GN=RPP3B PE=2 ...	[more]
Q9SVZ6	8.1e-24	46.71	60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana OX=3702 GN=RPP3A PE=3 ...	[more]
O24413	9.0e-23	44.64	60S acidic ribosomal protein P3 OS=Zea mays OX=4577 GN=RPP3A PE=1 SV=3	[more]
P56724	9.9e-22	46.75	60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06...	[more]

BLAST of Clc11G13130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BNN6	3.3e-44	70.06	60S acidic ribosomal protein P3-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BRK9	3.3e-44	70.06	60S acidic ribosomal protein P3-2 OS=Cucumis melo OX=3656 GN=LOC103492742 PE=4 S...	[more]
A0A0A0LJB2	1.8e-42	68.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060400 PE=4 SV=1	[more]
A0A6J1KB28	1.2e-41	65.87	60S acidic ribosomal protein P3-2-like OS=Cucurbita maxima OX=3661 GN=LOC1114922...	[more]
A0A6J1ENN1	1.2e-41	65.87	60S acidic ribosomal protein P3-2-like OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]

BLAST of Clc11G13130 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57290.3	1.2e-27	47.59	60S acidic ribosomal protein family	[more]
AT5G57290.1	1.6e-27	47.59	60S acidic ribosomal protein family	[more]
AT4G25890.1	5.8e-25	46.71	60S acidic ribosomal protein family	[more]
AT5G57290.2	2.7e-22	48.82	60S acidic ribosomal protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 121..166 e-value: 4.6E-9 score: 36.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..167
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..167
IPR044252	60S acidic ribosomal protein P3-like	PANTHER	PTHR47207	60S ACIDIC RIBOSOMAL PROTEIN P3-1-RELATED	coord: 1..68 coord: 110..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G13130.2	Clc11G13130.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome