Clc11G10490 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G10490
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	protein FAR-RED ELONGATED HYPOCOTYL 3-like
Location	ClcChr11: 16232525 .. 16233713 (+)
RNA-Seq Expression	Clc11G10490
Synteny	Clc11G10490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCGAGGTAGACTAGAGGAGTCGTATAGCCATTTACATGCCTATAGTGAAGCCCAGCAGATTGTGAACCCTGGAATTGTGTTTGACTTGAAGCTTGATGATGGGAAATACTTCAGCTATGTCTTCATGGCCCTTGGCCAATGTATTAGGGGCTTTTTTAACTACATTAGGCGTGTGTTAGTTGCTGACAGAACACATCTACGTGGGAAGTTTAAAGTTGTCATGTTAAGTGTGAACTGAATGGACGGGAATGGTCAGATATACCCAATCGCGTTTGCTGTTGTAGACGATGAGACAGATGATGCATGGACATGGTTCTTTGCGATGGTGAAACTTGTCATCAGTGCGGTATCAGAATTTGTCATAGTATGGCAATTCGTAAGTTCTTTCCATTAACTTTTCATTGTTTCTGCATCCACCATATTGTTATGAATTTGACCACCCATTTTAAGAAACAAGTTGACATACATGCCTTCAATCTAGCGACCAAGGCATGTCGTGAAACGACTTTTCGAGTACAGTTGGCTAAAATTATTTCGTTTCGAAGAGTCACCCAGTATTTAGAGGAGGTGGGATTTGAATGATGGGCGCGGGCATTTTAGTGTGGTTGAAGGTTCGATCAGATGACGACTAATTGCGCTAAAAGCCAAAATGCCCTATTGAATGATGCTAGGACATTACCCATTACCAAATTCCTTGATCATTTGCGGGGTTTGTTGCAAGATTGGTTTTACAAGTGGCGAATGTGTGCATCTAGTCGTCAAACTATGCTTTTGAATTATGTGGAAAAAATTATGGCGAGGAGATGTTAGATCGAGAACACACGGTATCCGGCCTATTGATCATCATGTATATGAAGTCACAAACAACCACTTGGAGGCGAGGGAGGGGTTGTGGACTTTTGCATGCAAAAACATGCACTTGCAAGGAGTTTGATTATTATGAGATTCCTTGCTCCCATGCGATTGCGGTCACACATTATCGGATCATTGATCCATACACCTTCTATTCTCTGGCATATCACATACAAACTATTTATGGGGGATATGCAGAACCAATTTTCCCGGTAAGACCTTTGTTAGAGTGGAAGAGGTCAGATGCTTTTGTAGACATTGAGATCCTCCCACCAACGAGGGTTCCTCAAGTTGGTCGATGGCAAGAAATCAAGACACCATTTGTTAGGTGA

mRNA sequence

ATGGTTCGAGGTAGACTAGAGGAGTCGTATAGCCATTTACATGCCTATAGTGAAGCCCAGCAGATTGTGAACCCTGGAATTGTGTTTGACTTGAAGCTTGATGATGGGAAATACTTCAGCTATGTCTTCATGGCCCTTGGCCAATACGATGAGACAGATGATGCATGGACATGGTTCTTTGCGATGGTGAAACTTGTCATCAGTGCGGTATCAGAATTTGTCATAGTATGGCAATTCTCGTCAAACTATGCTTTTGAATTATGTGGAAAAAATTATGGCGAGGAGATGTTAGATCGAGAACACACGGTATCCGGCCTATTGATCATCATGTATATGAAGTCACAAACAACCACTTGGAGGCGAGGGAGGGGTTGTGGACTTTTGCATGCAAAAACATGCACTTGCAAGGAGTTTGATTATTATGAGATTCCTTGCTCCCATGCGATTGCGGTCACACATTATCGGATCATTGATCCATACACCTTCTATTCTCTGGCATATCACATACAAACTATTTATGGGGGATATGCAGAACCAATTTTCCCGGTAAGACCTTTGTTAGAGTGGAAGAGGTCAGATGCTTTTGTAGACATTGAGATCCTCCCACCAACGAGGGTTCCTCAAGTTGGTCGATGGCAAGAAATCAAGACACCATTTGTTAGGTGA

Coding sequence (CDS)

ATGGTTCGAGGTAGACTAGAGGAGTCGTATAGCCATTTACATGCCTATAGTGAAGCCCAGCAGATTGTGAACCCTGGAATTGTGTTTGACTTGAAGCTTGATGATGGGAAATACTTCAGCTATGTCTTCATGGCCCTTGGCCAATACGATGAGACAGATGATGCATGGACATGGTTCTTTGCGATGGTGAAACTTGTCATCAGTGCGGTATCAGAATTTGTCATAGTATGGCAATTCTCGTCAAACTATGCTTTTGAATTATGTGGAAAAAATTATGGCGAGGAGATGTTAGATCGAGAACACACGGTATCCGGCCTATTGATCATCATGTATATGAAGTCACAAACAACCACTTGGAGGCGAGGGAGGGGTTGTGGACTTTTGCATGCAAAAACATGCACTTGCAAGGAGTTTGATTATTATGAGATTCCTTGCTCCCATGCGATTGCGGTCACACATTATCGGATCATTGATCCATACACCTTCTATTCTCTGGCATATCACATACAAACTATTTATGGGGGATATGCAGAACCAATTTTCCCGGTAAGACCTTTGTTAGAGTGGAAGAGGTCAGATGCTTTTGTAGACATTGAGATCCTCCCACCAACGAGGGTTCCTCAAGTTGGTCGATGGCAAGAAATCAAGACACCATTTGTTAGGTGA

Protein sequence

MVRGRLEESYSHLHAYSEAQQIVNPGIVFDLKLDDGKYFSYVFMALGQYDETDDAWTWFFAMVKLVISAVSEFVIVWQFSSNYAFELCGKNYGEEMLDREHTVSGLLIIMYMKSQTTTWRRGRGCGLLHAKTCTCKEFDYYEIPCSHAIAVTHYRIIDPYTFYSLAYHIQTIYGGYAEPIFPVRPLLEWKRSDAFVDIEILPPTRVPQVGRWQEIKTPFVR

Homology

[Close]

BLAST of Clc11G10490 vs. NCBI nr
Match: XP_038889288.1 (uncharacterized protein LOC120079194 [Benincasa hispida])

HSP 1 Score: 122.1 bits (305), Expect = 6.1e-24
Identity = 56/97 (57.73%), Postives = 70/97 (72.16%), Query Frame = 0


Query: 124 GCGLLHAKTCTCKEFDYYEIPCSHAIAVTHYRIIDPYTFYSLAYHIQTIYGGYAEPIFPV 183
           G  +L+  TCTCK+F+YY++PCSH IA T YR IDPYT  SL Y+IQ +YG YA+PIF V
Sbjct: 30  GVVVLNVCTCTCKDFNYYDMPCSHVIAATRYRNIDPYTQCSLCYNIQVVYGLYAKPIFLV 89

Query: 184 RPLLEWKRSDAFVDIEILPPTRVPQVGRWQEIKTPFV 221
            P+LEW R D + DI+ILPP  V QVG   EI+ P +
Sbjct: 90  GPILEWPRGDDYKDIQILPPICVTQVGHHWEIRIPSI 126

[Close]

BLAST of Clc11G10490 vs. NCBI nr
Match: XP_022157996.1 (uncharacterized protein LOC111024593 [Momordica charantia])

HSP 1 Score: 107.8 bits (268), Expect = 1.2e-19
Identity = 87/299 (29.10%), Postives = 119/299 (39.80%), Query Frame = 0


Query: 1   MVRGRLEESYSHLHAYSEAQQIVNPGIVFDLKLDDGKYFSYVFMALGQY----------- 60
           +VRGR E+SY HLHAY+EA +I NP  +F ++ +    F Y+FMALG             
Sbjct: 64  IVRGRPEDSYMHLHAYNEAIKIENPCAIFHIETEGSLNFKYLFMALGASIRGFQPITRRV 123

Query: 61  -------------------------------------DETDDAWTWFFAMVKLVISAVSE 120
                                                +E+D +W WF   +K +I    E
Sbjct: 124 IMVDGTHLKGKFRGVILIGVAMDGNNQIYPLAFGIVDNESDASWKWFMKNLKDMIGHPPE 183

Query: 121 FVIVW-QFSSNYAFELCGKNY--------------------GEEMLDREHTVSGLLIIM- 180
            V +  +  + Y +      Y                    G E   R + V      M 
Sbjct: 184 LVFISDRHDATYVYRKSQFTYYWNQILSVGSGSLAKYLQEIGVERWARCYQVGRRYENMT 243

Query: 181 ------YMKSQTTTWRRGRGC-------GL-----LHAKTCTCKEFDYYEIPCSHAIAVT 212
                 + KS   T +    C       GL     L+A+TCTC EF Y  IPCSHAIAV 
Sbjct: 244 TNSAESFEKSHRYTVKSVDWCMFHVEDGGLDGKADLNARTCTCMEFQYMGIPCSHAIAVA 303

[Close]

BLAST of Clc11G10490 vs. NCBI nr
Match: XP_022154963.1 (uncharacterized protein LOC111022107 [Momordica charantia])

HSP 1 Score: 104.8 bits (260), Expect = 1.0e-18
Identity = 54/131 (41.22%), Postives = 77/131 (58.78%), Query Frame = 0


Query: 91  NYGEEMLDREHTVSGLLIIMYMKSQTTTWRRG--RGCGLLHAKTCTCKEFDYYEIPCSHA 150
           +Y EEM+      +   I+M +       R G   G   L ++TCTC+EFDY+++PCSHA
Sbjct: 52  DYAEEMIXEASDNARXHIVMNIDXFNFEVRDGNLNGDVDLQSQTCTCREFDYFKVPCSHA 111

Query: 151 IAVTHYRIIDPYTFYSLAYHIQTIYGGYAEPIFPVRPLLEWKRSDAFVDIEILPPTRVPQ 210
           IA  + R I+PYT    AY + +   G AEPIFPV     WK S  FV+I++ PP +V +
Sbjct: 112 IAAANSRSINPYTLCDEAYTVNSWMLGCAEPIFPVGSSSTWKSSPGFVNIDVQPPKKVVR 171

Query: 211 VGRWQEIKTPF 220
           VGR Q ++ P+
Sbjct: 172 VGRRQTVRIPY 182

[Close]

BLAST of Clc11G10490 vs. NCBI nr
Match: XP_022159268.1 (uncharacterized protein LOC111025678 [Momordica charantia])

HSP 1 Score: 104.8 bits (260), Expect = 1.0e-18
Identity = 93/368 (25.27%), Postives = 129/368 (35.05%), Query Frame = 0


Query: 1   MVRGRLEESYSHLHAYSEAQQIVNPGIVFDLKLDDGKYFSYVFMALGQY----------- 60
           ++RG    SY  L AY EA +I+NPG +F+LKL+ GKYF YVFM LGQ            
Sbjct: 115 LIRGDPASSYGLLPAYGEALKIMNPGTIFELKLEGGKYFKYVFMTLGQSIRGFLGCTRPV 174

Query: 61  -------------------------------------DETDDAWTWFFAMVKLVISAVSE 120
                                                 ET  +W WF   +K  ++ V  
Sbjct: 175 LVVDGAHLKGKFRGVLLSASGVDANNQIYSVAFAIIDGETVASWVWFMIQIKRALAGVDN 234

Query: 121 FVIVWQ------------FSSNY-------------------------AFELCGKNYGEE 180
            V V              FS  +                          F    K Y E 
Sbjct: 235 LVFVSDRHQTICKAIDKVFSIAFHCFCTQHIKVNLIAKFKDDAKAVEELFLKAAKAYRES 294

Query: 181 MLDR----------------EHT--VSGLLIIMYMKSQTTTW------------------ 219
             +                  HT  +    ++ +++ +  TW                  
Sbjct: 295 YFNSIWAQLRAYPSSINALFRHTRKLPVTALLDHIRGKLQTWFYDRRTLAASRSTTLSDY 354

[Close]

BLAST of Clc11G10490 vs. NCBI nr
Match: XP_038904344.1 (uncharacterized protein LOC120090698 [Benincasa hispida])

HSP 1 Score: 102.8 bits (255), Expect = 3.8e-18
Identity = 47/83 (56.63%), Postives = 59/83 (71.08%), Query Frame = 0


Query: 128 LHAKTCTCKEFDYYEIPCSHAIAVTHYRIIDPYTFYSLAYHIQTIYGGYAEPIFPVRPLL 187
           L+A+ C+CK+FDYY++PCSHAIA   YR IDP T  S  Y+IQ IYG Y EPIFP+  + 
Sbjct: 220 LNARMCSCKDFDYYDMPCSHAIAAVRYRNIDPCTLCSPYYNIQAIYGSYGEPIFPLGSIS 279

Query: 188 EWKRSDAFVDIEILPPTRVPQVG 211
           E  + D + DI+IL P RV QVG
Sbjct: 280 EGPQGDDYEDIQILSPIRVAQVG 302

[Close]

BLAST of Clc11G10490 vs. ExPASy TrEMBL
Match: A0A6J1DZQ9 (uncharacterized protein LOC111024593 OS=Momordica charantia OX=3673 GN=LOC111024593 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 5.7e-20
Identity = 87/299 (29.10%), Postives = 119/299 (39.80%), Query Frame = 0


Query: 1   MVRGRLEESYSHLHAYSEAQQIVNPGIVFDLKLDDGKYFSYVFMALGQY----------- 60
           +VRGR E+SY HLHAY+EA +I NP  +F ++ +    F Y+FMALG             
Sbjct: 64  IVRGRPEDSYMHLHAYNEAIKIENPCAIFHIETEGSLNFKYLFMALGASIRGFQPITRRV 123

Query: 61  -------------------------------------DETDDAWTWFFAMVKLVISAVSE 120
                                                +E+D +W WF   +K +I    E
Sbjct: 124 IMVDGTHLKGKFRGVILIGVAMDGNNQIYPLAFGIVDNESDASWKWFMKNLKDMIGHPPE 183

Query: 121 FVIVW-QFSSNYAFELCGKNY--------------------GEEMLDREHTVSGLLIIM- 180
            V +  +  + Y +      Y                    G E   R + V      M 
Sbjct: 184 LVFISDRHDATYVYRKSQFTYYWNQILSVGSGSLAKYLQEIGVERWARCYQVGRRYENMT 243

Query: 181 ------YMKSQTTTWRRGRGC-------GL-----LHAKTCTCKEFDYYEIPCSHAIAVT 212
                 + KS   T +    C       GL     L+A+TCTC EF Y  IPCSHAIAV 
Sbjct: 244 TNSAESFEKSHRYTVKSVDWCMFHVEDGGLDGKADLNARTCTCMEFQYMGIPCSHAIAVA 303

[Close]

BLAST of Clc11G10490 vs. ExPASy TrEMBL
Match: A0A6J1DYC4 (uncharacterized protein LOC111025678 OS=Momordica charantia OX=3673 GN=LOC111025678 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 4.8e-19
Identity = 93/368 (25.27%), Postives = 129/368 (35.05%), Query Frame = 0


Query: 1   MVRGRLEESYSHLHAYSEAQQIVNPGIVFDLKLDDGKYFSYVFMALGQY----------- 60
           ++RG    SY  L AY EA +I+NPG +F+LKL+ GKYF YVFM LGQ            
Sbjct: 115 LIRGDPASSYGLLPAYGEALKIMNPGTIFELKLEGGKYFKYVFMTLGQSIRGFLGCTRPV 174

Query: 61  -------------------------------------DETDDAWTWFFAMVKLVISAVSE 120
                                                 ET  +W WF   +K  ++ V  
Sbjct: 175 LVVDGAHLKGKFRGVLLSASGVDANNQIYSVAFAIIDGETVASWVWFMIQIKRALAGVDN 234

Query: 121 FVIVWQ------------FSSNY-------------------------AFELCGKNYGEE 180
            V V              FS  +                          F    K Y E 
Sbjct: 235 LVFVSDRHQTICKAIDKVFSIAFHCFCTQHIKVNLIAKFKDDAKAVEELFLKAAKAYRES 294

Query: 181 MLDR----------------EHT--VSGLLIIMYMKSQTTTW------------------ 219
             +                  HT  +    ++ +++ +  TW                  
Sbjct: 295 YFNSIWAQLRAYPSSINALFRHTRKLPVTALLDHIRGKLQTWFYDRRTLAASRSTTLSDY 354

[Close]

BLAST of Clc11G10490 vs. ExPASy TrEMBL
Match: A0A6J1DLQ2 (uncharacterized protein LOC111022107 OS=Momordica charantia OX=3673 GN=LOC111022107 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 4.8e-19
Identity = 54/131 (41.22%), Postives = 77/131 (58.78%), Query Frame = 0


Query: 91  NYGEEMLDREHTVSGLLIIMYMKSQTTTWRRG--RGCGLLHAKTCTCKEFDYYEIPCSHA 150
           +Y EEM+      +   I+M +       R G   G   L ++TCTC+EFDY+++PCSHA
Sbjct: 52  DYAEEMIXEASDNARXHIVMNIDXFNFEVRDGNLNGDVDLQSQTCTCREFDYFKVPCSHA 111

Query: 151 IAVTHYRIIDPYTFYSLAYHIQTIYGGYAEPIFPVRPLLEWKRSDAFVDIEILPPTRVPQ 210
           IA  + R I+PYT    AY + +   G AEPIFPV     WK S  FV+I++ PP +V +
Sbjct: 112 IAAANSRSINPYTLCDEAYTVNSWMLGCAEPIFPVGSSSTWKSSPGFVNIDVQPPKKVVR 171

Query: 211 VGRWQEIKTPF 220
           VGR Q ++ P+
Sbjct: 172 VGRRQTVRIPY 182

[Close]

BLAST of Clc11G10490 vs. ExPASy TrEMBL
Match: A0A6J1DP73 (uncharacterized protein LOC111022536 OS=Momordica charantia OX=3673 GN=LOC111022536 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.5e-17
Identity = 44/91 (48.35%), Postives = 59/91 (64.84%), Query Frame = 0


Query: 128 LHAKTCTCKEFDYYEIPCSHAIAVTHYRIIDPYTFYSLAYHIQTIYGGYAEPIFPVRPLL 187
           L+A+TC CKEFDY+++PCSHAIA   YR ++ YT  S AY +QT+   Y EP +P     
Sbjct: 276 LNARTCGCKEFDYFQLPCSHAIAAATYRNVNRYTLCSPAYTLQTLINAYXEPXYPXGDEE 335

Query: 188 EWKRSDAFVDIEILPPTRVPQVGRWQEIKTP 219
           +W   D FVD  + PP  VP+VGR Q ++ P
Sbjct: 336 DWILPDDFVDRXVEPPRXVPRVGRXQTVRIP 366

[Close]

BLAST of Clc11G10490 vs. ExPASy TrEMBL
Match: A0A6J1DNT3 (protein FAR1-RELATED SEQUENCE 4-like OS=Momordica charantia OX=3673 GN=LOC111022108 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 7.7e-17
Identity = 61/165 (36.97%), Postives = 84/165 (50.91%), Query Frame = 0


Query: 58  WFFAMVKLVISAVSEFVIVWQFSSNYAFELCGK---------NYGEEMLDREHTVSGLLI 117
           WF+    L  S  S         S+YA E+  +         +Y EEM+      +   I
Sbjct: 230 WFYERRTLASSRQSTL-------SDYAEEMIAEASDNARRXSDYAEEMIAEASDNARRHI 289

Query: 118 IMYMKSQTTTWRRG--RGCGLLHAKTCTCKEFDYYEIPCSHAIAVTHYRIIDPYTFYSLA 177
           +M +       R G   G   L ++TCTC+EFDY+++PCSHAIA    R I+PYT    A
Sbjct: 290 VMNIDQFNFEVRDGNLNGDVDLQSQTCTCREFDYFKVPCSHAIAAACSRSINPYTLCDEA 349

Query: 178 YHIQTIYGGYAEPIFPVRPLLEWKRSDAFVDIEILPPTRVPQVGR 212
           Y + +    YAEPIFPV     WK S  FV+I++ PP +V +VGR
Sbjct: 350 YTVNSWMLAYAEPIFPVGSSSTWKSSPGFVNIDVQPPKKVVRVGR 387

[Close]

BLAST of Clc11G10490 vs. TAIR 10
Match: AT1G64260.1 (MuDR family transposase )

HSP 1 Score: 46.6 bits (109), Expect = 3.0e-05
Identity = 21/62 (33.87%), Postives = 31/62 (50.00%), Query Frame = 0


Query: 128 LHAKTCTCKEFDYYEIPCSHAIAVTHYRIIDPYTFYSLAYHIQTIYGGYAEPIFPVRPLL 187
           L+  TCTC++F  Y+ PC HA+AV     I+P  +    Y ++     YA    PV  + 
Sbjct: 638 LNVSTCTCRKFQSYKFPCLHALAVFEKLKINPLQYVDECYTVEQYCKTYAATFSPVPDVA 697

Query: 188 EW 190
            W
Sbjct: 698 AW 699

[Close]

BLAST of Clc11G10490 vs. TAIR 10
Match: AT1G64255.1 (MuDR family transposase )

HSP 1 Score: 41.6 bits (96), Expect = 9.7e-04
Identity = 33/138 (23.91%), Postives = 55/138 (39.86%), Query Frame = 0


Query: 79  FSSNYAFELCGKNYGEEMLDR-EHTVSGLLIIMYMKSQ--------TTTWRRGRGCGLLH 138
           FS + +   CG  Y E ++D+ E   +  +   Y+ +          T   +G     L 
Sbjct: 589 FSCSRSSLNCGDVYTEPVMDKLEEFRTTFVTYSYIVTPLDNNAFQVATALDKGECIVQLS 648

Query: 139 AKTCTCKEFDYYEIPCSHAIAVTHYRIIDPYTFYSLAYHIQTIYGGYAEPIFPVRPLLEW 198
             +CTC +F  Y+ PC HA+AV      +P  +    Y ++ +   YA     V  +  W
Sbjct: 649 DCSCTCGDFQRYKFPCLHALAVCKKLKFNPLQYVDDCYTLERLKRTYATIFSHVPEMSAW 708

Query: 199 KRSDAFVDIEILPPTRVP 208
             +       +LPP   P
Sbjct: 709 PEASGVP--RLLPPVIPP 724

The following BLAST results are available for this feature:

BLAST of Clc11G10490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889288.1	6.1e-24	57.73	uncharacterized protein LOC120079194 [Benincasa hispida]	[more]
XP_022157996.1	1.2e-19	29.10	uncharacterized protein LOC111024593 [Momordica charantia]	[more]
XP_022154963.1	1.0e-18	41.22	uncharacterized protein LOC111022107 [Momordica charantia]	[more]
XP_022159268.1	1.0e-18	25.27	uncharacterized protein LOC111025678 [Momordica charantia]	[more]
XP_038904344.1	3.8e-18	56.63	uncharacterized protein LOC120090698 [Benincasa hispida]	[more]

BLAST of Clc11G10490 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc11G10490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DZQ9	5.7e-20	29.10	uncharacterized protein LOC111024593 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DYC4	4.8e-19	25.27	uncharacterized protein LOC111025678 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DLQ2	4.8e-19	41.22	uncharacterized protein LOC111022107 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DP73	3.5e-17	48.35	uncharacterized protein LOC111022536 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DNT3	7.7e-17	36.97	protein FAR1-RELATED SEQUENCE 4-like OS=Momordica charantia OX=3673 GN=LOC111022...	[more]

BLAST of Clc11G10490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G64260.1	3.0e-05	33.87	MuDR family transposase	[more]
AT1G64255.1	9.7e-04	23.91	MuDR family transposase	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006564	Zinc finger, PMZ-type	SMART	SM00575	26again6	coord: 131..158 e-value: 5.5E-8 score: 42.5
IPR007527	Zinc finger, SWIM-type	PFAM	PF04434	SWIM	coord: 131..154 e-value: 5.3E-8 score: 32.4
IPR007527	Zinc finger, SWIM-type	PROSITE	PS50966	ZF_SWIM	coord: 106..156 score: 9.198349

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G10490.1	Clc11G10490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding